Wall clock time and date at job start Tue Mar 31 2020 20:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99677 * 2 1 4 4 H 1.08998 * 109.47708 * 330.00809 * 3 2 1 5 5 C 1.53007 * 109.46716 * 90.00553 * 3 2 1 6 6 C 1.50699 * 109.47364 * 210.00072 * 3 2 1 7 7 O 1.21286 * 119.99705 * 355.00372 * 6 3 2 8 8 N 1.34775 * 120.00357 * 175.00423 * 6 3 2 9 9 C 1.46931 * 120.63017 * 359.72023 * 8 6 3 10 10 C 1.52757 * 109.00835 * 233.58937 * 9 8 6 11 11 C 1.53043 * 109.38073 * 305.58278 * 10 9 8 12 12 C 1.52998 * 109.46144 * 181.26200 * 11 10 9 13 13 H 1.08999 * 113.01375 * 189.01352 * 12 11 10 14 14 N 1.47791 * 113.82671 * 321.03498 * 12 11 10 15 15 C 1.36936 * 134.37271 * 270.31742 * 14 12 11 16 16 H 1.08003 * 120.00019 * 359.97438 * 15 14 12 17 17 C 1.38812 * 119.99897 * 180.02562 * 15 14 12 18 18 N 1.31621 * 119.99916 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99940 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47252 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47111 * 119.99596 * 19 17 15 22 22 H 1.48492 * 109.46903 * 239.99570 * 19 17 15 23 23 C 1.47786 * 91.24860 * 90.33223 * 14 12 11 24 24 C 1.52967 * 85.76406 * 23.87529 * 23 14 12 25 25 C 1.52799 * 121.29710 * 102.44969 * 24 23 14 26 26 C 1.53975 * 86.74100 * 101.24461 * 25 24 23 27 27 C 1.52802 * 121.29813 * 211.46739 * 24 23 14 28 28 C 1.53046 * 109.53549 * 61.24402 * 11 10 9 29 29 C 1.46930 * 120.63049 * 180.02562 * 8 6 3 30 30 H 1.09001 * 109.47196 * 299.99310 * 1 2 3 31 31 H 1.08997 * 109.47598 * 59.99558 * 1 2 3 32 32 H 1.09002 * 109.47062 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47285 * 59.99979 * 5 3 2 34 34 H 1.09004 * 109.46669 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47130 * 299.99889 * 5 3 2 36 36 H 1.08997 * 109.58034 * 353.42073 * 9 8 6 37 37 H 1.08997 * 109.58726 * 113.84315 * 9 8 6 38 38 H 1.09000 * 109.55978 * 185.55364 * 10 9 8 39 39 H 1.08989 * 109.36210 * 65.49773 * 10 9 8 40 40 H 1.09001 * 109.46293 * 301.22648 * 11 10 9 41 41 H 0.97000 * 119.99659 * 180.02562 * 18 17 15 42 42 H 1.08998 * 113.82441 * 269.66102 * 23 14 12 43 43 H 1.08996 * 113.93372 * 138.10356 * 23 14 12 44 44 H 1.08998 * 113.66771 * 215.70116 * 25 24 23 45 45 H 1.08992 * 113.67368 * 346.78338 * 25 24 23 46 46 H 1.09001 * 113.57384 * 270.03222 * 26 25 24 47 47 H 1.09001 * 113.64678 * 139.26606 * 26 25 24 48 48 H 1.09002 * 113.66858 * 13.21863 * 27 24 23 49 49 H 1.08997 * 113.66433 * 144.20312 * 27 24 23 50 50 H 1.09006 * 109.49355 * 178.68230 * 28 11 10 51 51 H 1.09001 * 109.49613 * 58.58682 * 28 11 10 52 52 H 1.09005 * 109.58311 * 246.15247 * 29 8 6 53 53 H 1.09000 * 109.58656 * 6.57938 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 -0.5137 5 6 2.2176 1.7713 1.4426 6 6 3.3385 1.2640 -0.7104 7 8 3.7896 0.2046 -1.0915 8 7 4.0253 2.4041 -0.9223 9 6 3.4890 3.6958 -0.4720 10 6 3.4634 4.6632 -1.6540 11 6 4.8601 4.7441 -2.2744 12 6 4.8440 5.7364 -3.4388 13 1 5.7652 5.7248 -4.0214 14 7 3.6155 5.6755 -4.2581 15 6 3.2359 4.9615 -5.3632 16 1 3.9203 4.2569 -5.8122 17 6 1.9718 5.1440 -5.9068 18 7 1.1379 6.0030 -5.3599 19 14 1.4541 4.1704 -7.4147 20 1 2.5654 3.2791 -7.8340 21 1 0.2586 3.3521 -7.0891 22 1 1.1271 5.1066 -8.5200 23 6 2.9604 6.6928 -3.4095 24 6 4.3779 7.1400 -3.0480 25 6 5.0009 8.3865 -3.6746 26 6 4.6643 9.1095 -2.3574 27 6 4.6984 7.7295 -1.6753 28 6 5.2729 3.3626 -2.7875 29 6 5.3214 2.3798 -1.6140 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.8829 1.0774 1.9563 34 1 2.6613 2.7669 1.4426 35 1 1.2568 1.8012 1.9565 36 1 2.4767 3.5586 -0.0920 37 1 4.1251 4.1013 0.3148 38 1 3.1605 5.6521 -1.3097 39 1 2.7543 4.3040 -2.3996 40 1 5.5732 5.0797 -1.5213 41 1 0.2544 6.1302 -5.7396 42 1 2.4034 6.2744 -2.5712 43 1 2.3932 7.4366 -3.9690 44 1 6.0707 8.2940 -3.8618 45 1 4.4500 8.7659 -4.5351 46 1 3.6778 9.5731 -2.3544 47 1 5.4494 9.7841 -2.0160 48 1 3.9060 7.5847 -0.9410 49 1 5.6822 7.4504 -1.2981 50 1 6.2579 3.4258 -3.2502 51 1 4.5468 3.0156 -3.5226 52 1 6.1102 2.6756 -0.9223 53 1 5.5176 1.3746 -1.9871 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093358330.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:04 Heat of formation + Delta-G solvation = -11.128039 kcal Electronic energy + Delta-G solvation = -31877.563159 eV Core-core repulsion = 27944.574404 eV Total energy + Delta-G solvation = -3932.988755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.95242 -41.10450 -38.92309 -38.00273 -36.48200 -34.53068 -33.57870 -32.34710 -31.54905 -29.06040 -27.93638 -27.71747 -26.50304 -25.60308 -24.77756 -24.37546 -23.58405 -22.04605 -21.19096 -20.06123 -18.74918 -18.67242 -18.16090 -17.70787 -17.04603 -16.82099 -16.30437 -16.20206 -16.02370 -15.90173 -15.68403 -15.55817 -15.19485 -14.71102 -14.55544 -14.15001 -14.01417 -13.95958 -13.64632 -13.45683 -13.28523 -13.08660 -13.02705 -12.93860 -12.78636 -12.67688 -12.43640 -12.24579 -12.21469 -12.13838 -12.04386 -11.84937 -11.69630 -11.36738 -11.17395 -11.12637 -10.98267 -10.77103 -10.66152 -10.49489 -10.41941 -9.63786 -8.70117 -7.85797 -5.11583 1.37279 1.39517 1.46858 1.49399 1.78039 2.46430 2.87594 3.34778 3.42130 3.42346 3.70956 3.80394 3.90488 3.95932 4.02022 4.03022 4.08557 4.18345 4.20161 4.26143 4.41332 4.42700 4.47737 4.48108 4.61719 4.66127 4.73171 4.77763 4.79029 4.80572 4.82644 4.88818 4.92228 5.02465 5.06381 5.10083 5.15991 5.19495 5.24430 5.25263 5.29501 5.35871 5.44146 5.56490 5.61967 5.71762 5.74830 5.77450 5.85213 6.01638 6.06633 6.37680 7.02459 7.09781 7.70291 8.69637 9.30936 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009281 B = 0.004613 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.352205 B = 6068.706261 C = 7702.020096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.068 3.932 4 H 0.093 0.907 5 C -0.166 4.166 6 C 0.506 3.494 7 O -0.582 6.582 8 N -0.600 5.600 9 C 0.101 3.899 10 C -0.120 4.120 11 C -0.075 4.075 12 C 0.154 3.846 13 H 0.045 0.955 14 N -0.618 5.618 15 C -0.206 4.206 16 H 0.066 0.934 17 C -0.063 4.063 18 N -0.947 5.947 19 Si 0.953 3.047 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.293 1.293 23 C 0.177 3.823 24 C -0.110 4.110 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.111 4.111 28 C -0.117 4.117 29 C 0.119 3.881 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.029 0.971 40 H 0.105 0.895 41 H 0.243 0.757 42 H 0.044 0.956 43 H 0.021 0.979 44 H 0.088 0.912 45 H 0.032 0.968 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.103 0.897 50 H 0.079 0.921 51 H 0.024 0.976 52 H 0.101 0.899 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.572 1.290 18.125 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.007 3.993 4 H 0.111 0.889 5 C -0.224 4.224 6 C 0.294 3.706 7 O -0.462 6.462 8 N -0.334 5.334 9 C -0.020 4.020 10 C -0.158 4.158 11 C -0.095 4.095 12 C 0.048 3.952 13 H 0.063 0.937 14 N -0.342 5.342 15 C -0.335 4.335 16 H 0.084 0.916 17 C -0.256 4.256 18 N -0.598 5.598 19 Si 0.784 3.216 20 H -0.200 1.200 21 H -0.226 1.226 22 H -0.220 1.220 23 C 0.052 3.948 24 C -0.111 4.111 25 C -0.156 4.156 26 C -0.165 4.165 27 C -0.148 4.148 28 C -0.156 4.156 29 C -0.003 4.003 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.111 0.889 39 H 0.048 0.952 40 H 0.123 0.877 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.039 0.961 44 H 0.106 0.894 45 H 0.051 0.949 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.094 0.906 49 H 0.121 0.879 50 H 0.098 0.902 51 H 0.043 0.957 52 H 0.119 0.881 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.718 0.463 17.645 18.554 hybrid contribution -1.187 -0.698 -2.097 2.509 sum 4.530 -0.235 15.547 16.196 Atomic orbital electron populations 1.23079 0.78826 1.04252 1.01179 1.87973 1.21765 1.26409 1.95235 1.22062 0.92069 0.86538 0.98655 0.88901 1.22374 1.04655 1.03074 0.92261 1.21022 0.86965 0.83496 0.79113 1.90645 1.70737 1.31578 1.53221 1.48157 1.21174 1.06944 1.57077 1.22236 1.00957 0.81578 0.97266 1.22010 0.97375 0.99757 0.96628 1.21334 0.97159 0.93688 0.97347 1.22235 0.89655 0.92868 0.90445 0.93725 1.46239 1.14021 1.46345 1.27590 1.19187 0.97171 1.15284 1.01874 0.91567 1.25257 0.97019 1.01433 1.01901 1.69971 1.07368 1.39497 1.42921 0.85367 0.77645 0.78112 0.80498 1.20035 1.22584 1.22030 1.22165 0.92020 0.89313 0.91292 1.23095 0.97006 0.93099 0.97892 1.22590 1.00125 0.95726 0.97205 1.22737 1.01657 0.96788 0.95280 1.22733 1.02730 0.94764 0.94619 1.21777 1.01170 0.95674 0.96959 1.21610 0.84583 0.99784 0.94343 0.91236 0.94204 0.88174 0.91949 0.88219 0.89102 0.88520 0.87238 0.88870 0.95165 0.87724 0.94759 0.93868 0.96095 0.89394 0.94873 0.91321 0.89637 0.90573 0.87903 0.90236 0.95699 0.88133 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.82 113.37 1.23 1.69 16 2 O -0.40 -11.68 9.89 -129.99 -1.28 -12.96 16 3 C 0.07 1.75 2.30 29.85 0.07 1.82 16 4 H 0.09 2.25 7.06 -2.39 -0.02 2.24 16 5 C -0.17 -2.81 9.10 71.98 0.66 -2.16 16 6 C 0.51 16.64 7.12 87.66 0.62 17.27 16 7 O -0.58 -24.65 15.92 15.94 0.25 -24.39 16 8 N -0.60 -16.57 2.98 -819.80 -2.44 -19.01 16 9 C 0.10 2.12 4.94 86.22 0.43 2.55 16 10 C -0.12 -3.42 3.59 30.53 0.11 -3.31 16 11 C -0.07 -2.09 1.87 -10.76 -0.02 -2.11 16 12 C 0.15 5.47 4.23 44.73 0.19 5.66 16 13 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 14 N -0.62 -29.41 2.82 -708.94 -2.00 -31.42 16 15 C -0.21 -11.44 10.70 84.03 0.90 -10.54 16 16 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 17 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 18 N -0.95 -56.73 11.40 21.65 0.25 -56.48 16 19 Si 0.95 47.60 29.55 68.60 2.03 49.63 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 22 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 23 C 0.18 7.67 6.30 86.12 0.54 8.22 16 24 C -0.11 -3.53 0.86 -52.29 -0.05 -3.58 16 25 C -0.12 -3.60 7.86 30.86 0.24 -3.35 16 26 C -0.13 -2.93 8.08 31.24 0.25 -2.68 16 27 C -0.11 -2.41 6.52 30.86 0.20 -2.21 16 28 C -0.12 -3.61 5.36 30.66 0.16 -3.45 16 29 C 0.12 3.24 6.43 86.35 0.56 3.80 16 30 H 0.07 1.03 7.87 -2.39 -0.02 1.01 16 31 H 0.04 0.84 8.08 -2.39 -0.02 0.82 16 32 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.26 5.43 -2.39 -0.01 1.25 16 35 H 0.09 1.15 7.87 -2.39 -0.02 1.13 16 36 H 0.10 1.76 4.68 -2.39 -0.01 1.75 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 2.46 4.52 -2.39 -0.01 2.45 16 39 H 0.03 1.22 7.14 -2.39 -0.02 1.20 16 40 H 0.10 2.15 7.90 -2.39 -0.02 2.13 16 41 H 0.24 14.34 8.31 -92.71 -0.77 13.56 16 42 H 0.04 1.84 4.90 -2.39 -0.01 1.83 16 43 H 0.02 1.08 7.20 -2.39 -0.02 1.07 16 44 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.08 1.51 7.37 -2.39 -0.02 1.49 16 49 H 0.10 1.74 8.09 -2.39 -0.02 1.72 16 50 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 51 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 53 H 0.06 2.06 7.00 -2.39 -0.02 2.05 16 Total: -1.00 -77.96 396.29 4.24 -73.71 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.89 Total: 16.47 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 6.56 Total: 4.45 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -4.20 Total: -106.91 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.03 Total: -37.35 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -77.96 4.24 -73.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093358330.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.586 kcal (2) G-P(sol) polarization free energy of solvation -77.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds