Wall clock time and date at job start Tue Mar 31 2020 20:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47054 * 2 1 4 4 O 1.42896 * 109.47579 * 239.99382 * 2 1 3 5 5 C 1.42894 * 114.00264 * 149.17483 * 4 2 1 6 6 C 1.54237 * 108.89858 * 273.64163 * 5 4 2 7 7 C 1.50555 * 108.48515 * 159.17629 * 6 5 4 8 8 C 1.54073 * 112.41479 * 94.26455 * 7 6 5 9 9 C 1.54062 * 112.81680 * 318.28210 * 8 7 6 10 10 C 1.50473 * 112.49762 * 318.28461 * 9 8 7 11 11 C 1.45544 * 108.89521 * 150.84527 * 5 4 2 12 12 C 1.50700 * 109.46800 * 119.99023 * 2 1 3 13 13 O 1.21285 * 119.99728 * 120.00205 * 12 2 1 14 14 N 1.34778 * 120.00374 * 300.00181 * 12 2 1 15 15 C 1.46501 * 119.99726 * 179.97438 * 14 12 2 16 16 H 1.08997 * 115.51843 * 9.42191 * 15 14 12 17 17 C 1.53000 * 117.44205 * 223.99910 * 15 14 12 18 18 H 1.09004 * 119.53949 * 4.12741 * 17 15 14 19 19 C 1.54385 * 118.12017 * 160.81389 * 17 15 14 20 20 N 1.48144 * 104.61744 * 87.19728 * 19 17 15 21 21 C 1.36937 * 127.83960 * 140.41443 * 20 19 17 22 22 H 1.08002 * 119.99982 * 195.70436 * 21 20 19 23 23 C 1.38806 * 120.00207 * 15.69753 * 21 20 19 24 24 N 1.31627 * 120.00186 * 9.63506 * 23 21 20 25 25 Si 1.86808 * 120.00168 * 189.63728 * 23 21 20 26 26 H 1.48499 * 109.46778 * 89.99932 * 25 23 21 27 27 H 1.48502 * 109.46970 * 209.99721 * 25 23 21 28 28 H 1.48498 * 109.46904 * 330.00208 * 25 23 21 29 29 C 1.48013 * 104.31713 * 320.45911 * 20 19 17 30 30 C 1.53000 * 117.43560 * 154.83391 * 15 14 12 31 31 H 1.09000 * 119.54741 * 355.88197 * 30 15 14 32 32 H 1.09000 * 109.46671 * 185.12508 * 1 2 3 33 33 H 1.08993 * 109.47499 * 305.12985 * 1 2 3 34 34 H 1.09000 * 109.46774 * 65.13140 * 1 2 3 35 35 H 1.09007 * 108.87264 * 32.24969 * 5 4 2 36 36 H 1.08996 * 109.62900 * 278.97535 * 6 5 4 37 37 H 1.08993 * 109.62805 * 39.55471 * 6 5 4 38 38 H 1.09002 * 108.92079 * 333.51452 * 7 6 5 39 39 H 1.09001 * 108.83967 * 214.96516 * 7 6 5 40 40 H 1.08999 * 108.81226 * 197.42170 * 8 7 6 41 41 H 1.09001 * 108.81142 * 79.14038 * 8 7 6 42 42 H 1.08999 * 108.88322 * 197.50377 * 9 8 7 43 43 H 1.09003 * 108.80029 * 79.00620 * 9 8 7 44 44 H 1.09006 * 109.62915 * 334.44150 * 10 9 8 45 45 H 1.09003 * 109.79297 * 213.95961 * 10 9 8 46 46 H 1.09001 * 108.89985 * 303.44735 * 11 5 4 47 47 H 1.09004 * 108.89090 * 61.94159 * 11 5 4 48 48 H 0.96997 * 119.99782 * 0.02562 * 14 12 2 49 49 H 1.09009 * 110.40570 * 205.97692 * 19 17 15 50 50 H 1.09004 * 110.41140 * 328.40681 * 19 17 15 51 51 H 0.96999 * 120.00108 * 180.02562 * 24 23 21 52 52 H 1.09000 * 110.41404 * 280.73955 * 29 20 19 53 53 H 1.09001 * 110.36756 * 158.33024 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 3.2571 -0.1816 -1.6521 6 6 2.9931 1.0110 -2.5938 7 6 4.2523 1.8305 -2.6908 8 6 5.1181 1.4360 -3.9026 9 6 5.1950 -0.0885 -4.1110 10 6 5.3593 -0.8389 -2.8171 11 6 3.9639 -1.2659 -2.3177 12 6 2.0323 -0.7102 1.2306 13 8 2.7296 -1.6963 1.1195 14 7 1.7066 -0.2496 2.4547 15 6 2.1945 -0.9405 3.6509 16 1 2.9397 -1.7161 3.4741 17 6 1.1987 -1.1659 4.7904 18 1 0.1565 -0.8748 4.6588 19 6 1.5259 -2.2511 5.8386 20 7 2.3522 -1.5548 6.8521 21 6 2.3123 -1.7011 8.2131 22 1 2.7798 -0.9641 8.8493 23 6 1.6711 -2.7965 8.7749 24 7 1.2682 -3.7878 8.0084 25 14 1.3796 -2.8637 10.6189 26 1 0.0666 -2.2463 10.9352 27 1 1.3826 -4.2788 11.0692 28 1 2.4578 -2.1194 11.3178 29 6 3.2299 -0.6644 6.0598 30 6 2.3218 -0.1202 4.9361 31 1 2.1164 0.9501 4.9132 32 1 -0.3633 -1.0236 0.0918 33 1 -0.3634 0.5913 0.8404 34 1 -0.3633 0.4322 -0.9324 35 1 3.8532 0.1615 -0.8064 36 1 2.7167 0.6431 -3.5819 37 1 2.1880 1.6249 -2.1902 38 1 4.8355 1.6914 -1.7805 39 1 3.9816 2.8827 -2.7783 40 1 6.1267 1.8219 -3.7545 41 1 4.6974 1.8925 -4.7986 42 1 6.0419 -0.3136 -4.7592 43 1 4.2795 -0.4230 -4.5988 44 1 5.8314 -0.1931 -2.0766 45 1 5.9766 -1.7226 -2.9788 46 1 4.0775 -2.0947 -1.6189 47 1 3.3722 -1.6028 -3.1689 48 1 1.1487 0.5388 2.5435 49 1 0.6097 -2.6310 6.2911 50 1 2.0902 -3.0637 5.3811 51 1 0.8198 -4.5531 8.4010 52 1 4.0614 -1.2282 5.6370 53 1 3.5995 0.1529 6.6791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114813356.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:20 Heat of formation + Delta-G solvation = -59.727703 kcal Electronic energy + Delta-G solvation = -29698.914948 eV Core-core repulsion = 25763.818753 eV Total energy + Delta-G solvation = -3935.096195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.48721 -40.56696 -39.65189 -37.61434 -36.10690 -34.56844 -33.40575 -32.97034 -32.09005 -31.00448 -28.94866 -27.68285 -25.82894 -25.54332 -25.05582 -23.39773 -21.99885 -21.68929 -21.40709 -20.88157 -20.17071 -18.89992 -18.40852 -18.35914 -17.52926 -16.86770 -16.63270 -16.18702 -15.98485 -15.58765 -15.51486 -15.18821 -14.84832 -14.74964 -14.66990 -14.36058 -13.95052 -13.78898 -13.62391 -13.39935 -13.30251 -13.20091 -13.08146 -13.06860 -12.90799 -12.72042 -12.54991 -12.39538 -12.16164 -12.04798 -11.93608 -11.89079 -11.68145 -11.52903 -11.40104 -11.27979 -11.21595 -11.10254 -10.85435 -10.76062 -10.26667 -9.73478 -8.95239 -7.93453 -5.31074 1.45747 1.45890 1.48350 1.57314 1.84728 2.47023 2.61018 2.82291 3.26495 3.51420 3.61547 3.66521 3.81805 3.83459 3.90663 3.97354 3.99266 4.04367 4.11504 4.17491 4.24816 4.30893 4.35690 4.36625 4.43189 4.49315 4.55627 4.70601 4.76868 4.84924 4.86825 4.88897 4.96661 4.97142 5.00301 5.07477 5.21331 5.22803 5.25937 5.26196 5.32233 5.33240 5.35683 5.39431 5.43044 5.45122 5.51967 5.56691 5.61376 6.12556 6.14089 6.52861 6.97491 7.19837 7.65183 8.43519 9.20621 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025504 B = 0.001994 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.617366 B =14036.516342 C =14283.278152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.079 3.921 3 H 0.120 0.880 4 O -0.375 6.375 5 C 0.096 3.904 6 C -0.130 4.130 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.119 4.119 10 C -0.107 4.107 11 C -0.120 4.120 12 C 0.485 3.515 13 O -0.576 6.576 14 N -0.678 5.678 15 C 0.115 3.885 16 H 0.098 0.902 17 C -0.186 4.186 18 H 0.125 0.875 19 C 0.189 3.811 20 N -0.617 5.617 21 C -0.240 4.240 22 H 0.086 0.914 23 C -0.066 4.066 24 N -0.950 5.950 25 Si 0.984 3.016 26 H -0.283 1.283 27 H -0.296 1.296 28 H -0.265 1.265 29 C 0.147 3.853 30 C -0.156 4.156 31 H 0.145 0.855 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.041 0.959 47 H 0.069 0.931 48 H 0.419 0.581 49 H 0.056 0.944 50 H -0.010 1.010 51 H 0.250 0.750 52 H 0.016 0.984 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.719 16.873 -25.814 30.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 H 0.137 0.863 4 O -0.293 6.293 5 C 0.039 3.961 6 C -0.168 4.168 7 C -0.157 4.157 8 C -0.154 4.154 9 C -0.156 4.156 10 C -0.145 4.145 11 C -0.158 4.158 12 C 0.273 3.727 13 O -0.455 6.455 14 N -0.330 5.330 15 C 0.007 3.993 16 H 0.116 0.884 17 C -0.207 4.207 18 H 0.143 0.857 19 C 0.063 3.937 20 N -0.341 5.341 21 C -0.369 4.369 22 H 0.103 0.897 23 C -0.260 4.260 24 N -0.598 5.598 25 Si 0.812 3.188 26 H -0.209 1.209 27 H -0.223 1.223 28 H -0.190 1.190 29 C 0.022 3.978 30 C -0.176 4.176 31 H 0.162 0.838 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.088 0.912 48 H 0.257 0.743 49 H 0.075 0.925 50 H 0.008 0.992 51 H 0.059 0.941 52 H 0.034 0.966 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.071 15.884 -25.817 30.382 hybrid contribution -0.174 -0.595 1.457 1.584 sum 1.896 15.288 -24.359 28.822 Atomic orbital electron populations 1.21905 0.89246 1.03382 1.05517 1.22201 0.97732 0.96227 0.82069 0.86281 1.88049 1.38305 1.61607 1.41322 1.21199 0.84155 0.94880 0.95868 1.21849 0.98759 0.95821 1.00340 1.21311 0.95603 1.00044 0.98740 1.21924 0.99999 0.95228 0.98246 1.21357 1.02308 0.95255 0.96728 1.21210 0.94722 1.00430 0.98134 1.20513 0.96915 0.97785 1.00572 1.22299 0.79626 0.84810 0.85979 1.90709 1.39505 1.28072 1.87169 1.45209 1.52851 1.31476 1.03464 1.21334 0.99147 0.98072 0.80709 0.88410 1.24380 0.96452 1.00775 0.99097 0.85706 1.20744 0.95073 0.90786 0.87078 1.45466 1.39770 1.47105 1.01726 1.19419 1.31839 1.04607 0.81027 0.89659 1.25830 1.02209 0.95122 1.02791 1.70127 1.45243 1.08690 1.35700 0.85001 0.78345 0.76419 0.79077 1.20930 1.22313 1.18960 1.21251 0.91715 0.93415 0.91452 1.24219 1.00375 0.98077 0.94953 0.83767 0.93166 0.88021 0.88699 0.93795 0.90617 0.90292 0.92778 0.90527 0.91847 0.91274 0.91346 0.91968 0.91836 0.91255 0.94030 0.91214 0.74254 0.92528 0.99203 0.94127 0.96625 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.42 71.98 0.68 -1.27 16 2 C 0.08 1.48 2.76 29.85 0.08 1.57 16 3 H 0.12 1.45 7.41 -2.39 -0.02 1.43 16 4 O -0.37 -8.82 9.08 -129.94 -1.18 -10.00 16 5 C 0.10 1.89 1.91 28.74 0.05 1.95 16 6 C -0.13 -1.70 5.15 30.22 0.16 -1.55 16 7 C -0.12 -1.32 5.32 30.17 0.16 -1.16 16 8 C -0.12 -1.19 5.85 31.32 0.18 -1.00 16 9 C -0.12 -1.43 5.32 30.14 0.16 -1.27 16 10 C -0.11 -1.72 5.61 30.20 0.17 -1.55 16 11 C -0.12 -2.50 4.81 28.74 0.14 -2.36 16 12 C 0.49 13.46 7.18 87.66 0.63 14.09 16 13 O -0.58 -22.49 16.06 15.99 0.26 -22.24 16 14 N -0.68 -16.47 5.47 -442.53 -2.42 -18.89 16 15 C 0.11 3.82 5.98 44.99 0.27 4.09 16 16 H 0.10 4.00 7.40 -2.39 -0.02 3.98 16 17 C -0.19 -6.97 7.05 -9.94 -0.07 -7.04 16 18 H 0.13 4.13 8.14 -2.38 -0.02 4.11 16 19 C 0.19 9.67 5.69 86.53 0.49 10.16 16 20 N -0.62 -32.40 3.38 -688.49 -2.32 -34.72 16 21 C -0.24 -13.56 10.35 84.03 0.87 -12.69 16 22 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 23 C -0.07 -3.79 5.39 84.86 0.46 -3.34 16 24 N -0.95 -58.44 10.90 21.65 0.24 -58.20 16 25 Si 0.98 45.75 29.56 68.60 2.03 47.77 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 29 C 0.15 6.14 7.03 86.56 0.61 6.75 16 30 C -0.16 -5.11 7.05 -9.93 -0.07 -5.18 16 31 H 0.14 3.64 8.14 -2.39 -0.02 3.62 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 0.84 7.71 -2.39 -0.02 0.82 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.04 0.96 7.12 -2.38 -0.02 0.94 16 36 H 0.08 0.99 6.96 -2.39 -0.02 0.97 16 37 H 0.08 0.85 7.62 -2.39 -0.02 0.83 16 38 H 0.05 0.69 6.63 -2.39 -0.02 0.68 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.77 6.62 -2.39 -0.02 0.75 16 44 H 0.06 1.04 6.98 -2.38 -0.02 1.03 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 47 H 0.07 1.39 7.47 -2.38 -0.02 1.37 16 48 H 0.42 6.58 8.34 -92.71 -0.77 5.81 16 49 H 0.06 3.23 6.54 -2.38 -0.02 3.22 16 50 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 51 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 52 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 53 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -76.62 406.46 1.68 -74.94 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.11 Total: 21.15 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 4.97 Total: 0.19 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -4.51 Total: -111.82 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.92 Total: -32.24 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -76.62 1.68 -74.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114813356.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.214 kcal (2) G-P(sol) polarization free energy of solvation -76.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds