Wall clock time and date at job start Tue Mar 31 2020 19:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47344 * 2 1 4 4 C 1.53000 * 109.46892 * 240.00019 * 2 1 3 5 5 C 1.50699 * 109.46991 * 65.00287 * 4 2 1 6 6 O 1.21287 * 120.00078 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99866 * 180.02562 * 5 4 2 8 8 C 1.47672 * 134.45702 * 179.97438 * 7 5 4 9 9 C 1.53508 * 85.98296 * 204.28349 * 8 7 5 10 10 C 1.47669 * 134.46198 * 359.94391 * 7 5 4 11 11 C 1.52663 * 113.56845 * 222.24185 * 9 8 7 12 12 C 1.53329 * 109.16794 * 171.14159 * 11 9 8 13 13 N 1.46891 * 108.76541 * 52.38940 * 12 11 9 14 14 C 1.36934 * 120.49178 * 124.37815 * 13 12 11 15 15 H 1.07998 * 120.00735 * 332.13194 * 14 13 12 16 16 C 1.38820 * 119.99995 * 152.13865 * 14 13 12 17 17 N 1.31616 * 120.00214 * 159.31672 * 16 14 13 18 18 Si 1.86806 * 119.99630 * 339.31421 * 16 14 13 19 19 H 1.48500 * 109.47086 * 93.82393 * 18 16 14 20 20 H 1.48500 * 109.46788 * 213.82077 * 18 16 14 21 21 H 1.48503 * 109.47182 * 333.82415 * 18 16 14 22 22 C 1.46892 * 119.00810 * 304.39268 * 13 12 11 23 23 C 1.52663 * 113.57016 * 90.99577 * 9 8 7 24 24 C 1.52999 * 109.47336 * 120.00359 * 2 1 3 25 25 H 1.08994 * 109.82657 * 60.56293 * 24 2 1 26 26 C 1.54382 * 109.82854 * 299.58609 * 24 2 1 27 27 C 1.55308 * 102.25497 * 219.12877 * 26 24 2 28 28 C 1.54949 * 100.93888 * 34.13294 * 27 26 24 29 29 O 1.43233 * 109.83188 * 181.45565 * 24 2 1 30 30 H 1.09005 * 109.47206 * 299.99970 * 1 2 3 31 31 H 1.08999 * 109.47336 * 59.99397 * 1 2 3 32 32 H 1.08999 * 109.47344 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47675 * 304.99909 * 4 2 1 34 34 H 1.08996 * 109.46919 * 184.99457 * 4 2 1 35 35 H 1.09001 * 113.78985 * 90.01820 * 8 7 5 36 36 H 1.08994 * 113.78987 * 318.55114 * 8 7 5 37 37 H 1.08998 * 113.78677 * 41.44642 * 10 7 5 38 38 H 1.08991 * 113.78970 * 269.98344 * 10 7 5 39 39 H 1.08991 * 109.52580 * 51.23343 * 11 9 8 40 40 H 1.09002 * 109.52017 * 291.04260 * 11 9 8 41 41 H 1.09002 * 109.58337 * 292.60828 * 12 11 9 42 42 H 1.09001 * 109.58971 * 172.17369 * 12 11 9 43 43 H 0.96993 * 119.99863 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.58950 * 175.40153 * 22 13 12 45 45 H 1.08995 * 109.59424 * 295.68904 * 22 13 12 46 46 H 1.08997 * 109.52369 * 68.96400 * 23 9 8 47 47 H 1.09001 * 109.52379 * 308.76908 * 23 9 8 48 48 H 1.09001 * 110.85090 * 337.32274 * 26 24 2 49 49 H 1.09005 * 110.85180 * 100.93870 * 26 24 2 50 50 H 1.08996 * 111.12427 * 276.21428 * 27 26 24 51 51 H 1.09000 * 111.12480 * 152.05212 * 27 26 24 52 52 H 1.08996 * 110.31148 * 204.64211 * 28 27 26 53 53 H 1.09001 * 110.38982 * 82.51442 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0109 1.0871 -2.3632 7 7 1.9843 -0.3918 -3.7002 8 6 1.7703 0.0947 -5.0779 9 6 1.9441 -1.3690 -5.5066 10 6 2.7253 -1.5671 -4.2005 11 6 2.7965 -1.5405 -6.7613 12 6 3.0888 -3.0310 -6.9715 13 7 1.8194 -3.7696 -6.9463 14 6 1.4606 -4.5707 -7.9974 15 1 1.8198 -4.3502 -8.9917 16 6 0.6350 -5.6662 -7.7848 17 7 -0.0361 -6.1892 -8.7890 18 14 0.4765 -6.3982 -6.0735 19 1 -0.6944 -5.7982 -5.3850 20 1 0.2893 -7.8676 -6.1791 21 1 1.7087 -6.1107 -5.2961 22 6 0.9405 -3.6358 -5.7770 23 6 0.6331 -2.1495 -5.5587 24 6 2.0400 -0.7213 1.2492 25 1 1.6882 -1.7529 1.2500 26 6 1.5386 0.0060 2.5153 27 6 2.7718 -0.0804 3.4553 28 6 3.9300 0.0216 2.4310 29 8 3.4719 -0.6962 1.2742 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6053 -1.7198 -1.2952 34 1 3.1262 -0.7994 -1.2057 35 1 2.5591 0.7550 -5.4385 36 1 0.7696 0.4888 -5.2545 37 1 2.4835 -2.4936 -3.6798 38 1 3.7978 -1.4009 -4.3002 39 1 3.7347 -0.9989 -6.6412 40 1 2.2572 -1.1500 -7.6243 41 1 3.7377 -3.3921 -6.1736 42 1 3.5765 -3.1753 -7.9356 43 1 -0.6132 -6.9544 -8.6404 44 1 0.0121 -4.1789 -5.9536 45 1 1.4391 -4.0411 -4.8966 46 1 0.0213 -1.7795 -6.3815 47 1 0.0961 -2.0230 -4.6187 48 1 1.2914 1.0443 2.2940 49 1 0.6837 -0.5136 2.9482 50 1 2.7972 -1.0335 3.9834 51 1 2.7916 0.7550 4.1552 52 1 4.8314 -0.4422 2.8316 53 1 4.1223 1.0642 2.1777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050741459.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:34 Heat of formation + Delta-G solvation = -53.080581 kcal Electronic energy + Delta-G solvation = -30521.979618 eV Core-core repulsion = 26587.171665 eV Total energy + Delta-G solvation = -3934.807954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.92612 -40.74838 -39.62780 -37.69977 -35.67907 -34.33118 -33.04957 -32.42638 -32.00848 -30.15940 -28.85945 -27.72713 -27.26265 -25.64563 -24.45301 -24.13801 -22.74100 -22.40543 -21.11078 -20.19467 -19.57903 -18.43491 -18.04224 -17.72901 -17.26615 -16.99344 -16.84541 -16.50220 -15.90355 -15.77757 -15.56393 -15.24277 -15.09571 -14.86193 -14.55468 -14.47610 -14.24705 -13.99739 -13.67973 -13.61622 -13.45892 -13.34537 -13.18616 -12.90648 -12.82644 -12.73810 -12.52397 -12.25748 -12.18413 -12.14166 -12.09464 -11.85060 -11.72397 -11.63911 -11.61291 -11.42528 -11.36960 -11.23693 -10.67464 -10.59876 -10.38036 -9.65449 -8.86503 -8.13617 -5.44315 1.31769 1.42738 1.51715 1.62952 1.85678 2.44316 2.89756 3.08245 3.28302 3.41886 3.43144 3.59308 3.75941 3.80178 3.92819 3.99172 4.06016 4.08160 4.13240 4.24305 4.37838 4.38735 4.46661 4.48556 4.50828 4.59689 4.62525 4.63252 4.68076 4.71655 4.77739 4.80097 4.83388 4.88196 4.90127 4.90904 4.94339 5.01060 5.02935 5.04575 5.11401 5.19959 5.22851 5.24622 5.32552 5.34068 5.42177 5.55693 5.91892 6.11578 6.16973 6.73873 6.97289 7.15553 7.67842 8.07583 9.06468 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.002716 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.244609 B =10304.980313 C =11020.678951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 H 0.061 0.939 4 C -0.122 4.122 5 C 0.529 3.471 6 O -0.583 6.583 7 N -0.644 5.644 8 C 0.115 3.885 9 C -0.077 4.077 10 C 0.115 3.885 11 C -0.108 4.108 12 C 0.143 3.857 13 N -0.619 5.619 14 C -0.243 4.243 15 H 0.052 0.948 16 C -0.039 4.039 17 N -0.960 5.960 18 Si 0.945 3.055 19 H -0.281 1.281 20 H -0.315 1.315 21 H -0.253 1.253 22 C 0.126 3.874 23 C -0.099 4.099 24 C 0.084 3.916 25 H 0.085 0.915 26 C -0.149 4.149 27 C -0.151 4.151 28 C 0.040 3.960 29 O -0.400 6.400 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.056 0.944 43 H 0.260 0.740 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.084 0.916 51 H 0.097 0.903 52 H 0.094 0.906 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 14.180 24.425 29.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 H 0.080 0.920 4 C -0.162 4.162 5 C 0.321 3.679 6 O -0.464 6.464 7 N -0.378 5.378 8 C -0.007 4.007 9 C -0.078 4.078 10 C -0.007 4.007 11 C -0.148 4.148 12 C 0.019 3.981 13 N -0.343 5.343 14 C -0.372 4.372 15 H 0.070 0.930 16 C -0.233 4.233 17 N -0.606 5.606 18 Si 0.774 3.226 19 H -0.208 1.208 20 H -0.244 1.244 21 H -0.176 1.176 22 C 0.001 3.999 23 C -0.138 4.138 24 C 0.026 3.974 25 H 0.103 0.897 26 C -0.186 4.186 27 C -0.189 4.189 28 C -0.036 4.036 29 O -0.320 6.320 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.096 0.904 49 H 0.114 0.886 50 H 0.103 0.897 51 H 0.115 0.885 52 H 0.112 0.888 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.828 14.588 24.486 29.558 hybrid contribution -0.733 -0.639 0.079 0.976 sum 7.095 13.949 24.565 29.126 Atomic orbital electron populations 1.21870 0.93986 1.02062 1.02625 1.21188 0.96436 0.99042 0.92889 0.92014 1.21616 1.03728 0.99920 0.90891 1.20869 0.78320 0.84747 0.83960 1.90628 1.42677 1.26667 1.86416 1.50188 1.55337 1.27359 1.04916 1.23332 1.02282 0.96288 0.78835 1.21848 0.95992 0.94502 0.95466 1.23466 0.97775 0.88395 0.91068 1.21828 0.99766 0.97301 0.95857 1.21147 0.86153 0.90732 1.00103 1.44460 1.19027 1.52586 1.18256 1.18874 1.26495 1.03975 0.87904 0.93043 1.25933 0.99056 0.98084 1.00261 1.69974 1.30630 1.26499 1.33540 0.85929 0.78816 0.75947 0.81925 1.20793 1.24401 1.17649 1.21318 0.93633 0.95429 0.89472 1.21580 0.95993 0.95465 1.00738 1.22849 0.80624 0.99605 0.94274 0.89668 1.23192 0.99454 1.01733 0.94225 1.23272 0.93411 1.04135 0.98041 1.23549 0.98279 0.96659 0.85072 1.88399 1.20817 1.76189 1.46562 0.91263 0.93031 0.92258 0.88219 0.87896 0.87700 0.91449 0.89834 0.86792 0.88278 0.92488 0.93703 0.92547 0.93156 0.93912 0.94288 0.92705 0.91886 0.90431 0.88628 0.89729 0.88455 0.88789 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.70 71.98 0.63 -2.32 16 2 C -0.08 -1.52 1.68 -10.79 -0.02 -1.54 16 3 H 0.06 1.45 7.96 -2.39 -0.02 1.43 16 4 C -0.12 -2.59 4.86 29.85 0.15 -2.45 16 5 C 0.53 14.38 7.77 87.66 0.68 15.06 16 6 O -0.58 -19.70 14.69 -3.05 -0.04 -19.74 16 7 N -0.64 -15.90 3.44 -842.38 -2.90 -18.80 16 8 C 0.11 2.73 7.97 86.32 0.69 3.41 16 9 C -0.08 -1.97 0.77 -52.04 -0.04 -2.01 16 10 C 0.11 2.46 7.42 86.31 0.64 3.10 16 11 C -0.11 -2.78 5.25 30.59 0.16 -2.62 16 12 C 0.14 4.79 6.39 86.42 0.55 5.34 16 13 N -0.62 -27.22 2.73 -698.73 -1.91 -29.13 16 14 C -0.24 -13.37 10.01 84.04 0.84 -12.53 16 15 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 16 C -0.04 -2.25 5.23 84.86 0.44 -1.81 16 17 N -0.96 -60.26 13.97 21.65 0.30 -59.96 16 18 Si 0.94 45.79 24.38 68.60 1.67 47.46 16 19 H -0.28 -13.06 6.65 99.48 0.66 -12.39 16 20 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 21 H -0.25 -11.35 6.64 99.48 0.66 -10.69 16 22 C 0.13 5.04 4.08 86.42 0.35 5.40 16 23 C -0.10 -3.20 5.21 30.59 0.16 -3.04 16 24 C 0.08 1.36 3.08 31.06 0.10 1.46 16 25 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 26 C -0.15 -1.75 5.46 31.86 0.17 -1.57 16 27 C -0.15 -1.45 7.16 32.05 0.23 -1.22 16 28 C 0.04 0.53 7.78 72.65 0.56 1.10 16 29 O -0.40 -7.59 10.34 -148.98 -1.54 -9.13 16 30 H 0.07 1.13 7.06 -2.38 -0.02 1.11 16 31 H 0.05 1.35 5.95 -2.39 -0.01 1.33 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.91 16 34 H 0.10 2.09 7.60 -2.39 -0.02 2.07 16 35 H 0.11 2.05 8.09 -2.39 -0.02 2.03 16 36 H 0.07 1.77 8.09 -2.39 -0.02 1.75 16 37 H 0.08 1.81 7.44 -2.39 -0.02 1.79 16 38 H 0.11 1.88 8.07 -2.39 -0.02 1.86 16 39 H 0.10 1.83 8.12 -2.39 -0.02 1.81 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.04 1.34 8.09 -2.39 -0.02 1.32 16 42 H 0.06 1.97 7.92 -2.39 -0.02 1.95 16 43 H 0.26 15.56 8.31 -92.71 -0.77 14.78 16 44 H 0.04 1.96 4.39 -2.39 -0.01 1.95 16 45 H 0.04 1.46 6.57 -2.39 -0.02 1.44 16 46 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.06 1.94 8.01 -2.39 -0.02 1.92 16 48 H 0.08 0.96 7.57 -2.39 -0.02 0.94 16 49 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 50 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -71.99 397.48 2.66 -69.33 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.78 Total: 16.20 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 6.30 Total: 3.76 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -4.50 Total: -107.89 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -1.59 Total: -28.87 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.67 Total: 47.46 kcal Total: -71.99 2.66 -69.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050741459.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.254 kcal (2) G-P(sol) polarization free energy of solvation -71.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds