Wall clock time and date at job start Tue Mar 31 2020 20:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 O 1.42906 * 109.47485 * 239.99743 * 2 1 3 5 5 C 1.42897 * 113.99699 * 90.00005 * 4 2 1 6 6 C 1.53007 * 109.46839 * 180.02562 * 5 4 2 7 7 C 1.52992 * 117.49709 * 243.74552 * 6 5 4 8 8 C 1.53000 * 117.49556 * 175.08339 * 6 5 4 9 9 C 1.50706 * 109.47103 * 120.00046 * 2 1 3 10 10 O 1.21279 * 120.00072 * 119.99944 * 9 2 1 11 11 N 1.34777 * 119.99762 * 299.99738 * 9 2 1 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 2 13 13 C 1.52993 * 109.47551 * 180.02562 * 12 11 9 14 14 C 1.53513 * 111.16030 * 299.11875 * 13 12 11 15 15 C 1.54188 * 106.58708 * 240.87622 * 14 13 12 16 16 C 1.54732 * 104.34783 * 335.42844 * 15 14 13 17 17 C 1.54665 * 111.23175 * 179.97438 * 13 12 11 18 18 H 1.09001 * 112.40292 * 19.49386 * 17 13 12 19 19 N 1.47260 * 106.10813 * 256.40813 * 17 13 12 20 20 C 1.36932 * 126.51997 * 150.10616 * 19 17 13 21 21 H 1.07996 * 120.00327 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99687 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00345 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99754 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47243 * 120.00012 * 24 22 20 27 27 H 1.48503 * 109.47105 * 240.00119 * 24 22 20 28 28 C 1.47157 * 106.95723 * 330.07426 * 19 17 13 29 29 C 1.53681 * 111.17023 * 62.60357 * 13 12 11 30 30 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47280 * 299.99853 * 1 2 3 32 32 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 33 33 H 1.08999 * 109.47029 * 299.99923 * 5 4 2 34 34 H 1.08998 * 109.47326 * 60.00347 * 5 4 2 35 35 H 1.09000 * 115.54882 * 29.42178 * 6 5 4 36 36 H 1.08995 * 117.50359 * 0.02562 * 7 6 5 37 37 H 1.09004 * 117.49713 * 145.02650 * 7 6 5 38 38 H 1.09000 * 117.49983 * 214.97759 * 8 6 5 39 39 H 1.08998 * 117.50160 * 0.02562 * 8 6 5 40 40 H 0.96999 * 120.00047 * 0.02562 * 11 9 2 41 41 H 1.09000 * 109.47024 * 300.00478 * 12 11 9 42 42 H 1.09004 * 109.46875 * 60.00324 * 12 11 9 43 43 H 1.08997 * 110.03826 * 0.98043 * 14 13 12 44 44 H 1.09004 * 110.04530 * 122.43333 * 14 13 12 45 45 H 1.09003 * 110.79894 * 216.49745 * 15 14 13 46 46 H 1.09001 * 110.10756 * 94.02174 * 15 14 13 47 47 H 1.09001 * 110.65740 * 278.62390 * 16 15 14 48 48 H 1.09004 * 110.65365 * 155.53665 * 16 15 14 49 49 H 0.97000 * 120.00367 * 180.02562 * 23 22 20 50 50 H 1.08999 * 110.09057 * 150.06043 * 28 19 17 51 51 H 1.08998 * 110.09196 * 271.65622 * 28 19 17 52 52 H 1.09004 * 110.22766 * 241.06430 * 29 13 12 53 53 H 1.08992 * 110.23211 * 3.01960 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2002 0.1829 -2.2940 6 6 2.7081 -0.6409 -3.4791 7 6 4.1061 -0.3229 -4.0131 8 6 2.8687 0.0764 -4.8210 9 6 2.0323 -0.7104 1.2305 10 8 2.7296 -1.6965 1.1192 11 7 1.7067 -0.2499 2.4546 12 6 2.1945 -0.9408 3.6508 13 6 1.6842 -0.2198 4.9000 14 6 2.1923 1.2279 4.9507 15 6 3.0329 1.3545 6.2371 16 6 2.4824 0.2457 7.1655 17 6 2.1760 -0.9176 6.1896 18 1 3.0402 -1.5578 6.0119 19 7 1.0227 -1.6690 6.7129 20 6 1.0675 -2.8296 7.4383 21 1 2.0192 -3.2802 7.6780 22 6 -0.1105 -3.4269 7.8654 23 7 -1.2704 -2.8780 7.5729 24 14 -0.0494 -5.0097 8.8555 25 1 1.3651 -5.4181 9.0494 26 1 -0.6866 -4.7907 10.1789 27 1 -0.7781 -6.0784 8.1260 28 6 -0.1869 -0.9350 6.3087 29 6 0.1494 -0.2530 4.9719 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.2539 0.6545 -2.5588 34 1 2.9320 0.9512 -2.0450 35 1 2.3859 -1.6820 -3.5004 36 1 4.6642 0.4729 -3.5199 37 1 4.7036 -1.1547 -4.3861 38 1 2.6527 -0.4928 -5.7250 39 1 2.6129 1.1353 -4.8594 40 1 1.1488 0.5385 2.5436 41 1 1.8308 -1.9683 3.6506 42 1 3.2846 -0.9412 3.6510 43 1 2.7992 1.4418 4.0710 44 1 1.3500 1.9180 5.0008 45 1 2.8979 2.3355 6.6927 46 1 4.0856 1.1791 6.0157 47 1 1.5721 0.5786 7.6642 48 1 3.2347 -0.0529 7.8956 49 1 -2.0936 -3.2952 7.8717 50 1 -1.0185 -1.6273 6.1770 51 1 -0.4383 -0.1853 7.0590 52 1 -0.2507 0.7608 4.9551 53 1 -0.2544 -0.8320 4.1414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107316800.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:17 Heat of formation + Delta-G solvation = -58.397782 kcal Electronic energy + Delta-G solvation = -30134.553238 eV Core-core repulsion = 26199.514713 eV Total energy + Delta-G solvation = -3935.038525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.47204 -40.54023 -39.13672 -37.45790 -36.30566 -35.40021 -33.38475 -32.80575 -31.61689 -29.40127 -28.44741 -28.04917 -26.09558 -25.56071 -24.39712 -23.25434 -22.11278 -21.90020 -21.60920 -20.89153 -19.75328 -19.00438 -18.30036 -18.06526 -16.94923 -16.88486 -16.77886 -16.20550 -15.94010 -15.83719 -15.54530 -15.20013 -15.17235 -14.92776 -14.56168 -14.33401 -14.07303 -13.89977 -13.66273 -13.50094 -13.34883 -13.22709 -12.87138 -12.82104 -12.61976 -12.49993 -12.37389 -12.14855 -12.00436 -11.97431 -11.82192 -11.60174 -11.56775 -11.43305 -11.39335 -11.33341 -11.27703 -11.04210 -10.84864 -10.70073 -10.36206 -10.09321 -8.85441 -7.72884 -5.19108 1.44239 1.45273 1.54848 1.56372 1.85052 2.48857 2.71165 3.01534 3.30952 3.52952 3.67054 3.73081 3.77831 3.86469 3.92160 3.97120 4.00265 4.07775 4.15694 4.33546 4.34821 4.40465 4.48202 4.49375 4.56934 4.65381 4.65901 4.69371 4.72144 4.77524 4.77859 4.83756 4.91980 4.97544 5.01282 5.08581 5.15583 5.19522 5.21794 5.22181 5.25134 5.27682 5.39083 5.46211 5.50411 5.52842 5.60862 5.71631 5.90593 6.13712 6.41595 6.58723 7.14382 7.24568 7.82528 8.48459 9.24857 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.002448 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.067144 B =11435.595659 C =12221.402218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.077 3.923 3 H 0.124 0.876 4 O -0.390 6.390 5 C 0.088 3.912 6 C -0.176 4.176 7 C -0.185 4.185 8 C -0.153 4.153 9 C 0.505 3.495 10 O -0.580 6.580 11 N -0.702 5.702 12 C 0.154 3.846 13 C -0.071 4.071 14 C -0.102 4.102 15 C -0.112 4.112 16 C -0.131 4.131 17 C 0.153 3.847 18 H 0.053 0.947 19 N -0.610 5.610 20 C -0.226 4.226 21 H 0.076 0.924 22 C -0.069 4.069 23 N -0.946 5.946 24 Si 0.974 3.026 25 H -0.270 1.270 26 H -0.292 1.292 27 H -0.294 1.294 28 C 0.138 3.862 29 C -0.116 4.116 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.416 0.584 41 H 0.030 0.970 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.046 0.954 48 H 0.049 0.951 49 H 0.245 0.755 50 H 0.083 0.917 51 H -0.014 1.014 52 H 0.089 0.911 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.895 16.515 -20.303 26.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.016 3.984 3 H 0.141 0.859 4 O -0.309 6.309 5 C 0.013 3.987 6 C -0.195 4.195 7 C -0.222 4.222 8 C -0.190 4.190 9 C 0.291 3.709 10 O -0.459 6.459 11 N -0.356 5.356 12 C 0.030 3.970 13 C -0.073 4.073 14 C -0.140 4.140 15 C -0.150 4.150 16 C -0.171 4.171 17 C 0.045 3.955 18 H 0.072 0.928 19 N -0.332 5.332 20 C -0.356 4.356 21 H 0.094 0.906 22 C -0.261 4.261 23 N -0.596 5.596 24 Si 0.803 3.197 25 H -0.194 1.194 26 H -0.219 1.219 27 H -0.221 1.221 28 C 0.013 3.987 29 C -0.155 4.155 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.254 0.746 41 H 0.049 0.951 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.055 0.945 50 H 0.100 0.900 51 H 0.003 0.997 52 H 0.107 0.893 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.297 15.430 -20.275 26.245 hybrid contribution -0.515 -1.105 1.165 1.686 sum 5.782 14.325 -19.110 24.573 Atomic orbital electron populations 1.22265 0.91872 1.03150 1.05233 1.21986 0.96077 0.96894 0.83410 0.85893 1.88030 1.86857 1.35993 1.19991 1.22298 1.00577 0.91707 0.84153 1.22146 1.01709 1.00696 0.94911 1.23170 0.90861 1.03883 1.04286 1.23083 1.00677 1.01802 0.93464 1.21161 0.79722 0.84423 0.85563 1.90706 1.39680 1.28184 1.87328 1.45764 1.53393 1.32216 1.04243 1.21049 0.98087 0.94675 0.83152 1.21854 0.95821 0.96631 0.93010 1.22200 1.00398 0.92865 0.98521 1.22227 0.99463 0.98221 0.95069 1.22875 0.99485 0.96602 0.98142 1.22000 0.90061 0.91611 0.91834 0.92848 1.44803 1.02191 1.24511 1.61645 1.19449 0.92928 0.98605 1.24594 0.90602 1.25523 0.95142 1.02368 1.03082 1.69902 0.96868 1.41039 1.51820 0.85065 0.77543 0.79410 0.77697 1.19440 1.21899 1.22141 1.21637 0.91937 0.93696 0.91466 1.22555 0.94026 1.00901 0.97975 0.93448 0.88851 0.88852 0.90614 0.91856 0.88720 0.88086 0.88764 0.87611 0.86960 0.74590 0.95133 0.91906 0.89729 0.89878 0.90282 0.91089 0.93517 0.93216 0.94482 0.89973 0.99657 0.89250 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.42 71.98 0.68 -1.89 16 2 C 0.08 1.51 3.14 29.85 0.09 1.60 16 3 H 0.12 1.44 7.79 -2.39 -0.02 1.42 16 4 O -0.39 -9.62 9.52 -129.94 -1.24 -10.86 16 5 C 0.09 1.42 6.03 71.98 0.43 1.85 16 6 C -0.18 -2.96 6.05 -10.79 -0.07 -3.02 16 7 C -0.19 -2.62 10.18 30.62 0.31 -2.31 16 8 C -0.15 -1.68 10.26 30.62 0.31 -1.36 16 9 C 0.50 14.42 7.23 87.66 0.63 15.06 16 10 O -0.58 -23.43 16.50 16.01 0.26 -23.16 16 11 N -0.70 -17.18 4.73 -463.07 -2.19 -19.37 16 12 C 0.15 4.91 4.27 86.38 0.37 5.28 16 13 C -0.07 -2.20 0.65 -51.22 -0.03 -2.24 16 14 C -0.10 -2.26 5.62 31.17 0.18 -2.09 16 15 C -0.11 -2.68 6.83 31.59 0.22 -2.47 16 16 C -0.13 -4.52 6.38 31.84 0.20 -4.31 16 17 C 0.15 6.06 3.59 46.06 0.17 6.22 16 18 H 0.05 2.20 7.95 -2.39 -0.02 2.18 16 19 N -0.61 -30.86 2.98 -666.35 -1.99 -32.85 16 20 C -0.23 -12.81 10.33 84.03 0.87 -11.94 16 21 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 22 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 23 N -0.95 -56.65 10.06 21.65 0.22 -56.44 16 24 Si 0.97 46.90 29.55 68.60 2.03 48.92 16 25 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 27 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 28 C 0.14 6.63 5.68 86.52 0.49 7.12 16 29 C -0.12 -3.98 5.81 31.09 0.18 -3.80 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.06 7.56 -2.39 -0.02 1.04 16 32 H 0.09 0.98 7.87 -2.39 -0.02 0.96 16 33 H 0.08 0.86 7.87 -2.39 -0.02 0.84 16 34 H 0.06 0.83 7.82 -2.39 -0.02 0.81 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.10 1.29 8.03 -2.39 -0.02 1.27 16 37 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.42 7.12 7.28 -92.71 -0.67 6.44 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.08 1.51 7.47 -2.39 -0.02 1.50 16 44 H 0.08 1.58 7.10 -2.39 -0.02 1.56 16 45 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.05 1.82 7.28 -2.39 -0.02 1.80 16 48 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 49 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 50 H 0.08 4.63 5.45 -2.39 -0.01 4.61 16 51 H -0.01 -0.74 7.71 -2.39 -0.02 -0.75 16 52 H 0.09 2.44 7.11 -2.39 -0.02 2.43 16 53 H 0.05 1.85 7.62 -2.39 -0.02 1.83 16 Total: -1.00 -77.14 411.10 2.80 -74.34 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.21 Total: 21.20 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 5.50 Total: -1.80 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -3.96 Total: -108.65 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.97 Total: -34.02 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -77.14 2.80 -74.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107316800.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.946 kcal (2) G-P(sol) polarization free energy of solvation -77.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds