Wall clock time and date at job start Tue Mar 31 2020 19:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47616 * 2 1 4 4 C 1.50706 * 109.46966 * 240.00350 * 2 1 3 5 5 O 1.21279 * 119.99638 * 240.00259 * 4 2 1 6 6 N 1.34770 * 120.00167 * 59.99667 * 4 2 1 7 7 C 1.47485 * 125.66028 * 359.69694 * 6 4 2 8 8 C 1.55241 * 104.78873 * 155.92762 * 7 6 4 9 9 C 1.54513 * 101.44125 * 36.66520 * 8 7 6 10 10 C 1.47179 * 125.66336 * 180.02562 * 6 4 2 11 11 C 1.52273 * 110.20459 * 83.42437 * 9 8 7 12 12 C 1.53311 * 109.41640 * 182.19976 * 11 9 8 13 13 N 1.46928 * 108.70988 * 306.49112 * 12 11 9 14 14 C 1.36941 * 120.56156 * 234.21775 * 13 12 11 15 15 H 1.07994 * 120.00146 * 27.93405 * 14 13 12 16 16 C 1.38814 * 119.99640 * 207.94088 * 14 13 12 17 17 N 1.31617 * 120.00184 * 17.45691 * 16 14 13 18 18 Si 1.86795 * 119.99823 * 197.45322 * 16 14 13 19 19 H 1.48504 * 109.47331 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47286 * 120.00082 * 18 16 14 21 21 H 1.48504 * 109.47347 * 240.00042 * 18 16 14 22 22 C 1.46931 * 118.87453 * 54.23263 * 13 12 11 23 23 C 1.52281 * 110.20848 * 206.60847 * 9 8 7 24 24 C 1.52998 * 109.47301 * 120.00269 * 2 1 3 25 25 H 1.09007 * 109.82564 * 179.42821 * 24 2 1 26 26 C 1.54382 * 109.82939 * 300.41282 * 24 2 1 27 27 C 1.55305 * 102.25390 * 140.87238 * 26 24 2 28 28 C 1.54948 * 100.93932 * 325.86140 * 27 26 24 29 29 O 1.43236 * 109.83050 * 58.54464 * 24 2 1 30 30 H 1.08994 * 109.47616 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47042 * 300.00267 * 1 2 3 32 32 H 1.09005 * 109.47090 * 59.99615 * 1 2 3 33 33 H 1.09001 * 110.35101 * 274.87030 * 7 6 4 34 34 H 1.08996 * 110.35202 * 37.16069 * 7 6 4 35 35 H 1.09000 * 111.20410 * 278.56717 * 8 7 6 36 36 H 1.09004 * 110.94578 * 154.64760 * 8 7 6 37 37 H 1.09005 * 109.90436 * 300.84254 * 10 6 4 38 38 H 1.08997 * 109.90966 * 62.09907 * 10 6 4 39 39 H 1.08997 * 109.47780 * 302.18107 * 11 9 8 40 40 H 1.08996 * 109.47984 * 62.21683 * 11 9 8 41 41 H 1.09000 * 109.59838 * 186.72035 * 12 11 9 42 42 H 1.08996 * 109.60107 * 66.25669 * 12 11 9 43 43 H 0.96997 * 120.00409 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.59784 * 185.99067 * 22 13 12 45 45 H 1.09005 * 109.59791 * 65.52248 * 22 13 12 46 46 H 1.08995 * 109.48037 * 297.77659 * 23 9 8 47 47 H 1.09008 * 109.47406 * 57.79614 * 23 9 8 48 48 H 1.09002 * 110.84258 * 259.05792 * 26 24 2 49 49 H 1.08994 * 110.84981 * 22.47290 * 26 24 2 50 50 H 1.09000 * 111.12995 * 83.78433 * 27 26 24 51 51 H 1.09004 * 111.12040 * 207.90560 * 27 26 24 52 52 H 1.08991 * 110.31275 * 277.53299 * 28 27 26 53 53 H 1.09000 * 110.30689 * 155.35917 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7295 -1.6965 -1.1193 6 7 1.7066 -0.2499 -2.4546 7 6 0.8653 0.9288 -2.7341 8 6 1.2908 1.3918 -4.1534 9 6 1.5488 0.0383 -4.8528 10 6 2.1259 -0.8438 -3.7343 11 6 0.2410 -0.5426 -5.3730 12 6 0.5095 -1.9091 -6.0141 13 7 1.5689 -1.7574 -7.0208 14 6 1.3697 -2.1752 -8.3096 15 1 0.3725 -2.1919 -8.7238 16 6 2.4496 -2.5773 -9.0835 17 7 3.5921 -2.8879 -8.5085 18 14 2.2814 -2.6778 -10.9412 19 1 0.9065 -2.2790 -11.3360 20 1 3.2635 -1.7634 -11.5774 21 1 2.5406 -4.0704 -11.3871 22 6 2.8458 -1.1501 -6.6211 23 6 2.5620 0.2116 -5.9764 24 6 2.0400 -0.7213 1.2492 25 1 3.1300 -0.7335 1.2499 26 6 1.5214 -0.0061 2.5153 27 6 1.1918 -1.1976 3.4553 28 6 0.7095 -2.2555 2.4310 29 8 1.5391 -2.0630 1.2741 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.1892 0.6531 -2.7229 34 1 1.0603 1.7151 -2.0049 35 1 2.1998 1.9921 -4.1163 36 1 0.4844 1.9374 -4.6434 37 1 3.2140 -0.8589 -3.7976 38 1 1.7326 -1.8567 -3.8200 39 1 -0.4589 -0.6604 -4.5458 40 1 -0.1852 0.1304 -6.1169 41 1 -0.3997 -2.2737 -6.4921 42 1 0.8311 -2.6152 -5.2486 43 1 4.3468 -3.1686 -9.0493 44 1 3.4769 -1.0145 -7.4994 45 1 3.3493 -1.7970 -5.9026 46 1 2.1598 0.8923 -6.7267 47 1 3.4870 0.6222 -5.5716 48 1 2.2963 0.6266 2.9481 49 1 0.6270 0.5759 2.2932 50 1 2.0820 -1.5394 3.9834 51 1 0.3981 -0.9375 4.1556 52 1 -0.3373 -2.0876 2.1781 53 1 0.8464 -3.2599 2.8317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040840816.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:21 Heat of formation + Delta-G solvation = -80.339294 kcal Electronic energy + Delta-G solvation = -31180.239708 eV Core-core repulsion = 27244.249727 eV Total energy + Delta-G solvation = -3935.989980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.79952 -40.71517 -39.36911 -37.38248 -35.14328 -34.31265 -32.90055 -32.65825 -31.68189 -30.49887 -29.32148 -28.01509 -26.64318 -25.42373 -24.27905 -23.73986 -22.85052 -22.23645 -21.75956 -19.96989 -19.73881 -18.47959 -18.07822 -17.61090 -17.01416 -16.89749 -16.72444 -16.55038 -15.74868 -15.60222 -15.44441 -15.20223 -14.93047 -14.67140 -14.53058 -14.44665 -14.22974 -13.76137 -13.71367 -13.27267 -13.15051 -13.08790 -13.05772 -12.96904 -12.62903 -12.60315 -12.49812 -12.44953 -12.38618 -12.07444 -11.99278 -11.95046 -11.89637 -11.87421 -11.51635 -11.44467 -11.07100 -10.99941 -10.66852 -10.53569 -10.40031 -9.61470 -8.68029 -7.87518 -5.33810 1.45140 1.46239 1.57671 1.69921 2.02374 2.50579 2.97667 3.25408 3.44780 3.55878 3.63119 3.68981 3.73730 3.82415 3.84850 3.99551 4.09649 4.18251 4.24913 4.27841 4.40107 4.41322 4.42269 4.52433 4.61440 4.65831 4.68505 4.75432 4.76340 4.80104 4.84077 4.86115 4.94058 4.95981 4.97597 5.01864 5.04263 5.10705 5.13520 5.17258 5.22364 5.29618 5.34810 5.38509 5.42987 5.43858 5.52628 5.64317 5.76736 6.25127 6.38213 6.62585 7.13765 7.24405 7.85545 8.37788 9.18659 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025312 B = 0.002560 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.911241 B =10936.566492 C =11314.068532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 H 0.135 0.865 4 C 0.518 3.482 5 O -0.588 6.588 6 N -0.617 5.617 7 C 0.098 3.902 8 C -0.115 4.115 9 C -0.053 4.053 10 C 0.126 3.874 11 C -0.102 4.102 12 C 0.137 3.863 13 N -0.608 5.608 14 C -0.259 4.259 15 H 0.069 0.931 16 C -0.056 4.056 17 N -0.939 5.939 18 Si 0.969 3.031 19 H -0.263 1.263 20 H -0.289 1.289 21 H -0.296 1.296 22 C 0.177 3.823 23 C -0.112 4.112 24 C 0.091 3.909 25 H 0.057 0.943 26 C -0.143 4.143 27 C -0.148 4.148 28 C 0.034 3.966 29 O -0.398 6.398 30 H 0.040 0.960 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.054 0.946 42 H -0.003 1.003 43 H 0.249 0.751 44 H 0.052 0.948 45 H -0.018 1.018 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.098 0.902 49 H 0.106 0.894 50 H 0.074 0.926 51 H 0.108 0.892 52 H 0.067 0.933 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.140 15.954 23.772 30.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 H 0.153 0.847 4 C 0.309 3.691 5 O -0.467 6.467 6 N -0.351 5.351 7 C -0.023 4.023 8 C -0.153 4.153 9 C -0.053 4.053 10 C 0.003 3.997 11 C -0.141 4.141 12 C 0.012 3.988 13 N -0.331 5.331 14 C -0.389 4.389 15 H 0.087 0.913 16 C -0.251 4.251 17 N -0.586 5.586 18 Si 0.797 3.203 19 H -0.187 1.187 20 H -0.215 1.215 21 H -0.223 1.223 22 C 0.051 3.949 23 C -0.151 4.151 24 C 0.033 3.967 25 H 0.075 0.925 26 C -0.180 4.180 27 C -0.185 4.185 28 C -0.043 4.043 29 O -0.318 6.318 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.015 0.985 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.000 1.000 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.117 0.883 49 H 0.124 0.876 50 H 0.093 0.907 51 H 0.126 0.874 52 H 0.085 0.915 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.601 15.192 23.681 29.728 hybrid contribution 0.866 -1.264 -1.304 2.012 sum -8.735 13.928 22.377 27.767 Atomic orbital electron populations 1.21955 0.90869 1.02507 1.04943 1.21762 0.99656 1.01005 0.90491 0.84715 1.21153 0.79421 0.84096 0.84457 1.90713 1.40544 1.28669 1.86806 1.48757 1.51312 1.30567 1.04434 1.22815 0.94952 0.86794 0.97756 1.22930 1.03512 0.94864 0.94011 1.20876 0.95729 0.95812 0.92932 1.21755 0.97822 0.96598 0.83505 1.21734 0.95624 0.96835 0.99859 1.21118 0.91509 0.95523 0.90675 1.44326 1.12791 1.69471 1.06523 1.19589 0.93924 1.36705 0.88718 0.91288 1.25867 0.96942 0.99388 1.02881 1.70232 1.03722 1.49375 1.35241 0.85176 0.77994 0.76658 0.80432 1.18681 1.21540 1.22295 1.20594 0.87415 0.90485 0.96397 1.21884 0.98016 0.98042 0.97131 1.22597 0.97455 0.82281 0.94370 0.92454 1.23295 1.03681 0.98323 0.92732 1.23242 1.02825 0.94499 0.97951 1.23618 0.94869 1.00250 0.85517 1.88637 1.66981 1.30079 1.46064 0.94088 0.88287 0.89978 0.89442 0.87201 0.89897 0.87183 0.94587 0.94747 0.90443 0.90710 0.92788 0.98537 0.94240 0.92918 0.99985 0.91330 0.91894 0.88318 0.87590 0.90742 0.87389 0.91502 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.57 71.98 0.62 -1.41 16 2 C -0.11 -2.05 1.98 -11.54 -0.02 -2.07 16 3 H 0.14 1.62 7.85 -2.39 -0.02 1.60 16 4 C 0.52 16.15 7.08 87.66 0.62 16.77 16 5 O -0.59 -25.44 15.68 13.34 0.21 -25.23 16 6 N -0.62 -17.45 3.33 -811.82 -2.70 -20.16 16 7 C 0.10 1.67 4.82 86.96 0.42 2.09 16 8 C -0.12 -2.24 6.00 31.88 0.19 -2.05 16 9 C -0.05 -1.61 0.53 -51.91 -0.03 -1.64 16 10 C 0.13 4.58 5.06 86.48 0.44 5.01 16 11 C -0.10 -3.22 4.78 30.46 0.15 -3.07 16 12 C 0.14 5.93 6.22 86.40 0.54 6.46 16 13 N -0.61 -31.53 2.98 -698.62 -2.08 -33.62 16 14 C -0.26 -14.61 9.58 84.03 0.80 -13.81 16 15 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 16 C -0.06 -3.22 4.90 84.86 0.42 -2.81 16 17 N -0.94 -58.16 11.19 21.65 0.24 -57.92 16 18 Si 0.97 45.96 29.59 68.60 2.03 47.99 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 22 C 0.18 8.90 5.05 86.40 0.44 9.34 16 23 C -0.11 -4.11 4.71 30.46 0.14 -3.97 16 24 C 0.09 1.91 2.78 31.06 0.09 2.00 16 25 H 0.06 1.45 8.09 -2.38 -0.02 1.43 16 26 C -0.14 -1.51 6.34 31.86 0.20 -1.31 16 27 C -0.15 -1.63 7.16 32.05 0.23 -1.40 16 28 C 0.03 0.60 7.76 72.65 0.56 1.16 16 29 O -0.40 -11.08 9.32 -132.62 -1.24 -12.31 16 30 H 0.04 0.80 7.66 -2.39 -0.02 0.78 16 31 H 0.10 0.73 6.07 -2.39 -0.01 0.71 16 32 H 0.08 0.91 4.98 -2.38 -0.01 0.90 16 33 H 0.09 1.25 6.67 -2.39 -0.02 1.23 16 34 H 0.11 1.10 7.35 -2.39 -0.02 1.09 16 35 H 0.08 1.53 8.01 -2.39 -0.02 1.51 16 36 H 0.11 1.62 8.01 -2.38 -0.02 1.60 16 37 H 0.04 1.49 7.59 -2.38 -0.02 1.47 16 38 H 0.03 1.49 6.07 -2.39 -0.01 1.48 16 39 H 0.08 2.05 7.47 -2.39 -0.02 2.03 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.05 2.27 7.93 -2.39 -0.02 2.25 16 42 H 0.00 -0.15 6.53 -2.39 -0.02 -0.17 16 43 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.05 3.00 6.02 -2.39 -0.01 2.98 16 45 H -0.02 -1.01 7.47 -2.38 -0.02 -1.03 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.06 2.14 8.10 -2.38 -0.02 2.12 16 48 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.11 0.65 5.74 -2.39 -0.01 0.64 16 50 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 52 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -82.68 387.54 3.15 -79.53 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.89 Total: 12.41 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 5.80 Total: 9.30 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -4.54 Total: -111.69 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.03 Total: -37.54 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -82.68 3.15 -79.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040840816.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.808 kcal (2) G-P(sol) polarization free energy of solvation -82.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds