Wall clock time and date at job start Tue Mar 31 2020 19:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09008 * 109.46963 * 2 1 4 4 C 1.52999 * 109.47248 * 119.99675 * 2 1 3 5 5 C 1.50695 * 109.47443 * 294.99969 * 4 2 1 6 6 O 1.21285 * 119.99901 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00347 * 179.97438 * 5 4 2 8 8 C 1.46950 * 120.44220 * 359.72953 * 7 5 4 9 9 C 1.54061 * 108.29289 * 125.71318 * 8 7 5 10 10 H 1.09003 * 110.52407 * 172.28382 * 9 8 7 11 11 C 1.53376 * 109.34037 * 294.24982 * 9 8 7 12 12 C 1.53008 * 109.25647 * 60.54321 * 11 9 8 13 13 C 1.54193 * 110.61527 * 59.71471 * 12 11 9 14 14 C 1.53364 * 109.08196 * 301.01562 * 13 12 11 15 15 H 1.09003 * 110.59191 * 176.63074 * 14 13 12 16 16 C 1.46943 * 120.44468 * 180.02562 * 7 5 4 17 17 N 1.47565 * 107.70451 * 51.34799 * 9 8 7 18 18 C 1.36929 * 121.61335 * 120.34044 * 17 9 8 19 19 H 1.07999 * 119.99807 * 332.08128 * 18 17 9 20 20 C 1.38816 * 120.00064 * 152.07595 * 18 17 9 21 21 N 1.31612 * 119.99901 * 341.79228 * 20 18 17 22 22 Si 1.86802 * 119.99870 * 161.79026 * 20 18 17 23 23 H 1.48504 * 109.47026 * 90.00044 * 22 20 18 24 24 H 1.48502 * 109.46980 * 209.99849 * 22 20 18 25 25 H 1.48501 * 109.47200 * 330.00040 * 22 20 18 26 26 C 1.52996 * 109.47459 * 240.00084 * 2 1 3 27 27 H 1.09005 * 110.54704 * 301.42433 * 26 2 1 28 28 C 1.55229 * 110.78026 * 64.28655 * 26 2 1 29 29 C 1.54814 * 101.98745 * 155.50538 * 28 26 2 30 30 C 1.54096 * 104.30454 * 339.26090 * 29 28 26 31 31 O 1.43747 * 107.29413 * 357.90699 * 30 29 28 32 32 H 1.08999 * 109.47397 * 299.99919 * 1 2 3 33 33 H 1.08998 * 109.47414 * 60.00232 * 1 2 3 34 34 H 1.09000 * 109.47483 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.46983 * 55.00370 * 4 2 1 36 36 H 1.09007 * 109.46916 * 175.00092 * 4 2 1 37 37 H 1.09002 * 109.62210 * 245.48015 * 8 7 5 38 38 H 1.09002 * 109.62284 * 6.03719 * 8 7 5 39 39 H 1.09003 * 109.50631 * 180.47882 * 11 9 8 40 40 H 1.09001 * 109.50749 * 300.56275 * 11 9 8 41 41 H 1.08998 * 109.41725 * 180.68100 * 12 11 9 42 42 H 1.09005 * 109.41766 * 300.54471 * 12 11 9 43 43 H 1.09002 * 110.80589 * 180.39226 * 13 12 11 44 44 H 1.09002 * 108.37387 * 60.17582 * 13 12 11 45 45 H 1.08996 * 109.62657 * 353.96064 * 16 7 5 46 46 H 1.08996 * 109.62895 * 114.54260 * 16 7 5 47 47 H 0.96999 * 119.99676 * 180.02562 * 21 20 18 48 48 H 1.08994 * 110.88890 * 37.37211 * 28 26 2 49 49 H 1.09005 * 111.01993 * 273.69803 * 28 26 2 50 50 H 1.08998 * 110.48183 * 220.51985 * 29 28 26 51 51 H 1.08992 * 110.48774 * 98.00611 * 29 28 26 52 52 H 1.09000 * 109.87661 * 117.32963 * 30 29 28 53 53 H 1.08998 * 109.88287 * 238.48048 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0870 2.3633 7 7 1.9845 -0.3918 3.7002 8 6 2.7421 -1.6420 3.8491 9 6 4.0025 -1.3471 4.6846 10 1 4.5215 -2.2728 4.9332 11 6 4.9242 -0.4062 3.8986 12 6 4.1872 0.9053 3.6196 13 6 3.7721 1.5862 4.9393 14 6 2.8653 0.6354 5.7304 15 1 2.6049 1.0689 6.6961 16 6 1.6004 0.3591 4.9035 17 7 3.5743 -0.6462 5.9106 18 6 3.8224 -1.1605 7.1551 19 1 3.9115 -2.2283 7.2902 20 6 3.9595 -0.3093 8.2431 21 7 4.2099 0.9685 8.0516 22 14 3.7884 -0.9776 9.9791 23 1 5.1176 -1.4191 10.4728 24 1 3.2582 0.0864 10.8691 25 1 2.8535 -2.1314 9.9755 26 6 2.0400 -0.7212 -1.2492 27 1 1.6658 -1.7446 -1.2797 28 6 1.6299 0.0467 -2.5344 29 6 2.7079 -0.4176 -3.5440 30 6 3.8651 -0.9220 -2.6604 31 8 3.4830 -0.7060 -1.2915 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.6053 -1.7198 1.2952 36 1 3.1263 -0.7993 1.2056 37 1 2.1272 -2.3843 4.3582 38 1 3.0312 -2.0142 2.8662 39 1 5.8209 -0.2025 4.4839 40 1 5.2040 -0.8751 2.9552 41 1 4.8357 1.5714 3.0506 42 1 3.2851 0.6986 3.0436 43 1 3.2406 2.5176 4.7440 44 1 4.6729 1.7946 5.5166 45 1 1.1386 1.3031 4.6141 46 1 0.8981 -0.2295 5.4937 47 1 4.3060 1.5631 8.8119 48 1 1.6826 1.1239 -2.3771 49 1 0.6341 -0.2486 -2.8654 50 1 3.0362 0.4178 -4.1624 51 1 2.3240 -1.2249 -4.1676 52 1 4.0292 -1.9852 -2.8360 53 1 4.7735 -0.3628 -2.8843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039984158.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:19 Heat of formation + Delta-G solvation = -60.498781 kcal Electronic energy + Delta-G solvation = -32047.219341 eV Core-core repulsion = 28112.089710 eV Total energy + Delta-G solvation = -3935.129631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.06327 -40.45702 -39.24712 -35.79619 -35.59281 -34.36090 -33.45862 -32.91678 -32.25452 -29.86460 -28.69781 -27.92127 -26.97410 -25.41606 -24.30355 -23.14787 -22.84364 -22.24221 -21.27487 -20.54533 -19.84223 -18.56042 -17.88862 -17.41776 -16.74158 -16.67070 -16.54555 -16.32512 -16.10442 -15.73763 -15.22420 -15.18183 -14.74356 -14.58245 -14.48386 -14.15285 -14.14343 -13.91248 -13.63708 -13.39631 -13.21097 -13.09978 -13.05560 -12.85507 -12.61503 -12.55593 -12.40014 -12.26253 -12.17403 -12.05938 -11.89659 -11.76013 -11.70062 -11.63041 -11.49002 -11.43543 -11.15836 -11.11090 -10.57304 -10.48731 -10.40687 -9.40905 -8.44855 -7.80489 -5.26038 1.47597 1.50752 1.58704 1.72041 2.13288 2.53958 2.96806 3.32112 3.50502 3.54998 3.74416 3.80556 4.07713 4.09806 4.13026 4.15994 4.21239 4.26197 4.28050 4.34010 4.41117 4.44481 4.49848 4.54182 4.64982 4.70372 4.75187 4.79514 4.84868 4.85254 4.88122 4.89354 4.94917 4.99684 5.01843 5.06130 5.08164 5.14647 5.21448 5.26811 5.28940 5.35901 5.40868 5.42350 5.48513 5.56881 5.68873 5.74545 5.86655 6.09830 6.42177 6.61109 7.16614 7.28959 7.86129 8.45170 9.22795 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024613 B = 0.003041 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.344417 B = 9204.481330 C = 9545.541845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 H 0.057 0.943 4 C -0.128 4.128 5 C 0.512 3.488 6 O -0.582 6.582 7 N -0.594 5.594 8 C 0.103 3.897 9 C 0.142 3.858 10 H 0.084 0.916 11 C -0.114 4.114 12 C -0.132 4.132 13 C -0.106 4.106 14 C 0.181 3.819 15 H 0.074 0.926 16 C 0.106 3.894 17 N -0.594 5.594 18 C -0.254 4.254 19 H 0.071 0.929 20 C -0.048 4.048 21 N -0.924 5.924 22 Si 0.961 3.039 23 H -0.289 1.289 24 H -0.299 1.299 25 H -0.271 1.271 26 C 0.082 3.918 27 H 0.086 0.914 28 C -0.149 4.149 29 C -0.152 4.152 30 C 0.038 3.962 31 O -0.399 6.399 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.030 0.970 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.088 0.912 43 H 0.034 0.966 44 H 0.031 0.969 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.246 0.754 48 H 0.066 0.934 49 H 0.097 0.903 50 H 0.081 0.919 51 H 0.091 0.909 52 H 0.068 0.932 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.007 -7.212 -22.968 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 H 0.075 0.925 4 C -0.168 4.168 5 C 0.304 3.696 6 O -0.463 6.463 7 N -0.326 5.326 8 C -0.021 4.021 9 C 0.036 3.964 10 H 0.102 0.898 11 C -0.153 4.153 12 C -0.170 4.170 13 C -0.145 4.145 14 C 0.073 3.927 15 H 0.092 0.908 16 C -0.019 4.019 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.089 0.911 20 C -0.244 4.244 21 N -0.570 5.570 22 Si 0.790 3.210 23 H -0.216 1.216 24 H -0.226 1.226 25 H -0.196 1.196 26 C 0.025 3.975 27 H 0.104 0.896 28 C -0.186 4.186 29 C -0.190 4.190 30 C -0.038 4.038 31 O -0.319 6.319 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.049 0.951 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.106 0.894 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.055 0.945 48 H 0.085 0.915 49 H 0.116 0.884 50 H 0.100 0.900 51 H 0.109 0.891 52 H 0.087 0.913 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.166 -6.574 -22.695 24.186 hybrid contribution 0.335 0.470 1.581 1.683 sum -4.831 -6.105 -21.113 22.503 Atomic orbital electron populations 1.21845 0.93264 1.02489 1.02646 1.20827 0.96702 0.98802 0.91795 0.92480 1.21792 1.03814 1.00486 0.90692 1.21033 0.78056 0.85470 0.85071 1.90621 1.42544 1.26469 1.86655 1.48212 1.54116 1.24828 1.05455 1.22495 0.93074 0.84686 1.01861 1.21562 0.92948 0.95233 0.86705 0.89778 1.21847 0.97722 0.96294 0.99442 1.22198 1.01045 0.96569 0.97147 1.21843 0.99247 0.96987 0.96402 1.20870 0.89078 0.86487 0.96245 0.90788 1.22078 0.97741 0.96029 0.86033 1.44576 1.63987 1.21993 1.00975 1.19429 1.42500 0.91472 0.84973 0.91113 1.25696 1.00833 0.96335 1.01502 1.70160 1.52341 1.04681 1.29793 0.85383 0.77565 0.77216 0.80838 1.21599 1.22563 1.19583 1.23298 0.80653 0.99171 0.94398 0.89580 1.23206 1.00396 1.00708 0.94317 1.22940 0.95234 1.02426 0.98379 1.23301 0.98501 1.01007 0.81004 1.88881 1.21683 1.93960 1.27375 0.92890 0.91474 0.91390 0.86599 0.87962 0.90938 0.86827 0.95149 0.90250 0.94801 0.89394 0.94739 0.94985 0.91097 0.92610 0.94475 0.91493 0.88450 0.90043 0.89058 0.91335 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.76 71.98 0.63 -2.32 16 2 C -0.06 -1.37 1.82 -10.80 -0.02 -1.39 16 3 H 0.06 1.58 7.96 -2.38 -0.02 1.56 16 4 C -0.13 -2.99 3.43 29.85 0.10 -2.89 16 5 C 0.51 16.40 4.77 87.66 0.42 16.82 16 6 O -0.58 -22.37 13.36 -3.04 -0.04 -22.41 16 7 N -0.59 -20.14 1.63 -816.25 -1.33 -21.48 16 8 C 0.10 3.04 5.86 86.65 0.51 3.55 16 9 C 0.14 5.30 3.58 45.27 0.16 5.47 16 10 H 0.08 3.00 8.01 -2.39 -0.02 2.98 16 11 C -0.11 -4.18 5.64 30.72 0.17 -4.01 16 12 C -0.13 -5.19 5.58 31.00 0.17 -5.02 16 13 C -0.11 -4.91 5.65 31.12 0.18 -4.73 16 14 C 0.18 8.54 2.62 45.12 0.12 8.65 16 15 H 0.07 4.09 5.89 -2.39 -0.01 4.07 16 16 C 0.11 4.30 5.89 86.51 0.51 4.81 16 17 N -0.59 -27.99 2.53 -644.72 -1.63 -29.63 16 18 C -0.25 -13.26 9.71 84.04 0.82 -12.45 16 19 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 20 C -0.05 -2.60 4.98 84.86 0.42 -2.17 16 21 N -0.92 -53.50 10.97 21.65 0.24 -53.26 16 22 Si 0.96 44.25 29.59 68.60 2.03 46.28 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C 0.08 1.41 2.83 31.36 0.09 1.50 16 27 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 28 C -0.15 -2.04 5.69 31.98 0.18 -1.86 16 29 C -0.15 -1.69 7.00 31.58 0.22 -1.47 16 30 C 0.04 0.56 7.70 72.35 0.56 1.12 16 31 O -0.40 -8.42 10.60 -148.98 -1.58 -10.00 16 32 H 0.05 1.43 5.95 -2.39 -0.01 1.42 16 33 H 0.07 1.15 7.37 -2.39 -0.02 1.13 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.12 2.07 7.91 -2.39 -0.02 2.05 16 36 H 0.10 2.41 7.20 -2.38 -0.02 2.40 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.11 2.49 5.90 -2.39 -0.01 2.48 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.09 3.28 2.63 -2.40 -0.01 3.28 16 43 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.03 1.69 7.96 -2.39 -0.02 1.67 16 45 H 0.07 2.98 6.98 -2.39 -0.02 2.96 16 46 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 48 H 0.07 1.08 8.06 -2.39 -0.02 1.06 16 49 H 0.10 0.99 8.07 -2.38 -0.02 0.97 16 50 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -66.57 385.31 3.80 -62.77 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.88 Total: 24.12 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 5.24 Total: 3.60 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -2.73 Total: -104.37 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.62 Total: -32.41 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -66.57 3.80 -62.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039984158.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.273 kcal (2) G-P(sol) polarization free energy of solvation -66.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds