Wall clock time and date at job start Tue Mar 31 2020 19:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46887 * 2 1 4 4 C 1.53003 * 109.46953 * 240.00604 * 2 1 3 5 5 C 1.50695 * 109.47511 * 64.99600 * 4 2 1 6 6 O 1.21281 * 119.99792 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00294 * 179.97438 * 5 4 2 8 8 C 1.46388 * 120.54643 * 359.69805 * 7 5 4 9 9 C 1.53595 * 108.62209 * 125.74391 * 8 7 5 10 10 H 1.09001 * 111.08445 * 172.52889 * 9 8 7 11 11 C 1.53365 * 108.69313 * 294.43253 * 9 8 7 12 12 C 1.53013 * 109.24547 * 60.25140 * 11 9 8 13 13 C 1.53010 * 109.79625 * 60.58995 * 12 11 9 14 14 C 1.53872 * 109.20201 * 299.30738 * 13 12 11 15 15 H 1.09006 * 110.71112 * 177.61439 * 14 13 12 16 16 C 1.46942 * 120.44681 * 180.02562 * 7 5 4 17 17 N 1.47563 * 107.72132 * 56.55622 * 14 13 12 18 18 C 1.36937 * 121.61299 * 122.25887 * 17 14 13 19 19 H 1.08007 * 120.00442 * 155.73700 * 18 17 14 20 20 C 1.38811 * 120.00088 * 335.73430 * 18 17 14 21 21 N 1.31622 * 120.00100 * 331.03550 * 20 18 17 22 22 Si 1.86802 * 120.00284 * 151.02695 * 20 18 17 23 23 H 1.48504 * 109.46830 * 60.00387 * 22 20 18 24 24 H 1.48494 * 109.47476 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47195 * 300.00717 * 22 20 18 26 26 C 1.52997 * 109.47397 * 120.00273 * 2 1 3 27 27 H 1.09004 * 110.33202 * 60.70120 * 26 2 1 28 28 C 1.54480 * 110.37000 * 298.45622 * 26 2 1 29 29 C 1.54513 * 104.05989 * 217.19018 * 28 26 2 30 30 C 1.54480 * 104.06277 * 359.97438 * 29 28 26 31 31 O 1.44425 * 110.37496 * 182.95325 * 26 2 1 32 32 H 1.09008 * 109.46837 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47314 * 299.99356 * 1 2 3 34 34 H 1.09000 * 109.47275 * 60.00424 * 1 2 3 35 35 H 1.09000 * 109.46748 * 304.99342 * 4 2 1 36 36 H 1.09003 * 109.46511 * 185.00192 * 4 2 1 37 37 H 1.08995 * 109.49327 * 6.06299 * 8 7 5 38 38 H 1.08997 * 109.67504 * 245.54028 * 8 7 5 39 39 H 1.08989 * 109.51203 * 180.18323 * 11 9 8 40 40 H 1.09003 * 109.51045 * 300.27986 * 11 9 8 41 41 H 1.09002 * 109.41812 * 180.68862 * 12 11 9 42 42 H 1.08999 * 109.41940 * 300.49047 * 12 11 9 43 43 H 1.08998 * 109.50253 * 59.36898 * 13 12 11 44 44 H 1.08995 * 109.50718 * 179.45545 * 13 12 11 45 45 H 1.08998 * 109.62781 * 114.52825 * 16 7 5 46 46 H 1.09002 * 109.62510 * 353.94981 * 16 7 5 47 47 H 0.97002 * 119.99744 * 354.12882 * 21 20 18 48 48 H 1.09003 * 110.51102 * 335.83010 * 28 26 2 49 49 H 1.08995 * 110.51460 * 98.54391 * 28 26 2 50 50 H 1.08994 * 110.51270 * 118.64208 * 29 28 26 51 51 H 1.09005 * 110.51132 * 241.21746 * 29 28 26 52 52 H 1.08999 * 110.36948 * 142.81374 * 30 29 28 53 53 H 1.08999 * 110.36938 * 265.14788 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6413 0.0571 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9853 -0.3912 -3.7002 8 6 2.7518 -1.6292 -3.8506 9 6 1.9915 -2.5642 -4.8029 10 1 2.5872 -3.4436 -5.0476 11 6 0.6713 -2.9745 -4.1389 12 6 -0.1656 -1.7232 -3.8648 13 6 -0.4735 -1.0070 -5.1814 14 6 0.8472 -0.5861 -5.8494 15 1 0.6579 -0.1099 -6.8115 16 6 1.6021 0.3602 -4.9034 17 7 1.6693 -1.7992 -6.0230 18 6 2.1164 -2.1929 -7.2560 19 1 2.9980 -2.8113 -7.3387 20 6 1.4366 -1.7972 -8.3997 21 7 0.1417 -1.5669 -8.3491 22 14 2.3595 -1.5912 -10.0107 23 1 2.9826 -2.8838 -10.3930 24 1 1.4131 -1.1643 -11.0724 25 1 3.4167 -0.5613 -9.8473 26 6 2.0401 -0.7213 1.2492 27 1 1.6948 -1.7551 1.2571 28 6 1.5688 0.0128 2.5241 29 6 2.7651 -0.1133 3.4938 30 6 3.8174 -0.9092 2.6902 31 8 3.4825 -0.6725 1.3042 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.6054 -1.7197 -1.2952 36 1 3.1264 -0.7994 -1.2056 37 1 2.8627 -2.1087 -2.8781 38 1 3.7344 -1.4044 -4.2653 39 1 0.1218 -3.6417 -4.8028 40 1 0.8800 -3.4865 -3.1995 41 1 -1.0995 -2.0106 -3.3816 42 1 0.3893 -1.0526 -3.2087 43 1 -1.0203 -1.6796 -5.8422 44 1 -1.0777 -0.1221 -4.9817 45 1 2.4961 0.7378 -5.3995 46 1 0.9554 1.1923 -4.6249 47 1 -0.3530 -1.7550 -7.5361 48 1 1.3620 1.0608 2.3070 49 1 0.6866 -0.4732 2.9406 50 1 3.1497 0.8722 3.7561 51 1 2.4737 -0.6597 4.3909 52 1 4.8195 -0.5396 2.9070 53 1 3.7460 -1.9723 2.9204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039984161.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:34 Heat of formation + Delta-G solvation = -59.584497 kcal Electronic energy + Delta-G solvation = -32103.862998 eV Core-core repulsion = 28168.773013 eV Total energy + Delta-G solvation = -3935.089985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.30599 -40.52987 -39.41705 -35.98780 -35.78378 -34.49891 -33.63952 -32.93725 -32.23135 -29.85642 -28.61168 -27.99251 -27.09774 -25.36049 -24.34639 -23.19114 -23.02781 -22.37802 -21.27473 -20.67498 -20.19983 -18.80335 -18.05858 -17.41049 -16.78723 -16.68856 -16.52677 -16.37766 -16.08404 -15.81839 -15.56382 -15.22564 -14.81480 -14.65570 -14.55162 -14.28404 -14.17093 -14.03828 -13.97585 -13.64379 -13.40203 -13.21096 -12.86474 -12.65330 -12.56744 -12.49855 -12.35854 -12.20631 -12.16567 -11.99090 -11.91601 -11.87538 -11.77180 -11.67373 -11.58648 -11.40057 -11.29765 -11.07549 -10.67298 -10.58081 -10.41520 -9.55784 -8.68095 -8.19709 -5.28615 1.59019 1.61699 1.66503 1.84322 2.01851 2.67246 2.97736 3.20129 3.39725 3.47061 3.70412 3.79555 3.98120 4.04984 4.06862 4.07652 4.09337 4.10932 4.12069 4.25483 4.28750 4.40533 4.44271 4.49098 4.52380 4.63362 4.66526 4.68091 4.71238 4.74238 4.79406 4.82499 4.86326 4.92405 4.95384 4.97145 5.01489 5.05009 5.10870 5.18238 5.19640 5.22920 5.29061 5.32070 5.36656 5.43723 5.52242 5.61641 5.87832 5.99911 6.45413 6.51089 7.07727 7.18555 7.79863 8.29933 9.06938 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025567 B = 0.002983 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.912347 B = 9382.891185 C = 9672.326456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 H 0.061 0.939 4 C -0.128 4.128 5 C 0.514 3.486 6 O -0.577 6.577 7 N -0.593 5.593 8 C 0.103 3.897 9 C 0.144 3.856 10 H 0.081 0.919 11 C -0.119 4.119 12 C -0.133 4.133 13 C -0.116 4.116 14 C 0.159 3.841 15 H 0.064 0.936 16 C 0.111 3.889 17 N -0.603 5.603 18 C -0.349 4.349 19 H 0.057 0.943 20 C -0.074 4.074 21 N -0.945 5.945 22 Si 1.106 2.894 23 H -0.277 1.277 24 H -0.298 1.298 25 H -0.284 1.284 26 C 0.080 3.920 27 H 0.083 0.917 28 C -0.150 4.150 29 C -0.153 4.153 30 C 0.037 3.963 31 O -0.396 6.396 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.030 0.970 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.097 0.903 43 H 0.031 0.969 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.263 0.737 48 H 0.068 0.932 49 H 0.092 0.908 50 H 0.073 0.927 51 H 0.093 0.907 52 H 0.096 0.904 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 -1.076 24.542 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 H 0.080 0.920 4 C -0.168 4.168 5 C 0.306 3.694 6 O -0.458 6.458 7 N -0.326 5.326 8 C -0.021 4.021 9 C 0.037 3.963 10 H 0.099 0.901 11 C -0.158 4.158 12 C -0.171 4.171 13 C -0.156 4.156 14 C 0.051 3.949 15 H 0.082 0.918 16 C -0.014 4.014 17 N -0.326 5.326 18 C -0.478 4.478 19 H 0.074 0.926 20 C -0.271 4.271 21 N -0.588 5.588 22 Si 0.932 3.068 23 H -0.203 1.203 24 H -0.224 1.224 25 H -0.210 1.210 26 C 0.023 3.977 27 H 0.101 0.899 28 C -0.188 4.188 29 C -0.191 4.191 30 C -0.039 4.039 31 O -0.316 6.316 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.114 0.886 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.111 0.889 50 H 0.092 0.908 51 H 0.112 0.888 52 H 0.114 0.886 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.849 -0.065 22.807 23.317 hybrid contribution -0.329 -0.435 0.816 0.981 sum 4.520 -0.500 23.623 24.057 Atomic orbital electron populations 1.21875 0.93594 1.02397 1.02657 1.20847 0.96451 0.98956 0.91742 0.92044 1.21811 1.04071 1.00281 0.90620 1.21043 0.78209 0.85300 0.84890 1.90632 1.42118 1.26480 1.86586 1.48061 1.54175 1.24955 1.05386 1.22266 0.94093 0.84296 1.01467 1.21473 0.94760 0.93565 0.86466 0.90090 1.21930 0.97038 0.96716 1.00073 1.22092 0.99649 0.98211 0.97156 1.21919 0.97449 0.98784 0.97411 1.21181 0.89920 0.87771 0.96022 0.91814 1.21905 0.98997 0.94630 0.85837 1.44657 1.61216 1.23938 1.02749 1.20157 1.07889 1.34612 0.85141 0.92562 1.26874 0.95797 1.00480 1.03986 1.70879 1.06840 1.50704 1.30381 0.82962 0.74044 0.77042 0.72750 1.20281 1.22416 1.21047 1.23099 0.80865 0.99275 0.94463 0.89889 1.22999 0.99409 1.01619 0.94730 1.22950 0.95264 1.01663 0.99197 1.23591 0.99789 0.99993 0.80542 1.89143 1.21600 1.93354 1.27500 0.91708 0.91358 0.92968 0.86996 0.87467 0.86483 0.91719 0.95130 0.89414 0.93507 0.88558 0.95068 0.93685 0.92813 0.90503 0.92554 0.91294 0.88925 0.90828 0.88817 0.88607 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.72 71.98 0.63 -2.49 16 2 C -0.06 -1.30 1.71 -10.79 -0.02 -1.32 16 3 H 0.06 1.60 7.95 -2.39 -0.02 1.58 16 4 C -0.13 -2.90 3.43 29.85 0.10 -2.80 16 5 C 0.51 16.08 4.74 87.66 0.42 16.49 16 6 O -0.58 -21.67 13.36 -3.03 -0.04 -21.71 16 7 N -0.59 -19.94 1.63 -818.60 -1.33 -21.27 16 8 C 0.10 3.08 5.78 86.60 0.50 3.58 16 9 C 0.14 5.31 3.62 45.11 0.16 5.48 16 10 H 0.08 2.95 8.01 -2.39 -0.02 2.93 16 11 C -0.12 -4.02 5.59 30.72 0.17 -3.85 16 12 C -0.13 -4.74 5.55 30.60 0.17 -4.57 16 13 C -0.12 -5.05 5.36 30.89 0.17 -4.89 16 14 C 0.16 7.38 2.52 45.29 0.11 7.49 16 15 H 0.06 3.50 5.96 -2.38 -0.01 3.49 16 16 C 0.11 4.50 5.89 86.51 0.51 5.01 16 17 N -0.60 -28.53 2.42 -644.67 -1.56 -30.09 16 18 C -0.35 -18.78 9.60 84.03 0.81 -17.97 16 19 H 0.06 3.01 7.98 -2.91 -0.02 2.98 16 20 C -0.07 -4.16 4.72 84.86 0.40 -3.76 16 21 N -0.94 -57.06 12.23 21.65 0.26 -56.80 16 22 Si 1.11 50.84 30.01 68.60 2.06 52.89 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 C 0.08 1.34 2.80 31.10 0.09 1.43 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 C -0.15 -1.99 5.57 31.61 0.18 -1.81 16 29 C -0.15 -1.66 7.09 31.61 0.22 -1.44 16 30 C 0.04 0.48 7.63 72.49 0.55 1.04 16 31 O -0.40 -7.78 10.78 -148.98 -1.61 -9.39 16 32 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.07 1.21 7.21 -2.39 -0.02 1.19 16 34 H 0.05 1.46 5.95 -2.39 -0.01 1.44 16 35 H 0.11 2.10 7.69 -2.39 -0.02 2.08 16 36 H 0.11 2.29 7.44 -2.39 -0.02 2.27 16 37 H 0.12 2.54 5.89 -2.39 -0.01 2.53 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.10 3.23 2.49 -3.41 -0.01 3.22 16 43 H 0.03 1.52 6.49 -2.39 -0.02 1.51 16 44 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.08 3.17 6.99 -2.39 -0.02 3.15 16 47 H 0.26 15.96 5.24 -92.71 -0.49 15.48 16 48 H 0.07 1.05 7.73 -2.39 -0.02 1.03 16 49 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 52 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 53 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -68.88 380.92 4.13 -64.76 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 1.17 Total: 25.98 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 5.17 Total: -4.38 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -2.62 Total: -108.15 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -1.65 Total: -31.10 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.06 Total: 52.89 kcal Total: -68.88 4.13 -64.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039984161.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.174 kcal (2) G-P(sol) polarization free energy of solvation -68.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds