Wall clock time and date at job start Tue Mar 31 2020 20:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00247 * 2 1 4 4 C 1.53006 * 109.46866 * 124.99980 * 3 2 1 5 5 O 1.42906 * 109.46748 * 179.97438 * 4 3 2 6 6 C 1.42898 * 113.99821 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46985 * 30.00310 * 6 5 4 8 8 C 1.52999 * 109.47444 * 270.00482 * 6 5 4 9 9 C 1.50693 * 109.47065 * 150.00297 * 6 5 4 10 10 O 1.21283 * 120.00266 * 5.00204 * 9 6 5 11 11 N 1.34781 * 120.00328 * 185.00305 * 9 6 5 12 12 C 1.46497 * 120.00420 * 180.02562 * 11 9 6 13 13 C 1.52997 * 109.47036 * 180.02562 * 12 11 9 14 14 C 1.53355 * 111.22844 * 297.62254 * 13 12 11 15 15 C 1.55534 * 105.84187 * 241.97690 * 14 13 12 16 16 C 1.54688 * 104.34984 * 334.35734 * 15 14 13 17 17 C 1.54578 * 111.31740 * 177.45357 * 13 12 11 18 18 H 1.09000 * 111.92523 * 18.70402 * 17 13 12 19 19 N 1.46890 * 107.36632 * 255.61885 * 17 13 12 20 20 C 1.36939 * 125.25299 * 181.63495 * 19 17 13 21 21 H 1.07997 * 119.99876 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00284 * 179.97438 * 20 19 17 23 23 N 1.31626 * 119.99670 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00144 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47098 * 90.00232 * 24 22 20 26 26 H 1.48506 * 109.47361 * 210.00181 * 24 22 20 27 27 H 1.48498 * 109.47161 * 330.00305 * 24 22 20 28 28 C 1.46744 * 109.50093 * 1.65386 * 19 17 13 29 29 C 1.53861 * 111.26233 * 61.01285 * 13 12 11 30 30 H 1.08001 * 119.99621 * 0.02562 * 1 2 3 31 31 H 1.07998 * 119.99939 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.99621 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.47512 * 5.00103 * 3 2 1 34 34 H 1.09000 * 109.47247 * 244.99812 * 3 2 1 35 35 H 1.09000 * 109.47050 * 299.99952 * 4 3 2 36 36 H 1.09001 * 109.46801 * 60.00064 * 4 3 2 37 37 H 1.09003 * 109.46889 * 299.99886 * 8 6 5 38 38 H 1.09004 * 109.47118 * 59.99436 * 8 6 5 39 39 H 1.08995 * 109.47513 * 179.97438 * 8 6 5 40 40 H 0.97002 * 119.99493 * 0.02562 * 11 9 6 41 41 H 1.08999 * 109.46743 * 299.99473 * 12 11 9 42 42 H 1.08990 * 109.47239 * 59.99438 * 12 11 9 43 43 H 1.09009 * 110.05460 * 1.98168 * 14 13 12 44 44 H 1.08998 * 110.05697 * 123.47326 * 14 13 12 45 45 H 1.09004 * 110.54479 * 215.54801 * 15 14 13 46 46 H 1.09002 * 110.35019 * 93.07311 * 15 14 13 47 47 H 1.08999 * 110.61230 * 278.65416 * 16 15 14 48 48 H 1.08998 * 110.61364 * 155.66433 * 16 15 14 49 49 H 0.96997 * 119.99304 * 179.97438 * 23 22 20 50 50 H 1.09003 * 110.04437 * 221.97431 * 28 19 17 51 51 H 1.08993 * 110.04334 * 100.51288 * 28 19 17 52 52 H 1.09006 * 110.56985 * 212.51610 * 29 13 12 53 53 H 1.08998 * 110.57374 * 335.23973 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1817 5 8 3.7501 2.5703 1.1813 6 6 4.6888 2.6994 2.2510 7 1 5.0649 1.7138 2.5253 8 6 4.0005 3.3370 3.4595 9 6 5.8368 3.5701 1.8095 10 8 5.8070 4.1081 0.7229 11 7 6.8967 3.7511 2.6221 12 6 8.0124 4.5981 2.1932 13 6 9.0767 4.6345 3.2918 14 6 8.5235 5.2552 4.5804 15 6 9.3768 6.5297 4.8381 16 6 10.7231 6.2386 4.1341 17 6 10.3045 5.4670 2.8573 18 1 10.0726 6.1296 2.0234 19 7 11.3783 4.5224 2.5221 20 6 12.6410 4.8705 2.1226 21 1 12.9111 5.9123 2.0331 22 6 13.5739 3.8843 1.8326 23 7 13.2445 2.6145 1.9412 24 14 15.2961 4.3591 1.2869 25 1 16.1739 4.4909 2.4775 26 1 15.8373 3.3093 0.3867 27 1 15.2463 5.6546 0.5627 28 6 10.8891 3.1481 2.6811 29 6 9.6359 3.2291 3.5738 30 1 -0.5399 0.9354 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3588 2.1316 0.0896 34 1 2.6214 1.4025 -0.9314 35 1 2.4773 1.2355 2.1131 36 1 3.7400 0.5063 1.0921 37 1 3.6243 4.3226 3.1852 38 1 3.1700 2.7072 3.7788 39 1 4.7163 3.4351 4.2755 40 1 6.9207 3.3206 3.4910 41 1 8.4471 4.1913 1.2802 42 1 7.6499 5.6084 2.0043 43 1 7.4713 5.5092 4.4513 44 1 8.6413 4.5593 5.4110 45 1 9.5294 6.6782 5.9072 46 1 8.8964 7.4031 4.3971 47 1 11.3601 5.6190 4.7653 48 1 11.2282 7.1683 3.8724 49 1 13.8963 1.9254 1.7382 50 1 11.6506 2.5336 3.1613 51 1 10.6289 2.7294 1.7090 52 1 9.9070 3.1286 4.6248 53 1 8.9117 2.4650 3.2914 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107318258.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:23 Heat of formation + Delta-G solvation = -49.424147 kcal Electronic energy + Delta-G solvation = -29950.482157 eV Core-core repulsion = 26015.832759 eV Total energy + Delta-G solvation = -3934.649399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.22995 -39.24843 -37.88222 -35.38596 -34.73876 -33.96802 -32.16841 -31.50357 -30.23068 -29.26870 -27.79556 -26.69760 -25.13143 -23.91997 -23.77842 -23.00919 -20.77638 -20.14451 -20.06037 -19.73193 -18.36522 -17.42572 -17.17758 -16.74093 -16.08738 -15.63789 -15.28703 -15.07957 -14.89075 -14.76880 -14.24027 -14.06961 -13.68866 -13.61729 -13.45100 -13.09863 -12.92838 -12.80988 -12.62473 -12.48447 -12.43507 -11.84384 -11.53645 -11.49403 -11.42038 -11.39816 -11.26304 -11.13116 -10.81612 -10.72618 -10.66431 -10.26604 -10.15973 -10.10924 -10.00443 -9.84888 -9.72719 -9.58666 -9.52076 -9.39596 -8.86775 -8.58753 -6.80674 -5.65003 -3.03728 1.85650 2.68650 2.83260 3.40850 3.46426 3.48108 3.73534 4.50163 4.53487 4.57249 4.68767 4.72535 4.80177 4.88618 4.92761 4.98530 5.02260 5.02983 5.10347 5.28217 5.40552 5.46787 5.51676 5.54777 5.56371 5.62315 5.72113 5.75661 5.81048 5.82976 5.88015 6.02660 6.08159 6.08980 6.18903 6.24261 6.30318 6.36653 6.38769 6.43218 6.46944 6.61243 6.69245 6.76807 6.85535 6.87265 7.12470 7.55941 7.59336 7.69160 7.87486 8.31081 8.36463 9.25715 9.86755 10.49992 11.40663 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.002351 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.089288 B =11909.347339 C =13048.935250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.094 4.094 4 C 0.064 3.936 5 O -0.357 6.357 6 C 0.072 3.928 7 H 0.086 0.914 8 C -0.169 4.169 9 C 0.510 3.490 10 O -0.521 6.521 11 N -0.720 5.720 12 C 0.142 3.858 13 C -0.082 4.082 14 C -0.111 4.111 15 C -0.122 4.122 16 C -0.130 4.130 17 C 0.173 3.827 18 H 0.047 0.953 19 N -0.596 5.596 20 C -0.219 4.219 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.923 5.923 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.163 3.837 29 C -0.133 4.133 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.399 0.601 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.054 0.946 49 H 0.251 0.749 50 H 0.093 0.907 51 H 0.012 0.988 52 H 0.060 0.940 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.974 -2.819 5.938 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.170 4.170 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.275 6.275 6 C 0.010 3.990 7 H 0.103 0.897 8 C -0.227 4.227 9 C 0.295 3.705 10 O -0.396 6.396 11 N -0.374 5.374 12 C 0.019 3.981 13 C -0.083 4.083 14 C -0.149 4.149 15 C -0.160 4.160 16 C -0.170 4.170 17 C 0.065 3.935 18 H 0.065 0.935 19 N -0.320 5.320 20 C -0.347 4.347 21 H 0.095 0.905 22 C -0.207 4.207 23 N -0.571 5.571 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C 0.038 3.962 29 C -0.172 4.172 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.233 0.767 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.061 0.939 50 H 0.111 0.889 51 H 0.030 0.970 52 H 0.079 0.921 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.817 -2.400 4.892 22.487 hybrid contribution 0.978 -0.311 0.284 1.065 sum -20.839 -2.712 5.176 21.642 Atomic orbital electron populations 1.23899 0.95873 1.02024 1.00850 1.22826 0.96017 0.98066 1.00135 1.20644 0.97885 0.95808 0.98744 1.22541 0.94136 0.86249 0.98366 1.88035 1.53707 1.37175 1.48615 1.21885 0.89508 0.99184 0.88410 0.89664 1.22226 1.01516 1.02513 0.96459 1.20294 0.83018 0.82171 0.85046 1.90730 1.79375 1.48168 1.21301 1.45987 1.19461 1.51409 1.20518 1.21351 0.84985 0.94088 0.97653 1.21873 0.94632 0.97774 0.93978 1.22379 0.98512 0.97485 0.96491 1.22522 0.96852 0.96976 0.99699 1.22992 0.95587 1.00106 0.98317 1.21524 0.86828 0.91147 0.94036 0.93518 1.44333 1.07993 1.00565 1.79065 1.19034 0.85991 0.92424 1.37265 0.90534 1.24780 0.98466 0.95353 1.02108 1.69886 1.33497 0.98418 1.55298 0.86113 0.84362 0.77228 0.78043 1.21703 1.21765 1.20766 1.21434 0.91822 0.87539 0.95416 1.22798 0.99524 0.93912 1.00944 0.88431 0.88320 0.87125 0.90552 0.89785 0.93075 0.92968 0.91045 0.91350 0.90837 0.76699 0.90901 0.91645 0.92207 0.91808 0.92545 0.92398 0.90971 0.92735 0.93870 0.88942 0.96985 0.92085 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.19 14.32 29.01 0.42 -0.78 16 2 C -0.15 -1.07 9.52 -36.03 -0.34 -1.41 16 3 C -0.09 -0.79 6.03 -27.88 -0.17 -0.96 16 4 C 0.06 0.57 5.73 37.16 0.21 0.79 16 5 O -0.36 -4.47 9.53 -55.09 -0.52 -5.00 16 6 C 0.07 0.77 3.13 -27.89 -0.09 0.68 16 7 H 0.09 0.72 7.79 -51.93 -0.40 0.32 16 8 C -0.17 -1.36 9.48 37.16 0.35 -1.01 16 9 C 0.51 7.39 7.18 -10.99 -0.08 7.31 16 10 O -0.52 -10.09 16.51 -14.31 -0.24 -10.32 16 11 N -0.72 -9.30 4.61 -60.30 -0.28 -9.58 16 12 C 0.14 2.25 4.43 -4.05 -0.02 2.23 16 13 C -0.08 -1.30 0.53 -153.05 -0.08 -1.38 16 14 C -0.11 -1.44 5.75 -25.20 -0.14 -1.59 16 15 C -0.12 -1.69 6.88 -24.50 -0.17 -1.86 16 16 C -0.13 -2.30 6.23 -24.82 -0.15 -2.46 16 17 C 0.17 3.41 3.60 -65.86 -0.24 3.17 16 18 H 0.05 0.96 7.93 -51.93 -0.41 0.55 16 19 N -0.60 -14.58 2.99 -162.42 -0.49 -15.06 16 20 C -0.22 -5.95 9.96 -15.06 -0.15 -6.10 16 21 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 22 C -0.01 -0.32 5.48 -17.43 -0.10 -0.42 16 23 N -0.92 -26.69 10.14 55.49 0.56 -26.13 16 24 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.16 3.83 5.65 -3.35 -0.02 3.81 16 29 C -0.13 -2.32 5.77 -25.72 -0.15 -2.47 16 30 H 0.10 0.58 7.84 -52.49 -0.41 0.17 16 31 H 0.10 0.50 8.06 -52.49 -0.42 0.08 16 32 H 0.11 0.68 8.06 -52.49 -0.42 0.25 16 33 H 0.08 0.65 7.79 -51.93 -0.40 0.24 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.38 7.87 -51.93 -0.41 -0.03 16 36 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 39 H 0.07 0.47 7.93 -51.93 -0.41 0.06 16 40 H 0.40 4.05 7.34 -40.82 -0.30 3.76 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.69 7.51 -51.92 -0.39 0.30 16 44 H 0.06 0.78 7.28 -51.93 -0.38 0.40 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 48 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 49 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.09 2.46 6.16 -51.93 -0.32 2.14 16 51 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 52 H 0.06 1.02 7.42 -51.93 -0.39 0.64 16 53 H 0.06 0.86 7.03 -51.93 -0.36 0.50 16 LS Contribution 415.58 15.07 6.26 6.26 Total: -1.00 -32.58 415.58 -10.25 -42.83 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -9.61 Total: 2.36 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -0.91 Total: -2.43 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.20 Total: -50.77 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.76 Total: -15.32 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.58 -10.25 -42.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107318258.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.597 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds