Wall clock time and date at job start Tue Mar 31 2020 20:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50709 * 119.99972 * 2 1 4 4 C 1.52997 * 109.47364 * 124.99682 * 3 2 1 5 5 O 1.42895 * 109.47128 * 180.02562 * 4 3 2 6 6 C 1.42908 * 113.99643 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47446 * 329.99756 * 6 5 4 8 8 C 1.52999 * 109.46991 * 90.00081 * 6 5 4 9 9 C 1.50697 * 109.46724 * 209.99933 * 6 5 4 10 10 O 1.21282 * 120.00339 * 350.72467 * 9 6 5 11 11 N 1.34775 * 120.00326 * 170.72663 * 9 6 5 12 12 C 1.48125 * 127.83648 * 354.86311 * 11 9 6 13 13 C 1.54334 * 104.69279 * 140.24240 * 12 11 9 14 14 H 1.09003 * 111.85211 * 262.43760 * 13 12 11 15 15 C 1.54156 * 108.86184 * 137.43914 * 13 12 11 16 16 C 1.54849 * 104.32948 * 271.23018 * 15 13 12 17 17 C 1.55776 * 102.31019 * 321.13229 * 16 15 13 18 18 C 1.54163 * 103.87901 * 39.34866 * 17 16 15 19 19 C 1.53005 * 111.82018 * 212.52863 * 18 17 16 20 20 N 1.46497 * 109.47016 * 299.26050 * 19 18 17 21 21 C 1.36944 * 119.99515 * 179.97438 * 20 19 18 22 22 H 1.07988 * 120.00205 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99297 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00303 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99289 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47332 * 60.00082 * 25 23 21 27 27 H 1.48497 * 109.46521 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47158 * 299.99421 * 25 23 21 29 29 C 1.48114 * 127.85205 * 174.83914 * 11 9 6 30 30 H 1.08006 * 120.00233 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00132 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.00271 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46479 * 4.99768 * 3 2 1 34 34 H 1.08997 * 109.46670 * 245.00080 * 3 2 1 35 35 H 1.09007 * 109.46834 * 59.99773 * 4 3 2 36 36 H 1.09005 * 109.47000 * 300.00138 * 4 3 2 37 37 H 1.09002 * 109.47216 * 65.28751 * 8 6 5 38 38 H 1.09005 * 109.47164 * 185.28568 * 8 6 5 39 39 H 1.08994 * 109.47253 * 305.28733 * 8 6 5 40 40 H 1.08997 * 110.39257 * 21.43838 * 12 11 9 41 41 H 1.08996 * 110.39108 * 259.03982 * 12 11 9 42 42 H 1.09002 * 110.46442 * 29.93562 * 15 13 12 43 43 H 1.09002 * 110.46323 * 152.51903 * 15 13 12 44 44 H 1.08996 * 110.76058 * 80.12083 * 16 15 13 45 45 H 1.08994 * 110.75909 * 203.31905 * 16 15 13 46 46 H 1.08999 * 111.74406 * 280.25308 * 17 16 15 47 47 H 1.08996 * 109.59559 * 157.39677 * 17 16 15 48 48 H 1.09001 * 109.46926 * 59.26300 * 19 18 17 49 49 H 1.08999 * 109.46912 * 179.25556 * 19 18 17 50 50 H 0.96997 * 120.00174 * 0.02562 * 20 19 18 51 51 H 0.97006 * 119.99640 * 180.02562 * 24 23 21 52 52 H 1.08996 * 110.39322 * 100.95814 * 29 11 9 53 53 H 1.09001 * 110.38930 * 338.57179 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3333 1.1816 5 8 3.7490 2.5710 1.1819 6 6 4.6884 2.6998 2.2511 7 1 4.3365 2.1346 3.1141 8 6 6.0469 2.1557 1.8046 9 6 4.8276 4.1530 2.6251 10 8 4.3202 5.0089 1.9317 11 7 5.5159 4.5015 3.7301 12 6 6.1115 3.6070 4.7495 13 6 7.4664 4.2583 5.0984 14 1 8.2900 3.7995 4.5513 15 6 7.6677 4.2025 6.6257 16 6 7.0135 5.5059 7.1464 17 6 7.4196 6.5404 6.0548 18 6 7.2927 5.7542 4.7348 19 6 8.3203 6.2133 3.6984 20 7 8.1079 7.6306 3.3947 21 6 8.9147 8.2649 2.4880 22 1 9.7072 7.7202 1.9965 23 6 8.7138 9.6080 2.2006 24 7 7.7483 10.2720 2.8000 25 14 9.8139 10.4731 0.9632 26 1 9.6973 9.8025 -0.3566 27 1 9.3958 11.8923 0.8366 28 1 11.2235 10.4123 1.4266 29 6 5.8491 5.8658 4.2008 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1316 0.0895 34 1 2.6212 1.4026 -0.9314 35 1 3.7399 0.5067 1.0921 36 1 2.4771 1.2358 2.1130 37 1 6.4423 2.7791 1.0026 38 1 6.7378 2.1670 2.6477 39 1 5.9287 1.1335 1.4454 40 1 6.2644 2.6098 4.3369 41 1 5.4742 3.5600 5.6325 42 1 7.1655 3.3305 7.0447 43 1 8.7299 4.1855 6.8698 44 1 5.9310 5.3959 7.2105 45 1 7.4297 5.7874 8.1136 46 1 8.4422 6.8919 6.1922 47 1 6.7226 7.3782 6.0679 48 1 9.3253 6.0736 4.0967 49 1 8.2055 5.6253 2.7878 50 1 7.3964 8.1200 3.8364 51 1 7.6077 11.2105 2.5988 52 1 5.1712 6.1684 4.9988 53 1 5.8037 6.5745 3.3738 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112280345.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:14 Heat of formation + Delta-G solvation = -74.815937 kcal Electronic energy + Delta-G solvation = -30334.713675 eV Core-core repulsion = 26398.963205 eV Total energy + Delta-G solvation = -3935.750470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.83571 -40.26788 -38.72138 -36.51212 -36.01179 -35.63260 -33.54566 -32.70974 -31.06449 -30.32628 -29.89429 -27.53342 -26.54966 -25.78503 -24.76185 -23.83787 -23.40370 -21.12268 -20.91344 -20.35618 -19.85819 -19.09397 -18.28536 -17.62569 -17.23273 -16.94993 -16.72095 -16.46341 -16.11811 -15.64126 -15.54229 -15.35268 -15.06790 -14.82458 -14.65585 -14.51920 -14.38705 -13.89489 -13.70680 -13.52603 -13.44640 -13.17165 -13.10207 -12.87482 -12.85531 -12.71466 -12.53624 -12.25381 -12.13603 -12.05889 -11.97740 -11.73489 -11.69275 -11.65897 -11.51594 -11.46861 -11.34528 -10.97710 -10.93231 -10.51286 -10.27305 -9.76738 -9.01665 -7.97747 -5.25958 1.32162 1.41397 1.45932 1.49879 1.51600 1.68762 2.52551 2.79614 3.30009 3.35035 3.46080 3.64011 3.70416 3.82610 3.96110 4.00093 4.14055 4.17106 4.20944 4.22821 4.24794 4.25605 4.42776 4.43474 4.46218 4.47263 4.51864 4.60992 4.72542 4.75210 4.76474 4.78387 4.88833 4.91097 4.97162 5.01855 5.05911 5.09546 5.12695 5.19575 5.23068 5.31575 5.32573 5.39503 5.43250 5.52982 5.56666 5.71293 5.85785 6.11700 6.24300 6.55329 7.10050 7.30455 8.07408 8.30294 9.25725 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010563 B = 0.002949 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.136097 B = 9491.378447 C =11360.210494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C -0.096 4.096 4 C 0.061 3.939 5 O -0.396 6.396 6 C 0.086 3.914 7 H 0.123 0.877 8 C -0.165 4.165 9 C 0.518 3.482 10 O -0.587 6.587 11 N -0.617 5.617 12 C 0.099 3.901 13 C -0.092 4.092 14 H 0.096 0.904 15 C -0.103 4.103 16 C -0.116 4.116 17 C -0.106 4.106 18 C -0.070 4.070 19 C 0.173 3.827 20 N -0.740 5.740 21 C -0.246 4.246 22 H 0.072 0.928 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.973 3.027 26 H -0.283 1.283 27 H -0.294 1.294 28 H -0.272 1.272 29 C 0.120 3.880 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.059 0.941 47 H 0.044 0.956 48 H 0.028 0.972 49 H -0.001 1.001 50 H 0.374 0.626 51 H 0.251 0.749 52 H 0.078 0.922 53 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.256 -28.312 8.226 30.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.174 4.174 3 C -0.134 4.134 4 C -0.015 4.015 5 O -0.315 6.315 6 C 0.025 3.975 7 H 0.140 0.860 8 C -0.223 4.223 9 C 0.307 3.693 10 O -0.466 6.466 11 N -0.350 5.350 12 C -0.022 4.022 13 C -0.111 4.111 14 H 0.114 0.886 15 C -0.140 4.140 16 C -0.154 4.154 17 C -0.145 4.145 18 C -0.071 4.071 19 C 0.047 3.953 20 N -0.382 5.382 21 C -0.378 4.378 22 H 0.090 0.910 23 C -0.269 4.269 24 N -0.619 5.619 25 Si 0.802 3.198 26 H -0.210 1.210 27 H -0.220 1.220 28 H -0.198 1.198 29 C -0.003 4.003 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.130 0.870 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.046 0.954 49 H 0.017 0.983 50 H 0.206 0.794 51 H 0.060 0.940 52 H 0.096 0.904 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.492 -27.759 7.492 29.713 hybrid contribution 0.177 1.759 -1.008 2.035 sum -7.315 -26.000 6.485 27.777 Atomic orbital electron populations 1.24085 0.96010 1.02650 0.99943 1.22824 0.96085 0.97578 1.00903 1.20654 0.97802 0.96511 0.98384 1.22749 0.94229 0.85530 0.98977 1.88036 1.55048 1.39601 1.48791 1.21892 0.92496 0.90661 0.92406 0.85994 1.22274 0.94350 1.02586 1.03049 1.20997 0.77251 0.92061 0.78944 1.90725 1.49094 1.54028 1.52797 1.48999 1.53808 1.09110 1.23123 1.23057 0.93445 0.94486 0.91213 1.22756 0.97698 0.92042 0.98640 0.88600 1.22337 1.01902 0.98275 0.91493 1.22658 1.00940 0.94369 0.97415 1.22428 1.00978 0.97715 0.93332 1.22158 0.92474 0.97266 0.95230 1.20694 0.96022 0.84290 0.94322 1.42511 1.38683 1.07011 1.50012 1.19566 1.09524 0.93018 1.15677 0.91021 1.25583 1.00738 0.97725 1.02854 1.69814 1.35137 1.09228 1.47761 0.85216 0.78648 0.77096 0.78845 1.20992 1.21973 1.19763 1.22306 0.95687 0.84327 0.97968 0.89098 0.86532 0.85203 0.92366 0.90724 0.90354 0.92011 0.94206 0.88568 0.88228 0.87000 0.88025 0.87958 0.90638 0.90659 0.90278 0.92212 0.93744 0.95442 0.98293 0.79401 0.94035 0.90434 0.94640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 14.32 67.78 0.97 -1.38 16 2 C -0.16 -2.01 9.52 25.65 0.24 -1.77 16 3 C -0.10 -1.72 6.03 29.85 0.18 -1.54 16 4 C 0.06 1.06 5.73 71.98 0.41 1.47 16 5 O -0.40 -10.90 9.54 -130.11 -1.24 -12.14 16 6 C 0.09 1.99 2.39 29.85 0.07 2.06 16 7 H 0.12 1.75 7.63 -2.39 -0.02 1.73 16 8 C -0.17 -3.02 9.34 71.98 0.67 -2.35 16 9 C 0.52 17.87 7.23 87.66 0.63 18.50 16 10 O -0.59 -28.29 16.83 15.84 0.27 -28.03 16 11 N -0.62 -18.06 3.31 -808.34 -2.68 -20.74 16 12 C 0.10 1.65 6.03 86.52 0.52 2.17 16 13 C -0.09 -1.80 3.58 -9.29 -0.03 -1.84 16 14 H 0.10 1.81 7.88 -2.39 -0.02 1.79 16 15 C -0.10 -1.43 6.08 31.62 0.19 -1.23 16 16 C -0.12 -2.13 6.86 32.18 0.22 -1.91 16 17 C -0.11 -3.11 5.19 31.95 0.17 -2.94 16 18 C -0.07 -2.18 0.62 -50.68 -0.03 -2.21 16 19 C 0.17 7.26 5.14 86.38 0.44 7.70 16 20 N -0.74 -39.84 4.93 -343.45 -1.69 -41.53 16 21 C -0.25 -14.61 9.99 84.03 0.84 -13.77 16 22 H 0.07 4.10 7.83 -2.92 -0.02 4.08 16 23 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 24 N -0.97 -62.58 13.06 21.65 0.28 -62.30 16 25 Si 0.97 48.84 29.55 68.60 2.03 50.87 16 26 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 28 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 29 C 0.12 4.28 5.79 86.52 0.50 4.78 16 30 H 0.09 1.23 7.84 -2.91 -0.02 1.21 16 31 H 0.12 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.13 1.16 8.06 -2.91 -0.02 1.13 16 33 H 0.06 1.23 7.79 -2.39 -0.02 1.22 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 0.92 7.78 -2.38 -0.02 0.91 16 36 H 0.06 0.91 8.09 -2.38 -0.02 0.89 16 37 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 1.31 6.04 -2.38 -0.01 1.30 16 39 H 0.10 1.22 7.78 -2.39 -0.02 1.20 16 40 H 0.11 1.12 5.46 -2.39 -0.01 1.11 16 41 H 0.10 1.23 7.61 -2.39 -0.02 1.21 16 42 H 0.10 0.78 7.74 -2.39 -0.02 0.76 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.06 1.94 7.96 -2.39 -0.02 1.92 16 47 H 0.04 1.48 7.79 -2.39 -0.02 1.46 16 48 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 50 H 0.37 21.44 6.91 -92.71 -0.64 20.80 16 51 H 0.25 15.71 8.31 -92.70 -0.77 14.94 16 52 H 0.08 2.53 7.67 -2.39 -0.02 2.51 16 53 H 0.03 1.70 7.04 -2.39 -0.02 1.68 16 Total: -1.00 -85.66 416.13 3.67 -81.99 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.23 Total: 30.34 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 6.47 Total: 1.54 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -4.09 Total: -124.57 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.97 Total: -40.16 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal Total: -85.66 3.67 -81.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112280345.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.172 kcal (2) G-P(sol) polarization free energy of solvation -85.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds