Wall clock time and date at job start Tue Mar 31 2020 20:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50709 * 119.99972 * 2 1 4 4 C 1.52997 * 109.47364 * 124.99682 * 3 2 1 5 5 O 1.42895 * 109.47128 * 180.02562 * 4 3 2 6 6 C 1.42908 * 113.99643 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47446 * 329.99756 * 6 5 4 8 8 C 1.52999 * 109.46991 * 90.00081 * 6 5 4 9 9 C 1.50697 * 109.46724 * 209.99933 * 6 5 4 10 10 O 1.21282 * 120.00339 * 350.72467 * 9 6 5 11 11 N 1.34775 * 120.00326 * 170.72663 * 9 6 5 12 12 C 1.48125 * 127.83648 * 354.86311 * 11 9 6 13 13 C 1.54334 * 104.69279 * 140.24240 * 12 11 9 14 14 H 1.09003 * 111.85211 * 262.43760 * 13 12 11 15 15 C 1.54156 * 108.86184 * 137.43914 * 13 12 11 16 16 C 1.54849 * 104.32948 * 271.23018 * 15 13 12 17 17 C 1.55776 * 102.31019 * 321.13229 * 16 15 13 18 18 C 1.54163 * 103.87901 * 39.34866 * 17 16 15 19 19 C 1.53005 * 111.82018 * 212.52863 * 18 17 16 20 20 N 1.46497 * 109.47016 * 299.26050 * 19 18 17 21 21 C 1.36944 * 119.99515 * 179.97438 * 20 19 18 22 22 H 1.07988 * 120.00205 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99297 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00303 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99289 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47332 * 60.00082 * 25 23 21 27 27 H 1.48497 * 109.46521 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47158 * 299.99421 * 25 23 21 29 29 C 1.48114 * 127.85205 * 174.83914 * 11 9 6 30 30 H 1.08006 * 120.00233 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00132 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.00271 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46479 * 4.99768 * 3 2 1 34 34 H 1.08997 * 109.46670 * 245.00080 * 3 2 1 35 35 H 1.09007 * 109.46834 * 59.99773 * 4 3 2 36 36 H 1.09005 * 109.47000 * 300.00138 * 4 3 2 37 37 H 1.09002 * 109.47216 * 65.28751 * 8 6 5 38 38 H 1.09005 * 109.47164 * 185.28568 * 8 6 5 39 39 H 1.08994 * 109.47253 * 305.28733 * 8 6 5 40 40 H 1.08997 * 110.39257 * 21.43838 * 12 11 9 41 41 H 1.08996 * 110.39108 * 259.03982 * 12 11 9 42 42 H 1.09002 * 110.46442 * 29.93562 * 15 13 12 43 43 H 1.09002 * 110.46323 * 152.51903 * 15 13 12 44 44 H 1.08996 * 110.76058 * 80.12083 * 16 15 13 45 45 H 1.08994 * 110.75909 * 203.31905 * 16 15 13 46 46 H 1.08999 * 111.74406 * 280.25308 * 17 16 15 47 47 H 1.08996 * 109.59559 * 157.39677 * 17 16 15 48 48 H 1.09001 * 109.46926 * 59.26300 * 19 18 17 49 49 H 1.08999 * 109.46912 * 179.25556 * 19 18 17 50 50 H 0.96997 * 120.00174 * 0.02562 * 20 19 18 51 51 H 0.97006 * 119.99640 * 180.02562 * 24 23 21 52 52 H 1.08996 * 110.39322 * 100.95814 * 29 11 9 53 53 H 1.09001 * 110.38930 * 338.57179 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3333 1.1816 5 8 3.7490 2.5710 1.1819 6 6 4.6884 2.6998 2.2511 7 1 4.3365 2.1346 3.1141 8 6 6.0469 2.1557 1.8046 9 6 4.8276 4.1530 2.6251 10 8 4.3202 5.0089 1.9317 11 7 5.5159 4.5015 3.7301 12 6 6.1115 3.6070 4.7495 13 6 7.4664 4.2583 5.0984 14 1 8.2900 3.7995 4.5513 15 6 7.6677 4.2025 6.6257 16 6 7.0135 5.5059 7.1464 17 6 7.4196 6.5404 6.0548 18 6 7.2927 5.7542 4.7348 19 6 8.3203 6.2133 3.6984 20 7 8.1079 7.6306 3.3947 21 6 8.9147 8.2649 2.4880 22 1 9.7072 7.7202 1.9965 23 6 8.7138 9.6080 2.2006 24 7 7.7483 10.2720 2.8000 25 14 9.8139 10.4731 0.9632 26 1 9.6973 9.8025 -0.3566 27 1 9.3958 11.8923 0.8366 28 1 11.2235 10.4123 1.4266 29 6 5.8491 5.8658 4.2008 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1316 0.0895 34 1 2.6212 1.4026 -0.9314 35 1 3.7399 0.5067 1.0921 36 1 2.4771 1.2358 2.1130 37 1 6.4423 2.7791 1.0026 38 1 6.7378 2.1670 2.6477 39 1 5.9287 1.1335 1.4454 40 1 6.2644 2.6098 4.3369 41 1 5.4742 3.5600 5.6325 42 1 7.1655 3.3305 7.0447 43 1 8.7299 4.1855 6.8698 44 1 5.9310 5.3959 7.2105 45 1 7.4297 5.7874 8.1136 46 1 8.4422 6.8919 6.1922 47 1 6.7226 7.3782 6.0679 48 1 9.3253 6.0736 4.0967 49 1 8.2055 5.6253 2.7878 50 1 7.3964 8.1200 3.8364 51 1 7.6077 11.2105 2.5988 52 1 5.1712 6.1684 4.9988 53 1 5.8037 6.5745 3.3738 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112280345.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:15 Heat of formation + Delta-G solvation = -52.539418 kcal Electronic energy + Delta-G solvation = -30333.747692 eV Core-core repulsion = 26398.963205 eV Total energy + Delta-G solvation = -3934.784487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.66476 -39.16376 -37.63141 -35.33251 -34.75955 -34.29281 -32.01551 -31.43679 -29.77705 -29.33125 -28.82030 -26.01354 -25.51306 -24.32455 -23.54733 -22.86571 -22.00404 -20.23497 -20.14013 -19.30585 -18.48978 -17.34443 -17.07515 -16.57826 -16.24700 -15.93448 -15.33101 -15.21889 -14.84676 -14.54774 -14.45172 -13.90136 -13.88233 -13.51180 -13.42633 -13.16956 -13.08122 -12.93319 -12.68289 -12.47838 -12.35393 -12.05126 -11.81756 -11.75906 -11.57632 -11.43479 -11.25111 -11.11441 -10.86538 -10.78455 -10.73843 -10.61222 -10.49736 -10.33370 -10.24985 -10.00136 -9.92368 -9.72238 -9.58871 -9.35203 -8.81027 -8.51784 -6.85420 -5.69890 -2.98068 1.88225 2.72449 2.78728 3.49057 3.53446 3.54396 3.67916 4.35476 4.45503 4.60294 4.64452 4.66909 4.73758 4.76113 4.77021 4.84237 4.97467 5.03535 5.08524 5.13775 5.27635 5.30583 5.34985 5.42893 5.47243 5.52888 5.56690 5.58149 5.63137 5.64559 5.66614 5.75436 5.77921 5.91484 5.99829 6.00855 6.06591 6.18861 6.21099 6.26657 6.29856 6.30920 6.39976 6.52230 6.55656 6.63915 6.79783 6.86541 6.95144 7.71690 7.75436 8.35474 8.48862 9.60172 10.17371 10.52153 11.52943 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010563 B = 0.002949 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.136097 B = 9491.378447 C =11360.210494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C -0.094 4.094 4 C 0.065 3.935 5 O -0.356 6.356 6 C 0.079 3.921 7 H 0.080 0.920 8 C -0.171 4.171 9 C 0.532 3.468 10 O -0.512 6.512 11 N -0.619 5.619 12 C 0.101 3.899 13 C -0.099 4.099 14 H 0.088 0.912 15 C -0.114 4.114 16 C -0.126 4.126 17 C -0.105 4.105 18 C -0.074 4.074 19 C 0.173 3.827 20 N -0.728 5.728 21 C -0.238 4.238 22 H 0.068 0.932 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.287 1.287 29 C 0.118 3.882 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.021 0.979 49 H 0.017 0.983 50 H 0.384 0.616 51 H 0.255 0.745 52 H 0.067 0.933 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.013 -23.930 6.227 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.131 4.131 4 C -0.012 4.012 5 O -0.275 6.275 6 C 0.018 3.982 7 H 0.098 0.902 8 C -0.229 4.229 9 C 0.319 3.681 10 O -0.386 6.386 11 N -0.355 5.355 12 C -0.022 4.022 13 C -0.118 4.118 14 H 0.107 0.893 15 C -0.152 4.152 16 C -0.164 4.164 17 C -0.142 4.142 18 C -0.075 4.075 19 C 0.045 3.955 20 N -0.373 5.373 21 C -0.369 4.369 22 H 0.086 0.914 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.214 1.214 29 C -0.004 4.004 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.039 0.961 49 H 0.035 0.965 50 H 0.218 0.782 51 H 0.065 0.935 52 H 0.085 0.915 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.294 -23.300 5.449 25.325 hybrid contribution 0.437 0.388 -0.367 0.691 sum -7.857 -22.911 5.082 24.748 Atomic orbital electron populations 1.23921 0.95919 1.02084 1.00602 1.22806 0.96017 0.97956 1.00372 1.20649 0.98021 0.95911 0.98558 1.22523 0.93812 0.86392 0.98479 1.88059 1.54252 1.37164 1.47986 1.21798 0.91364 0.93992 0.91075 0.90232 1.22267 0.95457 1.01825 1.03315 1.19878 0.78388 0.90303 0.79540 1.90769 1.45792 1.51623 1.50369 1.48875 1.54666 1.09196 1.22776 1.22658 0.94172 0.94013 0.91373 1.22722 0.96635 0.95925 0.96560 0.89327 1.22339 1.01087 0.97884 0.93847 1.22685 1.00008 0.95212 0.98490 1.22470 1.02628 0.97159 0.91986 1.22267 0.95206 0.93629 0.96432 1.20560 0.94072 0.87280 0.93553 1.42311 1.39455 1.04924 1.50578 1.19138 1.09551 0.92570 1.15683 0.91411 1.24716 0.98920 0.96781 1.00443 1.69641 1.33193 1.09314 1.45947 0.86284 0.79924 0.78739 0.81336 1.21315 1.21716 1.21365 1.22527 0.94067 0.83817 0.99984 0.88335 0.88335 0.87217 0.90371 0.89865 0.93075 0.93217 0.90771 0.90650 0.91341 0.90664 0.90931 0.91769 0.91255 0.91749 0.91703 0.90390 0.91261 0.96116 0.96544 0.78170 0.93501 0.91523 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.30 14.32 29.02 0.42 -0.88 16 2 C -0.15 -1.13 9.52 -36.02 -0.34 -1.47 16 3 C -0.09 -0.86 6.03 -27.88 -0.17 -1.03 16 4 C 0.06 0.62 5.73 37.16 0.21 0.84 16 5 O -0.36 -4.98 9.54 -54.97 -0.52 -5.50 16 6 C 0.08 0.99 2.39 -27.89 -0.07 0.92 16 7 H 0.08 0.75 7.63 -51.93 -0.40 0.36 16 8 C -0.17 -1.79 9.34 37.16 0.35 -1.45 16 9 C 0.53 9.00 7.23 -10.99 -0.08 8.92 16 10 O -0.51 -11.43 16.83 -14.18 -0.24 -11.67 16 11 N -0.62 -9.24 3.31 -169.43 -0.56 -9.80 16 12 C 0.10 1.06 6.03 -2.45 -0.01 1.04 16 13 C -0.10 -1.13 3.58 -88.30 -0.32 -1.45 16 14 H 0.09 1.00 7.88 -51.93 -0.41 0.59 16 15 C -0.11 -1.08 6.08 -25.15 -0.15 -1.23 16 16 C -0.13 -1.36 6.86 -24.28 -0.17 -1.52 16 17 C -0.10 -1.52 5.19 -24.64 -0.13 -1.65 16 18 C -0.07 -1.15 0.62 -152.19 -0.09 -1.24 16 19 C 0.17 3.49 5.14 -4.04 -0.02 3.47 16 20 N -0.73 -18.53 4.93 -59.91 -0.30 -18.82 16 21 C -0.24 -6.81 9.99 -15.05 -0.15 -6.96 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 25 Si 0.91 23.10 29.55 -169.99 -5.02 18.07 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 C 0.12 2.00 5.79 -2.46 -0.01 1.99 16 30 H 0.10 0.68 7.84 -52.48 -0.41 0.27 16 31 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.11 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.08 0.79 7.79 -51.93 -0.40 0.38 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.40 7.78 -51.93 -0.40 -0.01 16 36 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.68 6.04 -51.93 -0.31 0.36 16 39 H 0.07 0.56 7.78 -51.93 -0.40 0.16 16 40 H 0.08 0.61 5.46 -51.93 -0.28 0.33 16 41 H 0.07 0.66 7.61 -51.93 -0.40 0.26 16 42 H 0.06 0.48 7.74 -51.93 -0.40 0.08 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.08 1.24 7.96 -51.93 -0.41 0.83 16 47 H 0.07 1.09 7.79 -51.93 -0.40 0.69 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.38 10.23 6.91 -40.82 -0.28 9.95 16 51 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 52 H 0.07 1.04 7.67 -51.93 -0.40 0.65 16 53 H 0.10 2.13 7.04 -51.93 -0.37 1.76 16 LS Contribution 416.13 15.07 6.27 6.27 Total: -1.00 -35.06 416.13 -9.94 -45.00 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -9.46 Total: 6.67 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.84 Total: -2.17 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.13 Total: -56.67 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.76 Total: -17.17 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.06 -9.94 -45.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112280345.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.542 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds