Wall clock time and date at job start Tue Mar 31 2020 20:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 114.00098 * 2 1 4 4 H 1.09003 * 109.47226 * 30.00342 * 3 2 1 5 5 C 1.53001 * 109.47298 * 270.00008 * 3 2 1 6 6 C 1.50707 * 109.47183 * 149.99817 * 3 2 1 7 7 O 1.21281 * 119.99733 * 9.43719 * 6 3 2 8 8 N 1.34770 * 120.00155 * 189.43638 * 6 3 2 9 9 C 1.46933 * 120.60455 * 185.37060 * 8 6 3 10 10 C 1.53195 * 108.77326 * 233.58040 * 9 8 6 11 11 C 1.53047 * 109.33350 * 305.41378 * 10 9 8 12 12 C 1.53006 * 109.45741 * 181.36897 * 11 10 9 13 13 H 1.08995 * 113.00766 * 294.27676 * 12 11 10 14 14 N 1.47780 * 113.82608 * 162.41895 * 12 11 10 15 15 C 1.36937 * 134.37767 * 41.89413 * 14 12 11 16 16 H 1.08007 * 119.99411 * 0.02562 * 15 14 12 17 17 C 1.38809 * 120.00519 * 179.97438 * 15 14 12 18 18 N 1.31626 * 119.99568 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00158 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46993 * 90.00489 * 19 17 15 21 21 H 1.48500 * 109.46783 * 210.00053 * 19 17 15 22 22 H 1.48497 * 109.46911 * 330.00330 * 19 17 15 23 23 C 1.48037 * 91.14730 * 221.96373 * 14 12 11 24 24 C 1.52956 * 85.81349 * 23.76781 * 23 14 12 25 25 C 1.52803 * 121.30179 * 102.54884 * 24 23 14 26 26 C 1.53970 * 86.74140 * 101.24783 * 25 24 23 27 27 C 1.52794 * 121.30455 * 211.56909 * 24 23 14 28 28 C 1.53031 * 109.54081 * 61.35259 * 11 10 9 29 29 C 1.46924 * 120.63336 * 5.39366 * 8 6 3 30 30 H 1.08996 * 109.46750 * 299.99732 * 1 2 3 31 31 H 1.09001 * 109.47028 * 59.99967 * 1 2 3 32 32 H 1.09004 * 109.47297 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47053 * 55.00041 * 5 3 2 34 34 H 1.09002 * 109.46666 * 174.99977 * 5 3 2 35 35 H 1.08999 * 109.47093 * 294.99574 * 5 3 2 36 36 H 1.08994 * 109.56253 * 113.80527 * 9 8 6 37 37 H 1.09002 * 109.61586 * 353.37629 * 9 8 6 38 38 H 1.08993 * 109.49859 * 185.44485 * 10 9 8 39 39 H 1.09000 * 109.49752 * 65.37871 * 10 9 8 40 40 H 1.08997 * 109.45772 * 301.33458 * 11 10 9 41 41 H 0.96995 * 119.99674 * 179.97438 * 18 17 15 42 42 H 1.09001 * 113.71777 * 269.54742 * 23 14 12 43 43 H 1.09004 * 114.01180 * 138.02155 * 23 14 12 44 44 H 1.08993 * 113.66960 * 215.70870 * 25 24 23 45 45 H 1.09003 * 113.66983 * 346.79059 * 25 24 23 46 46 H 1.09002 * 113.57998 * 270.03730 * 26 25 24 47 47 H 1.09000 * 113.57653 * 139.25608 * 26 25 24 48 48 H 1.08999 * 113.66744 * 13.22123 * 27 24 23 49 49 H 1.08997 * 113.67127 * 144.19942 * 27 24 23 50 50 H 1.08997 * 109.50361 * 58.57975 * 28 11 10 51 51 H 1.09004 * 109.49856 * 178.65214 * 28 11 10 52 52 H 1.09003 * 109.58565 * 6.59786 * 29 8 6 53 53 H 1.09002 * 109.70606 * 246.25101 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.3387 1.2638 0.7105 7 8 3.8278 0.1980 1.0199 8 7 3.9832 2.4110 1.0020 9 6 5.3305 2.3840 1.5876 10 6 5.3286 3.2255 2.8678 11 6 4.8082 4.6294 2.5506 12 6 4.8372 5.4826 3.8203 13 1 4.1463 5.1303 4.5862 14 7 4.7549 6.9359 3.5650 15 6 4.0168 7.7192 2.7185 16 1 3.3048 7.2648 2.0453 17 6 4.1826 9.0974 2.7263 18 7 5.0499 9.6511 3.5471 19 14 3.1751 10.1660 1.5720 20 1 1.9111 10.5637 2.2425 21 1 3.9516 11.3814 1.2186 22 1 2.8617 9.4023 0.3377 23 6 5.7902 7.2044 4.5885 24 6 6.2468 5.7654 4.3427 25 6 7.4828 5.4579 3.4986 26 6 8.2293 5.2437 4.8280 27 6 6.8623 4.9258 5.4612 28 6 3.3718 4.5376 2.0308 29 6 3.3518 3.7116 0.7407 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.2720 1.7167 -1.9815 34 1 2.5778 2.8002 -1.4437 35 1 2.9513 1.1291 -1.9298 36 1 6.0453 2.8002 0.8778 37 1 5.6053 1.3566 1.8262 38 1 6.3432 3.2935 3.2600 39 1 4.6823 2.7570 3.6100 40 1 5.4408 5.0879 1.7905 41 1 5.1661 10.6141 3.5523 42 1 5.3864 7.3739 5.5866 43 1 6.5226 7.9554 4.2921 44 1 7.3889 4.5527 2.8987 45 1 7.8451 6.3117 2.9259 46 1 8.6910 6.1501 5.2198 47 1 8.9111 4.3934 4.8131 48 1 6.7295 5.3551 6.4542 49 1 6.5921 3.8709 5.4157 50 1 2.7436 4.0565 2.7804 51 1 2.9937 5.5395 1.8277 52 1 2.3211 3.5596 0.4201 53 1 3.9029 4.2378 -0.0387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093358333.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:09 Heat of formation + Delta-G solvation = -19.828631 kcal Electronic energy + Delta-G solvation = -31387.830917 eV Core-core repulsion = 27454.464876 eV Total energy + Delta-G solvation = -3933.366041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.81357 -41.08440 -38.92654 -37.97495 -36.51173 -34.53248 -33.57679 -32.61796 -31.57288 -29.07099 -27.92923 -27.64866 -26.49179 -25.36603 -24.84670 -24.27179 -23.56141 -22.12627 -21.35149 -20.09433 -18.70823 -18.66045 -18.33529 -17.71127 -17.02831 -16.88567 -16.38661 -16.33848 -15.92427 -15.78306 -15.60150 -15.42880 -15.10131 -14.78377 -14.50116 -14.26860 -14.04277 -13.86566 -13.64997 -13.49569 -13.32851 -13.07369 -13.02220 -12.87872 -12.78744 -12.74062 -12.49578 -12.28271 -12.17590 -12.06621 -12.04653 -12.01787 -11.87813 -11.58606 -11.17922 -11.01591 -10.91971 -10.79492 -10.69540 -10.53942 -10.34588 -9.63166 -8.78451 -7.80040 -5.10291 1.47778 1.49064 1.50700 1.56984 1.75675 2.52548 2.88584 3.33248 3.41601 3.43617 3.67412 3.77128 3.90016 3.93463 3.97679 3.99123 4.04510 4.13362 4.18870 4.24680 4.39724 4.43521 4.45810 4.53469 4.58736 4.64525 4.69066 4.74195 4.76661 4.81206 4.84741 4.85959 4.89232 4.95291 4.97902 5.04540 5.06332 5.14729 5.17694 5.19522 5.21724 5.31507 5.42293 5.46402 5.56044 5.65915 5.70960 5.74857 5.84793 6.03499 6.05328 6.37264 7.01464 7.10060 7.73444 8.71282 9.38036 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010952 B = 0.003809 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.047022 B = 7349.908985 C = 9354.945371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.395 6.395 3 C 0.069 3.931 4 H 0.107 0.893 5 C -0.166 4.166 6 C 0.511 3.489 7 O -0.574 6.574 8 N -0.601 5.601 9 C 0.114 3.886 10 C -0.118 4.118 11 C -0.069 4.069 12 C 0.164 3.836 13 H 0.035 0.965 14 N -0.623 5.623 15 C -0.208 4.208 16 H 0.095 0.905 17 C -0.075 4.075 18 N -0.959 5.959 19 Si 0.966 3.034 20 H -0.293 1.293 21 H -0.303 1.303 22 H -0.260 1.260 23 C 0.179 3.821 24 C -0.110 4.110 25 C -0.109 4.109 26 C -0.127 4.127 27 C -0.125 4.125 28 C -0.128 4.128 29 C 0.109 3.891 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.242 0.758 42 H 0.004 0.996 43 H 0.034 0.966 44 H 0.103 0.897 45 H 0.040 0.960 46 H 0.067 0.933 47 H 0.088 0.912 48 H 0.058 0.942 49 H 0.098 0.902 50 H 0.058 0.942 51 H 0.071 0.929 52 H 0.105 0.895 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.497 -15.970 -6.372 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.313 6.313 3 C 0.008 3.992 4 H 0.124 0.876 5 C -0.224 4.224 6 C 0.299 3.701 7 O -0.453 6.453 8 N -0.335 5.335 9 C -0.008 4.008 10 C -0.156 4.156 11 C -0.089 4.089 12 C 0.058 3.942 13 H 0.053 0.947 14 N -0.347 5.347 15 C -0.337 4.337 16 H 0.113 0.887 17 C -0.267 4.267 18 N -0.610 5.610 19 Si 0.795 3.205 20 H -0.221 1.221 21 H -0.231 1.231 22 H -0.185 1.185 23 C 0.054 3.946 24 C -0.111 4.111 25 C -0.146 4.146 26 C -0.164 4.164 27 C -0.163 4.163 28 C -0.166 4.166 29 C -0.012 4.012 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.022 0.978 43 H 0.053 0.947 44 H 0.121 0.879 45 H 0.059 0.941 46 H 0.086 0.914 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.116 0.884 50 H 0.077 0.923 51 H 0.089 0.911 52 H 0.123 0.877 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.259 -16.410 -6.378 17.905 hybrid contribution -0.815 1.745 0.016 1.926 sum -4.074 -14.665 -6.362 16.496 Atomic orbital electron populations 1.23100 0.78700 1.04247 1.01394 1.87995 1.21861 1.26287 1.95204 1.22069 0.92405 0.86794 0.97962 0.87597 1.22256 1.04275 1.02566 0.93284 1.20934 0.87221 0.83298 0.78597 1.90660 1.68950 1.30952 1.54776 1.48147 1.17709 1.05846 1.61763 1.21651 0.82789 1.01278 0.95097 1.21953 1.02830 0.93886 0.96959 1.21102 0.96330 0.94468 0.97009 1.22097 0.93480 0.84176 0.94411 0.94723 1.46396 1.45423 1.02138 1.40767 1.19486 1.14495 0.88115 1.11573 0.88733 1.25527 1.01490 0.97965 1.01725 1.70032 1.39748 1.09198 1.42021 0.85244 0.77516 0.78465 0.79226 1.22117 1.23074 1.18481 1.21759 0.89829 0.93115 0.89918 1.23147 0.94124 0.95716 0.98148 1.22671 0.94292 1.01114 0.96561 1.22745 0.96142 1.01727 0.95833 1.22794 0.96216 1.00150 0.97103 1.21948 0.97224 1.00236 0.97178 1.21995 0.99513 0.82187 0.97550 0.93104 0.91839 0.88382 0.89152 0.89238 0.92538 0.90171 0.90002 0.88832 0.92232 0.91750 0.94920 0.97819 0.94722 0.87875 0.94120 0.91417 0.89308 0.92271 0.88354 0.92337 0.91091 0.87704 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.53 16 2 O -0.39 -9.34 9.90 -130.11 -1.29 -10.63 16 3 C 0.07 1.38 2.28 29.85 0.07 1.45 16 4 H 0.11 1.65 6.57 -2.39 -0.02 1.63 16 5 C -0.17 -2.52 9.23 71.98 0.66 -1.86 16 6 C 0.51 13.72 7.04 87.66 0.62 14.34 16 7 O -0.57 -20.44 15.94 15.83 0.25 -20.19 16 8 N -0.60 -14.05 2.97 -818.88 -2.43 -16.48 16 9 C 0.11 2.64 6.44 86.36 0.56 3.20 16 10 C -0.12 -2.81 4.94 30.68 0.15 -2.66 16 11 C -0.07 -2.03 1.38 -10.77 -0.01 -2.05 16 12 C 0.16 6.01 3.53 44.74 0.16 6.16 16 13 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 14 N -0.62 -29.83 3.59 -705.07 -2.53 -32.36 16 15 C -0.21 -10.83 10.17 84.03 0.85 -9.97 16 16 H 0.10 4.52 5.67 -2.91 -0.02 4.51 16 17 C -0.08 -4.15 5.50 84.86 0.47 -3.69 16 18 N -0.96 -57.66 11.42 21.65 0.25 -57.42 16 19 Si 0.97 44.38 29.55 68.60 2.03 46.41 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 23 C 0.18 8.48 7.26 86.07 0.62 9.10 16 24 C -0.11 -3.83 0.89 -52.30 -0.05 -3.88 16 25 C -0.11 -3.27 6.65 30.86 0.21 -3.07 16 26 C -0.13 -3.22 8.08 31.24 0.25 -2.97 16 27 C -0.12 -3.38 7.61 30.85 0.23 -3.14 16 28 C -0.13 -3.45 5.31 30.67 0.16 -3.28 16 29 C 0.11 2.24 5.16 86.36 0.45 2.69 16 30 H 0.05 0.64 8.08 -2.39 -0.02 0.62 16 31 H 0.06 0.64 7.78 -2.39 -0.02 0.62 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.01 7.78 -2.39 -0.02 0.99 16 34 H 0.09 1.12 6.34 -2.39 -0.02 1.11 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 2.08 7.00 -2.39 -0.02 2.06 16 38 H 0.09 2.03 4.67 -2.39 -0.01 2.02 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 2.11 7.66 -2.39 -0.02 2.09 16 41 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.03 1.87 7.22 -2.38 -0.02 1.85 16 44 H 0.10 2.60 5.25 -2.39 -0.01 2.58 16 45 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.10 2.24 7.64 -2.39 -0.02 2.22 16 50 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.07 2.25 5.57 -2.38 -0.01 2.23 16 52 H 0.10 1.61 5.06 -2.39 -0.01 1.60 16 53 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -72.97 395.32 3.79 -69.18 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.89 Total: 19.59 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 6.63 Total: 1.90 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -4.72 Total: -106.26 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.04 Total: -30.82 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -72.97 3.79 -69.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093358333.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.350 kcal (2) G-P(sol) polarization free energy of solvation -72.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds