Wall clock time and date at job start Tue Mar 31 2020 20:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00247 * 2 1 4 4 C 1.53006 * 109.46866 * 124.99980 * 3 2 1 5 5 O 1.42906 * 109.46748 * 179.97438 * 4 3 2 6 6 C 1.42898 * 113.99821 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46985 * 30.00310 * 6 5 4 8 8 C 1.52999 * 109.47444 * 270.00482 * 6 5 4 9 9 C 1.50693 * 109.47065 * 150.00297 * 6 5 4 10 10 O 1.21283 * 120.00266 * 5.00204 * 9 6 5 11 11 N 1.34781 * 120.00328 * 185.00305 * 9 6 5 12 12 C 1.46497 * 120.00420 * 180.02562 * 11 9 6 13 13 C 1.52997 * 109.47036 * 180.02562 * 12 11 9 14 14 C 1.53355 * 111.22844 * 297.62254 * 13 12 11 15 15 C 1.55534 * 105.84187 * 241.97690 * 14 13 12 16 16 C 1.54688 * 104.34984 * 334.35734 * 15 14 13 17 17 C 1.54578 * 111.31740 * 177.45357 * 13 12 11 18 18 H 1.09000 * 111.92523 * 18.70402 * 17 13 12 19 19 N 1.46890 * 107.36632 * 255.61885 * 17 13 12 20 20 C 1.36939 * 125.25299 * 181.63495 * 19 17 13 21 21 H 1.07997 * 119.99876 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00284 * 179.97438 * 20 19 17 23 23 N 1.31626 * 119.99670 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00144 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47098 * 90.00232 * 24 22 20 26 26 H 1.48506 * 109.47361 * 210.00181 * 24 22 20 27 27 H 1.48498 * 109.47161 * 330.00305 * 24 22 20 28 28 C 1.46744 * 109.50093 * 1.65386 * 19 17 13 29 29 C 1.53861 * 111.26233 * 61.01285 * 13 12 11 30 30 H 1.08001 * 119.99621 * 0.02562 * 1 2 3 31 31 H 1.07998 * 119.99939 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.99621 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.47512 * 5.00103 * 3 2 1 34 34 H 1.09000 * 109.47247 * 244.99812 * 3 2 1 35 35 H 1.09000 * 109.47050 * 299.99952 * 4 3 2 36 36 H 1.09001 * 109.46801 * 60.00064 * 4 3 2 37 37 H 1.09003 * 109.46889 * 299.99886 * 8 6 5 38 38 H 1.09004 * 109.47118 * 59.99436 * 8 6 5 39 39 H 1.08995 * 109.47513 * 179.97438 * 8 6 5 40 40 H 0.97002 * 119.99493 * 0.02562 * 11 9 6 41 41 H 1.08999 * 109.46743 * 299.99473 * 12 11 9 42 42 H 1.08990 * 109.47239 * 59.99438 * 12 11 9 43 43 H 1.09009 * 110.05460 * 1.98168 * 14 13 12 44 44 H 1.08998 * 110.05697 * 123.47326 * 14 13 12 45 45 H 1.09004 * 110.54479 * 215.54801 * 15 14 13 46 46 H 1.09002 * 110.35019 * 93.07311 * 15 14 13 47 47 H 1.08999 * 110.61230 * 278.65416 * 16 15 14 48 48 H 1.08998 * 110.61364 * 155.66433 * 16 15 14 49 49 H 0.96997 * 119.99304 * 179.97438 * 23 22 20 50 50 H 1.09003 * 110.04437 * 221.97431 * 28 19 17 51 51 H 1.08993 * 110.04334 * 100.51288 * 28 19 17 52 52 H 1.09006 * 110.56985 * 212.51610 * 29 13 12 53 53 H 1.08998 * 110.57374 * 335.23973 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1817 5 8 3.7501 2.5703 1.1813 6 6 4.6888 2.6994 2.2510 7 1 5.0649 1.7138 2.5253 8 6 4.0005 3.3370 3.4595 9 6 5.8368 3.5701 1.8095 10 8 5.8070 4.1081 0.7229 11 7 6.8967 3.7511 2.6221 12 6 8.0124 4.5981 2.1932 13 6 9.0767 4.6345 3.2918 14 6 8.5235 5.2552 4.5804 15 6 9.3768 6.5297 4.8381 16 6 10.7231 6.2386 4.1341 17 6 10.3045 5.4670 2.8573 18 1 10.0726 6.1296 2.0234 19 7 11.3783 4.5224 2.5221 20 6 12.6410 4.8705 2.1226 21 1 12.9111 5.9123 2.0331 22 6 13.5739 3.8843 1.8326 23 7 13.2445 2.6145 1.9412 24 14 15.2961 4.3591 1.2869 25 1 16.1739 4.4909 2.4775 26 1 15.8373 3.3093 0.3867 27 1 15.2463 5.6546 0.5627 28 6 10.8891 3.1481 2.6811 29 6 9.6359 3.2291 3.5738 30 1 -0.5399 0.9354 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3588 2.1316 0.0896 34 1 2.6214 1.4025 -0.9314 35 1 2.4773 1.2355 2.1131 36 1 3.7400 0.5063 1.0921 37 1 3.6243 4.3226 3.1852 38 1 3.1700 2.7072 3.7788 39 1 4.7163 3.4351 4.2755 40 1 6.9207 3.3206 3.4910 41 1 8.4471 4.1913 1.2802 42 1 7.6499 5.6084 2.0043 43 1 7.4713 5.5092 4.4513 44 1 8.6413 4.5593 5.4110 45 1 9.5294 6.6782 5.9072 46 1 8.8964 7.4031 4.3971 47 1 11.3601 5.6190 4.7653 48 1 11.2282 7.1683 3.8724 49 1 13.8963 1.9254 1.7382 50 1 11.6506 2.5336 3.1613 51 1 10.6289 2.7294 1.7090 52 1 9.9070 3.1286 4.6248 53 1 8.9117 2.4650 3.2914 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107318258.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:22 Heat of formation + Delta-G solvation = -68.574849 kcal Electronic energy + Delta-G solvation = -29951.312594 eV Core-core repulsion = 26015.832759 eV Total energy + Delta-G solvation = -3935.479836 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.48000 -40.50176 -38.83466 -36.33199 -35.98561 -35.42016 -33.51174 -32.81785 -31.74489 -29.94616 -29.16625 -28.33161 -26.24824 -25.70319 -24.82783 -23.76656 -22.16268 -21.52306 -21.12299 -20.66563 -19.71020 -18.94529 -18.27043 -17.98154 -16.94409 -16.84149 -16.59497 -16.37424 -16.17231 -15.89285 -15.64615 -15.17666 -15.12173 -14.55641 -14.50084 -14.35788 -14.28915 -13.93982 -13.60039 -13.43589 -13.24210 -13.19258 -13.15570 -12.91735 -12.83316 -12.62694 -12.41965 -12.18687 -12.10303 -12.02452 -11.97414 -11.86173 -11.61602 -11.52563 -11.40739 -11.32525 -11.03456 -10.98894 -10.67721 -10.46758 -10.26140 -10.10820 -8.82662 -7.77205 -5.17193 1.33986 1.44342 1.45896 1.54211 1.57281 1.85952 2.49797 2.90076 3.33344 3.49561 3.65621 3.70266 3.73169 3.92982 3.96401 3.99101 4.11250 4.15801 4.26523 4.28917 4.39112 4.45385 4.45730 4.47889 4.54517 4.60093 4.67079 4.73087 4.75527 4.83734 4.88072 4.89711 4.95551 5.04459 5.05714 5.11508 5.17117 5.19720 5.23919 5.30406 5.37172 5.42501 5.47454 5.54325 5.62954 5.72606 5.73616 5.85434 5.87924 6.11140 6.31922 6.56989 7.15325 7.23204 7.85315 8.46203 9.26464 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.002351 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.089288 B =11909.347339 C =13048.935250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C -0.093 4.093 4 C 0.061 3.939 5 O -0.391 6.391 6 C 0.074 3.926 7 H 0.114 0.886 8 C -0.163 4.163 9 C 0.506 3.494 10 O -0.579 6.579 11 N -0.703 5.703 12 C 0.153 3.847 13 C -0.066 4.066 14 C -0.101 4.101 15 C -0.112 4.112 16 C -0.125 4.125 17 C 0.156 3.844 18 H 0.033 0.967 19 N -0.614 5.614 20 C -0.227 4.227 21 H 0.077 0.923 22 C -0.071 4.071 23 N -0.950 5.950 24 Si 0.974 3.026 25 H -0.284 1.284 26 H -0.297 1.297 27 H -0.274 1.274 28 C 0.167 3.833 29 C -0.117 4.117 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.417 0.583 41 H 0.030 0.970 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.050 0.950 48 H 0.048 0.952 49 H 0.244 0.756 50 H 0.058 0.942 51 H -0.030 1.030 52 H 0.078 0.922 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.306 -2.735 8.761 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.180 4.180 3 C -0.131 4.131 4 C -0.015 4.015 5 O -0.310 6.310 6 C 0.013 3.987 7 H 0.131 0.869 8 C -0.220 4.220 9 C 0.293 3.707 10 O -0.458 6.458 11 N -0.357 5.357 12 C 0.029 3.971 13 C -0.067 4.067 14 C -0.139 4.139 15 C -0.150 4.150 16 C -0.164 4.164 17 C 0.049 3.951 18 H 0.050 0.950 19 N -0.338 5.338 20 C -0.356 4.356 21 H 0.095 0.905 22 C -0.263 4.263 23 N -0.600 5.600 24 Si 0.803 3.197 25 H -0.211 1.211 26 H -0.224 1.224 27 H -0.199 1.199 28 C 0.042 3.958 29 C -0.155 4.155 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.255 0.745 41 H 0.049 0.951 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.054 0.946 50 H 0.076 0.924 51 H -0.012 1.012 52 H 0.096 0.904 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.177 -2.304 7.773 25.500 hybrid contribution 1.693 -0.316 -0.686 1.853 sum -22.484 -2.620 7.087 23.720 Atomic orbital electron populations 1.24079 0.95705 1.02835 0.99461 1.22810 0.96283 0.97584 1.01361 1.20630 0.97778 0.96662 0.98009 1.22713 0.94239 0.85144 0.99409 1.88003 1.54297 1.38929 1.49809 1.22021 0.88215 0.99739 0.88734 0.86877 1.22230 1.02529 1.01794 0.95492 1.21149 0.83811 0.81652 0.84120 1.90706 1.80596 1.50636 1.23868 1.45763 1.18157 1.50672 1.21131 1.21021 0.85735 0.94296 0.96076 1.21746 0.93078 0.96283 0.95640 1.22373 0.99584 0.97224 0.94686 1.22481 0.94054 0.97815 1.00670 1.22813 0.97769 0.98882 0.96968 1.21825 0.87405 0.91223 0.94659 0.94973 1.44602 1.08321 1.01981 1.78911 1.19358 0.87423 0.92469 1.36345 0.90513 1.25575 1.02083 0.95472 1.03150 1.70137 1.34157 0.99107 1.56590 0.85132 0.80154 0.76861 0.77545 1.21068 1.22399 1.19874 1.21196 0.93671 0.86711 0.94249 1.22649 0.96948 0.95604 1.00296 0.88280 0.86882 0.86248 0.90962 0.91552 0.90896 0.92346 0.92567 0.89225 0.88495 0.74493 0.95145 0.91641 0.89500 0.89645 0.90191 0.91113 0.93146 0.93334 0.94644 0.92408 1.01180 0.90356 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 14.32 67.78 0.97 -1.02 16 2 C -0.16 -2.06 9.52 25.64 0.24 -1.81 16 3 C -0.09 -1.53 6.03 29.85 0.18 -1.35 16 4 C 0.06 0.99 5.73 71.98 0.41 1.41 16 5 O -0.39 -9.41 9.53 -129.99 -1.24 -10.65 16 6 C 0.07 1.41 3.13 29.85 0.09 1.51 16 7 H 0.11 1.52 7.79 -2.39 -0.02 1.50 16 8 C -0.16 -2.01 9.48 71.98 0.68 -1.33 16 9 C 0.51 14.13 7.18 87.65 0.63 14.76 16 10 O -0.58 -22.96 16.51 15.95 0.26 -22.70 16 11 N -0.70 -16.71 4.61 -463.09 -2.13 -18.84 16 12 C 0.15 4.77 4.43 86.38 0.38 5.15 16 13 C -0.07 -2.02 0.53 -51.24 -0.03 -2.05 16 14 C -0.10 -2.18 5.75 31.59 0.18 -2.00 16 15 C -0.11 -2.67 6.88 32.04 0.22 -2.45 16 16 C -0.12 -4.28 6.23 31.83 0.20 -4.08 16 17 C 0.16 6.20 3.60 46.12 0.17 6.36 16 18 H 0.03 1.37 7.93 -2.39 -0.02 1.35 16 19 N -0.61 -31.20 2.99 -667.79 -1.99 -33.20 16 20 C -0.23 -12.76 9.96 84.03 0.84 -11.93 16 21 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 22 C -0.07 -4.07 5.48 84.86 0.47 -3.60 16 23 N -0.95 -57.52 10.14 21.65 0.22 -57.30 16 24 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 25 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 27 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 28 C 0.17 8.19 5.65 86.70 0.49 8.68 16 29 C -0.12 -3.92 5.77 31.25 0.18 -3.74 16 30 H 0.10 1.03 7.84 -2.91 -0.02 1.00 16 31 H 0.11 0.90 8.06 -2.91 -0.02 0.87 16 32 H 0.12 1.28 8.06 -2.91 -0.02 1.25 16 33 H 0.07 1.20 7.79 -2.39 -0.02 1.19 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 0.86 7.87 -2.39 -0.02 0.84 16 36 H 0.06 0.86 8.09 -2.39 -0.02 0.84 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.76 7.87 -2.39 -0.02 0.75 16 39 H 0.10 0.74 7.93 -2.39 -0.02 0.72 16 40 H 0.42 6.80 7.34 -92.71 -0.68 6.12 16 41 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.09 1.50 7.51 -2.38 -0.02 1.48 16 44 H 0.08 1.58 7.28 -2.39 -0.02 1.56 16 45 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.05 1.95 8.06 -2.39 -0.02 1.93 16 48 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 50 H 0.06 3.24 6.16 -2.39 -0.01 3.22 16 51 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 52 H 0.08 2.41 7.42 -2.38 -0.02 2.40 16 53 H 0.08 2.29 7.03 -2.39 -0.02 2.27 16 Total: -1.00 -77.64 415.58 3.64 -74.01 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.19 Total: 17.40 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 6.31 Total: 2.49 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -3.91 Total: -109.34 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.97 Total: -33.34 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -77.64 3.64 -74.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107318258.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.433 kcal (2) G-P(sol) polarization free energy of solvation -77.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds