Wall clock time and date at job start Tue Mar 31 2020 19:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46776 * 2 1 4 4 C 1.53000 * 109.47120 * 240.00333 * 2 1 3 5 5 C 1.50703 * 109.47211 * 64.99419 * 4 2 1 6 6 O 1.21279 * 119.99983 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99795 * 180.02562 * 5 4 2 8 8 C 1.47667 * 134.45069 * 180.02562 * 7 5 4 9 9 C 1.53514 * 85.97243 * 204.28989 * 8 7 5 10 10 C 1.47666 * 134.45896 * 359.96918 * 7 5 4 11 11 C 1.52674 * 113.57023 * 91.02080 * 9 8 7 12 12 C 1.53339 * 109.11345 * 73.80758 * 11 9 8 13 13 N 1.46886 * 108.76219 * 52.40319 * 12 11 9 14 14 C 1.36931 * 120.46152 * 124.47695 * 13 12 11 15 15 H 1.07997 * 120.00531 * 331.71275 * 14 13 12 16 16 C 1.38810 * 120.00118 * 151.71496 * 14 13 12 17 17 N 1.31625 * 119.99767 * 342.48227 * 16 14 13 18 18 Si 1.86800 * 120.00386 * 162.20574 * 16 14 13 19 19 H 1.48494 * 109.47013 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47218 * 120.00077 * 18 16 14 21 21 H 1.48501 * 109.47298 * 239.99749 * 18 16 14 22 22 C 1.46878 * 119.06973 * 304.74717 * 13 12 11 23 23 C 1.52676 * 113.56251 * 222.22963 * 9 8 7 24 24 C 1.52992 * 109.47493 * 120.00346 * 2 1 3 25 25 H 1.09003 * 110.27978 * 180.64213 * 24 2 1 26 26 C 1.54953 * 110.30735 * 302.83488 * 24 2 1 27 27 C 1.55304 * 100.94087 * 155.36504 * 26 24 2 28 28 C 1.54382 * 102.24972 * 325.86224 * 27 26 24 29 29 O 1.43233 * 107.59333 * 21.36343 * 28 27 26 30 30 H 1.09003 * 109.47694 * 60.00240 * 1 2 3 31 31 H 1.09005 * 109.46776 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47441 * 299.99643 * 1 2 3 33 33 H 1.09002 * 109.47213 * 304.99933 * 4 2 1 34 34 H 1.09000 * 109.47313 * 184.99732 * 4 2 1 35 35 H 1.09004 * 113.79280 * 90.03288 * 8 7 5 36 36 H 1.08997 * 113.90227 * 318.56605 * 8 7 5 37 37 H 1.08997 * 113.78872 * 41.43868 * 10 7 5 38 38 H 1.09001 * 113.79171 * 269.97410 * 10 7 5 39 39 H 1.08996 * 109.53150 * 313.91421 * 11 9 8 40 40 H 1.08995 * 109.59211 * 193.73146 * 11 9 8 41 41 H 1.09002 * 109.58854 * 292.62368 * 12 11 9 42 42 H 1.08992 * 109.70936 * 172.25985 * 12 11 9 43 43 H 0.96998 * 120.00135 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.58942 * 175.04464 * 22 13 12 45 45 H 1.09002 * 109.59156 * 295.47605 * 22 13 12 46 46 H 1.09002 * 109.52592 * 46.08558 * 23 9 8 47 47 H 1.09000 * 109.53189 * 166.23045 * 23 9 8 48 48 H 1.09005 * 111.12104 * 273.28035 * 26 24 2 49 49 H 1.08997 * 111.12276 * 37.43708 * 26 24 2 50 50 H 1.09010 * 110.84241 * 207.67830 * 27 26 24 51 51 H 1.08992 * 111.02615 * 84.13575 * 27 26 24 52 52 H 1.09004 * 109.83005 * 261.84441 * 28 27 26 53 53 H 1.08998 * 109.83022 * 140.87829 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0115 1.0874 -2.3633 7 7 1.9843 -0.3919 -3.7002 8 6 1.7710 0.0952 -5.0778 9 6 1.9437 -1.3687 -5.5066 10 6 2.7251 -1.5673 -4.2004 11 6 0.6320 -2.1481 -5.5597 12 6 -0.1665 -1.7038 -6.7911 13 7 0.6958 -1.8068 -7.9758 14 6 0.3046 -2.5512 -9.0565 15 1 -0.3519 -3.3977 -8.9201 16 6 0.7520 -2.2177 -10.3275 17 7 1.2527 -1.0221 -10.5563 18 14 0.6508 -3.4682 -11.7114 19 1 0.0585 -4.7290 -11.1969 20 1 -0.2010 -2.9310 -12.8028 21 1 2.0139 -3.7386 -12.2350 22 6 1.9861 -1.1051 -7.9824 23 6 2.7962 -1.5406 -6.7615 24 6 2.0400 -0.7213 1.2491 25 1 3.1299 -0.7190 1.2681 26 6 1.4765 -0.0487 2.5263 27 6 1.5450 -1.2276 3.5349 28 6 1.2501 -2.4466 2.6346 29 8 1.5436 -2.0688 1.2845 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6054 -1.7197 -1.2953 34 1 3.1263 -0.7994 -1.2057 35 1 2.5603 0.7549 -5.4382 36 1 0.7711 0.4907 -5.2566 37 1 2.4830 -2.4937 -3.6797 38 1 3.7977 -1.4013 -4.3001 39 1 0.0527 -1.9484 -4.6583 40 1 0.8434 -3.2151 -5.6281 41 1 -0.4903 -0.6708 -6.6636 42 1 -1.0375 -2.3470 -6.9161 43 1 1.5657 -0.7891 -11.4443 44 1 2.5338 -1.3559 -8.8908 45 1 1.8172 -0.0291 -7.9404 46 1 3.6931 -0.9265 -6.6796 47 1 3.0799 -2.5875 -6.8687 48 1 2.1092 0.7792 2.8461 49 1 0.4483 0.2804 2.3758 50 1 0.7828 -1.1223 4.3071 51 1 2.5371 -1.3047 3.9795 52 1 0.1997 -2.7245 2.7209 53 1 1.8810 -3.2852 2.9293 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050741461.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:46 Heat of formation + Delta-G solvation = -53.068490 kcal Electronic energy + Delta-G solvation = -30239.580724 eV Core-core repulsion = 26304.773294 eV Total energy + Delta-G solvation = -3934.807429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.86208 -40.71670 -39.55477 -37.50869 -35.54647 -34.24749 -32.98469 -32.28818 -31.48036 -30.02014 -28.81994 -27.97541 -27.06066 -25.85954 -24.33877 -23.92813 -22.61578 -22.38933 -20.86354 -20.00288 -19.47285 -18.43457 -18.01540 -17.60512 -17.02272 -16.86838 -16.75136 -16.38627 -15.80660 -15.65454 -15.43983 -15.28791 -15.00951 -14.90583 -14.69149 -14.49806 -14.00397 -13.87685 -13.67927 -13.39968 -13.22944 -13.05727 -12.92346 -12.88631 -12.65742 -12.59151 -12.55142 -12.30984 -12.25041 -12.22440 -11.97710 -11.80910 -11.79992 -11.70806 -11.38287 -11.29630 -11.25473 -11.21795 -10.59471 -10.45973 -10.34377 -9.63058 -8.63596 -7.85018 -5.30517 1.47290 1.49588 1.59913 1.66967 1.87804 2.53098 2.92282 3.26355 3.37313 3.47610 3.64522 3.71482 3.77825 3.87224 4.00350 4.04947 4.06321 4.14912 4.25431 4.29662 4.37691 4.47808 4.49500 4.51189 4.60016 4.62812 4.67308 4.73606 4.77761 4.80062 4.84980 4.87919 4.89101 4.93232 4.95516 4.98718 5.03909 5.06888 5.15253 5.16023 5.21327 5.26595 5.32572 5.37062 5.37817 5.51211 5.56049 5.68208 5.82363 6.17474 6.42577 6.80359 7.18381 7.18876 7.89609 8.40638 9.20782 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029089 B = 0.002142 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.315797 B =13071.467507 C =13349.216315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 H 0.081 0.919 4 C -0.116 4.116 5 C 0.526 3.474 6 O -0.586 6.586 7 N -0.641 5.641 8 C 0.112 3.888 9 C -0.076 4.076 10 C 0.120 3.880 11 C -0.092 4.092 12 C 0.143 3.857 13 N -0.607 5.607 14 C -0.259 4.259 15 H 0.064 0.936 16 C -0.051 4.051 17 N -0.934 5.934 18 Si 0.965 3.035 19 H -0.267 1.267 20 H -0.296 1.296 21 H -0.288 1.288 22 C 0.175 3.825 23 C -0.111 4.111 24 C 0.086 3.914 25 H 0.082 0.918 26 C -0.157 4.157 27 C -0.150 4.150 28 C 0.043 3.957 29 O -0.397 6.397 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.003 0.997 42 H 0.050 0.950 43 H 0.249 0.751 44 H 0.055 0.945 45 H -0.007 1.007 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.086 0.914 52 H 0.067 0.933 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 -2.201 28.310 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 H 0.099 0.901 4 C -0.156 4.156 5 C 0.318 3.682 6 O -0.468 6.468 7 N -0.376 5.376 8 C -0.011 4.011 9 C -0.077 4.077 10 C -0.001 4.001 11 C -0.131 4.131 12 C 0.018 3.982 13 N -0.331 5.331 14 C -0.390 4.390 15 H 0.082 0.918 16 C -0.246 4.246 17 N -0.580 5.580 18 Si 0.794 3.206 19 H -0.191 1.191 20 H -0.223 1.223 21 H -0.214 1.214 22 C 0.050 3.950 23 C -0.150 4.150 24 C 0.029 3.971 25 H 0.100 0.900 26 C -0.194 4.194 27 C -0.187 4.187 28 C -0.033 4.033 29 O -0.317 6.317 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.021 0.979 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.011 0.989 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.113 0.887 49 H 0.099 0.901 50 H 0.110 0.890 51 H 0.105 0.895 52 H 0.085 0.915 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.996 -1.680 28.266 28.944 hybrid contribution -0.401 0.074 -1.280 1.343 sum 5.594 -1.606 26.986 27.606 Atomic orbital electron populations 1.21863 0.95181 1.01403 1.01788 1.20994 0.96644 0.98880 0.92352 0.90054 1.21596 1.03746 1.00020 0.90203 1.21051 0.78372 0.84780 0.84004 1.90637 1.42750 1.26956 1.86424 1.50212 1.55382 1.27455 1.04517 1.23176 1.01062 0.97322 0.79519 1.21887 0.96566 0.94315 0.94917 1.23499 0.97463 0.88745 0.90413 1.21542 0.94686 0.99648 0.97251 1.20979 0.93061 0.96860 0.87330 1.44277 1.16820 1.57860 1.14129 1.19520 1.27672 1.05778 0.85982 0.91806 1.25784 1.02085 0.97390 0.99391 1.70197 1.47238 1.19365 1.21215 0.85239 0.77033 0.79217 0.79138 1.19134 1.22321 1.21447 1.20516 0.85907 0.92309 0.96287 1.21830 0.97444 1.01919 0.93847 1.23058 0.97985 0.81664 0.94368 0.90016 1.23429 1.03001 0.98995 0.94017 1.23103 1.03870 0.93379 0.98354 1.23244 1.00873 0.97835 0.81397 1.88393 1.85697 1.30042 1.27567 0.93620 0.93038 0.91740 0.88097 0.87086 0.89404 0.92882 0.88032 0.87086 0.91976 0.91024 0.97873 0.93123 0.94157 0.92625 0.98863 0.90274 0.91600 0.88674 0.90146 0.88987 0.89538 0.91513 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.47 71.98 0.61 -2.64 16 2 C -0.07 -1.35 2.01 -10.80 -0.02 -1.37 16 3 H 0.08 1.68 7.96 -2.38 -0.02 1.66 16 4 C -0.12 -2.34 4.74 29.85 0.14 -2.19 16 5 C 0.53 14.87 7.77 87.66 0.68 15.55 16 6 O -0.59 -21.20 14.69 -3.03 -0.04 -21.24 16 7 N -0.64 -17.30 3.44 -842.56 -2.90 -20.20 16 8 C 0.11 3.49 7.62 86.32 0.66 4.15 16 9 C -0.08 -2.22 0.77 -52.03 -0.04 -2.26 16 10 C 0.12 2.54 7.75 86.32 0.67 3.21 16 11 C -0.09 -3.00 5.22 30.60 0.16 -2.84 16 12 C 0.14 6.02 6.38 86.42 0.55 6.57 16 13 N -0.61 -30.08 2.97 -699.70 -2.08 -32.16 16 14 C -0.26 -14.16 9.55 84.03 0.80 -13.36 16 15 H 0.06 3.43 7.89 -2.91 -0.02 3.40 16 16 C -0.05 -2.84 4.90 84.86 0.42 -2.43 16 17 N -0.93 -55.05 11.21 21.65 0.24 -54.80 16 18 Si 0.97 44.65 29.59 68.60 2.03 46.68 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 20 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 22 C 0.18 8.11 5.20 86.26 0.45 8.56 16 23 C -0.11 -3.67 5.24 30.44 0.16 -3.51 16 24 C 0.09 1.29 3.19 31.26 0.10 1.39 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 C -0.16 -1.79 6.45 32.05 0.21 -1.58 16 27 C -0.15 -1.32 7.02 31.85 0.22 -1.10 16 28 C 0.04 0.53 7.79 72.45 0.56 1.10 16 29 O -0.40 -7.07 9.90 -148.98 -1.47 -8.55 16 30 H 0.04 1.31 5.95 -2.39 -0.01 1.30 16 31 H 0.05 1.17 7.69 -2.38 -0.02 1.15 16 32 H 0.06 1.23 6.05 -2.39 -0.01 1.21 16 33 H 0.10 2.02 7.91 -2.39 -0.02 2.00 16 34 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.09 2.61 8.07 -2.39 -0.02 2.59 16 36 H 0.05 1.93 7.41 -2.39 -0.02 1.92 16 37 H 0.10 1.76 8.09 -2.39 -0.02 1.74 16 38 H 0.11 1.83 8.09 -2.39 -0.02 1.81 16 39 H 0.06 1.90 8.01 -2.39 -0.02 1.89 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.00 0.15 7.49 -2.39 -0.02 0.13 16 42 H 0.05 2.12 7.92 -2.39 -0.02 2.10 16 43 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 44 H 0.06 2.94 5.98 -2.39 -0.01 2.93 16 45 H -0.01 -0.34 8.07 -2.39 -0.02 -0.36 16 46 H 0.08 2.22 8.12 -2.39 -0.02 2.20 16 47 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 49 H 0.08 1.03 5.74 -2.39 -0.01 1.02 16 50 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 51 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 52 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 53 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -69.90 401.23 2.98 -66.92 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.87 Total: 16.11 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 6.33 Total: 7.24 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -4.73 Total: -107.17 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -1.52 Total: -29.79 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.90 2.98 -66.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050741461.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.855 kcal (2) G-P(sol) polarization free energy of solvation -69.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds