Wall clock time and date at job start Tue Mar 31 2020 19:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46905 * 2 1 4 4 C 1.53003 * 109.47353 * 119.99712 * 2 1 3 5 5 C 1.50700 * 109.47203 * 295.00092 * 4 2 1 6 6 O 1.21273 * 119.99715 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99464 * 179.97438 * 5 4 2 8 8 C 1.46505 * 119.99544 * 180.02562 * 7 5 4 9 9 C 1.53946 * 113.58087 * 154.99969 * 8 7 5 10 10 C 1.52905 * 86.78200 * 89.86899 * 9 8 7 11 11 C 1.52913 * 121.13639 * 150.61618 * 10 9 8 12 12 C 1.53945 * 86.77956 * 100.82368 * 11 10 9 13 13 N 1.46506 * 113.57811 * 139.34092 * 12 11 10 14 14 C 1.36931 * 119.99939 * 154.99803 * 13 12 11 15 15 H 1.08000 * 120.00644 * 359.97438 * 14 13 12 16 16 C 1.38815 * 119.99715 * 179.97438 * 14 13 12 17 17 N 1.31611 * 120.00107 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99746 * 179.72150 * 16 14 13 19 19 H 1.48497 * 109.47323 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46790 * 120.00304 * 18 16 14 21 21 H 1.48501 * 109.47364 * 240.00332 * 18 16 14 22 22 C 1.52906 * 121.13836 * 259.17847 * 10 9 8 23 23 C 1.52908 * 88.04323 * 24.89970 * 10 9 8 24 24 C 1.52995 * 109.47242 * 239.99928 * 2 1 3 25 25 H 1.08997 * 109.82807 * 185.56423 * 24 2 1 26 26 C 1.54387 * 109.82909 * 64.58275 * 24 2 1 27 27 C 1.55310 * 102.25188 * 219.12816 * 26 24 2 28 28 C 1.54943 * 100.94020 * 34.13773 * 27 26 24 29 29 O 1.43246 * 109.82924 * 306.45239 * 24 2 1 30 30 H 1.09006 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46739 * 299.99953 * 1 2 3 32 32 H 1.08994 * 109.47166 * 59.99882 * 1 2 3 33 33 H 1.09002 * 109.47241 * 174.99620 * 4 2 1 34 34 H 1.09001 * 109.47047 * 55.00113 * 4 2 1 35 35 H 0.96994 * 120.00569 * 359.97438 * 7 5 4 36 36 H 1.09005 * 112.87852 * 23.85657 * 8 7 5 37 37 H 1.08999 * 113.66236 * 335.39637 * 9 8 7 38 38 H 1.08997 * 113.66296 * 204.34609 * 9 8 7 39 39 H 1.09006 * 113.65906 * 346.34780 * 11 10 9 40 40 H 1.09001 * 113.74510 * 215.31106 * 11 10 9 41 41 H 1.09004 * 113.57989 * 270.05207 * 12 11 10 42 42 H 0.97000 * 119.99307 * 334.99597 * 13 12 11 43 43 H 0.97000 * 120.00330 * 179.97438 * 17 16 14 44 44 H 1.09003 * 113.66036 * 144.70622 * 22 10 9 45 45 H 1.08997 * 113.66322 * 13.65622 * 22 10 9 46 46 H 1.08999 * 113.66416 * 89.57307 * 23 10 9 47 47 H 1.08999 * 113.66154 * 220.62741 * 23 10 9 48 48 H 1.08990 * 110.84903 * 337.32253 * 26 24 2 49 49 H 1.09006 * 110.84551 * 100.94542 * 26 24 2 50 50 H 1.08987 * 111.12840 * 276.21475 * 27 26 24 51 51 H 1.09007 * 111.15551 * 152.06773 * 27 26 24 52 52 H 1.08997 * 110.30783 * 204.63239 * 28 27 26 53 53 H 1.09008 * 110.31216 * 82.46897 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0571 2.4766 6 8 1.0118 1.0874 2.3632 7 7 1.9846 -0.3919 3.7002 8 6 1.5966 0.3645 4.8934 9 6 1.4955 -0.4989 6.1639 10 6 2.9726 -0.1786 6.3951 11 6 3.5576 -0.1209 7.8068 12 6 4.1146 -1.5310 7.5399 13 7 5.4729 -1.7309 8.0512 14 6 5.9094 -2.9914 8.3605 15 1 5.2523 -3.8382 8.2280 16 6 7.1966 -3.1809 8.8444 17 7 7.9973 -2.1490 9.0064 18 14 7.7894 -4.8996 9.2738 19 1 6.7041 -5.8781 9.0092 20 1 8.9729 -5.2370 8.4427 21 1 8.1626 -4.9501 10.7103 22 6 4.0655 -1.1873 6.0401 23 6 2.7720 1.0930 5.5699 24 6 2.0400 -0.7212 -1.2492 25 1 3.1254 -0.8115 -1.2067 26 6 1.6269 0.0640 -2.5126 27 6 1.2539 -1.0745 -3.5010 28 6 0.6556 -2.1229 -2.5296 29 8 1.4471 -2.0224 -1.3351 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 3.1264 -0.7995 1.2056 34 1 1.6055 -1.7198 1.2952 35 1 2.4879 -1.2161 3.7908 36 1 0.7268 1.0002 4.7278 37 1 1.3027 -1.5526 5.9626 38 1 0.8335 -0.0834 6.9237 39 1 2.8025 -0.0901 8.5923 40 1 4.3298 0.6383 7.9312 41 1 3.4325 -2.3310 7.8278 42 1 6.0630 -0.9704 8.1705 43 1 8.8966 -2.2813 9.3449 44 1 4.9804 -0.7277 5.6663 45 1 3.7162 -2.0086 5.4143 46 1 2.4689 1.9560 6.1627 47 1 3.5989 1.3109 4.8941 48 1 0.7650 0.6995 -2.3098 49 1 2.4620 0.6512 -2.8947 50 1 2.1391 -1.4644 -4.0032 51 1 0.5103 -0.7397 -4.2243 52 1 0.7379 -3.1231 -2.9550 53 1 -0.3866 -1.8874 -2.3138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122113278.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:32 Heat of formation + Delta-G solvation = -61.711316 kcal Electronic energy + Delta-G solvation = -29321.009043 eV Core-core repulsion = 25385.826832 eV Total energy + Delta-G solvation = -3935.182211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.82379 -40.91044 -39.96559 -37.24902 -35.44615 -35.08083 -33.57329 -32.95556 -31.48757 -29.57086 -28.63836 -26.75586 -26.56398 -26.13361 -24.66179 -23.53839 -22.61002 -21.74772 -21.06518 -20.55226 -19.38852 -18.71517 -18.25199 -17.68165 -16.96362 -16.88254 -16.71278 -16.47830 -16.06489 -15.74266 -15.47434 -15.25179 -15.19923 -14.81466 -14.76707 -14.25340 -13.90753 -13.77109 -13.59904 -13.46105 -13.18710 -13.00413 -12.92591 -12.85419 -12.72284 -12.65436 -12.42891 -12.27377 -12.20787 -12.11265 -11.98174 -11.86005 -11.81527 -11.64027 -11.44833 -11.18010 -11.13627 -10.85422 -10.71860 -10.60605 -10.32706 -9.93252 -8.96208 -7.93831 -5.21734 1.47840 1.48217 1.58326 1.67709 2.22969 2.57082 2.96377 3.37933 3.53450 3.56358 3.60749 3.69309 3.73438 3.85668 3.89735 3.99306 4.02801 4.06751 4.20995 4.31850 4.32751 4.36625 4.40130 4.55127 4.62667 4.66008 4.70445 4.78696 4.84649 4.85495 4.86728 4.90578 4.92541 4.95792 4.97089 4.99176 5.02923 5.08500 5.10297 5.13556 5.18219 5.23314 5.29684 5.32145 5.45369 5.50709 5.57369 5.68942 5.78775 6.16987 6.28772 6.60378 7.30302 7.34195 8.12742 8.34873 9.29848 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.002099 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.148866 B =13336.345516 C =14792.328970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 H 0.077 0.923 4 C -0.130 4.130 5 C 0.514 3.486 6 O -0.574 6.574 7 N -0.706 5.706 8 C 0.126 3.874 9 C -0.109 4.109 10 C -0.090 4.090 11 C -0.132 4.132 12 C 0.148 3.852 13 N -0.729 5.729 14 C -0.239 4.239 15 H 0.078 0.922 16 C -0.081 4.081 17 N -0.972 5.972 18 Si 0.972 3.028 19 H -0.264 1.264 20 H -0.295 1.295 21 H -0.295 1.295 22 C -0.130 4.130 23 C -0.135 4.135 24 C 0.083 3.917 25 H 0.084 0.916 26 C -0.153 4.153 27 C -0.151 4.151 28 C 0.042 3.958 29 O -0.394 6.394 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.409 0.591 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.056 0.944 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.081 0.919 51 H 0.095 0.905 52 H 0.090 0.910 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.185 4.237 -23.851 30.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.096 0.904 4 C -0.170 4.170 5 C 0.303 3.697 6 O -0.454 6.454 7 N -0.357 5.357 8 C 0.020 3.980 9 C -0.147 4.147 10 C -0.091 4.091 11 C -0.171 4.171 12 C 0.038 3.962 13 N -0.367 5.367 14 C -0.371 4.371 15 H 0.096 0.904 16 C -0.272 4.272 17 N -0.623 5.623 18 Si 0.801 3.199 19 H -0.188 1.188 20 H -0.222 1.222 21 H -0.223 1.223 22 C -0.171 4.171 23 C -0.173 4.173 24 C 0.025 3.975 25 H 0.102 0.898 26 C -0.191 4.191 27 C -0.189 4.189 28 C -0.034 4.034 29 O -0.314 6.314 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.245 0.755 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.075 0.925 48 H 0.100 0.900 49 H 0.110 0.890 50 H 0.100 0.900 51 H 0.114 0.886 52 H 0.108 0.892 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.619 4.582 -23.733 30.511 hybrid contribution 1.346 -0.613 0.581 1.589 sum -17.273 3.969 -23.152 29.157 Atomic orbital electron populations 1.21824 0.94787 1.01425 1.01952 1.21208 0.96970 0.98935 0.92822 0.90443 1.21716 1.03714 1.00441 0.91140 1.21145 0.78031 0.85243 0.85328 1.90630 1.41588 1.26141 1.87065 1.45794 1.57180 1.27643 1.05097 1.21766 0.97514 0.94337 0.84395 1.23044 0.94392 1.00841 0.96413 1.22191 0.95055 0.96369 0.95454 1.23162 0.99639 0.97573 0.96743 1.21932 0.85698 0.95633 0.92898 1.42642 1.11608 1.05643 1.76777 1.19753 0.96497 0.86979 1.33824 0.90394 1.25581 0.97369 1.00891 1.03402 1.69824 1.07914 1.30542 1.53999 0.85090 0.77975 0.79998 0.76822 1.18837 1.22205 1.22287 1.23327 0.96786 0.97618 0.99337 1.23248 0.98423 0.97253 0.98419 1.22848 0.97451 0.82786 0.94404 0.89809 1.23248 1.03124 0.98586 0.94126 1.23250 1.02236 0.95237 0.98132 1.23526 0.94918 1.00474 0.84490 1.88401 1.66549 1.32498 1.43925 0.92930 0.92924 0.92201 0.87631 0.87719 0.75459 0.88829 0.90117 0.87028 0.90898 0.91643 0.90695 0.79672 0.94150 0.92199 0.91462 0.88371 0.92497 0.89987 0.89036 0.90017 0.88610 0.89153 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.47 71.98 0.61 -2.03 16 2 C -0.08 -1.38 1.86 -10.79 -0.02 -1.40 16 3 H 0.08 1.47 7.95 -2.39 -0.02 1.45 16 4 C -0.13 -2.29 5.04 29.85 0.15 -2.14 16 5 C 0.51 11.71 7.55 87.66 0.66 12.38 16 6 O -0.57 -16.71 13.57 -3.01 -0.04 -16.75 16 7 N -0.71 -14.81 5.26 -439.52 -2.31 -17.12 16 8 C 0.13 2.74 4.31 45.62 0.20 2.94 16 9 C -0.11 -2.21 7.59 30.88 0.23 -1.98 16 10 C -0.09 -2.30 1.02 -52.32 -0.05 -2.36 16 11 C -0.13 -4.15 7.59 30.88 0.23 -3.91 16 12 C 0.15 5.61 4.48 45.62 0.20 5.81 16 13 N -0.73 -36.59 5.40 -319.93 -1.73 -38.32 16 14 C -0.24 -13.15 9.97 84.04 0.84 -12.31 16 15 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 16 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 17 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 18 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 22 C -0.13 -4.11 7.18 30.88 0.22 -3.89 16 23 C -0.13 -3.21 7.64 30.88 0.24 -2.97 16 24 C 0.08 1.20 3.21 31.06 0.10 1.30 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 C -0.15 -1.64 6.36 31.86 0.20 -1.44 16 27 C -0.15 -1.33 7.16 32.05 0.23 -1.10 16 28 C 0.04 0.50 7.71 72.65 0.56 1.06 16 29 O -0.39 -6.73 9.82 -148.98 -1.46 -8.19 16 30 H 0.05 0.97 7.54 -2.38 -0.02 0.96 16 31 H 0.05 1.23 5.95 -2.38 -0.01 1.21 16 32 H 0.06 0.95 6.34 -2.39 -0.02 0.93 16 33 H 0.11 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.75 8.01 -2.39 -0.02 1.73 16 35 H 0.41 7.61 7.57 -92.71 -0.70 6.90 16 36 H 0.09 2.19 7.47 -2.38 -0.02 2.17 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.06 2.24 8.12 -2.39 -0.02 2.22 16 41 H 0.08 2.81 8.10 -2.38 -0.02 2.79 16 42 H 0.37 20.26 7.92 -92.71 -0.73 19.53 16 43 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.07 1.89 7.47 -2.39 -0.02 1.87 16 46 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.08 0.90 6.07 -2.39 -0.01 0.89 16 49 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 52 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -68.62 411.10 1.30 -67.31 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -0.54 Total: 40.73 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 5.07 Total: -16.21 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -3.76 Total: -114.99 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -1.50 Total: -24.94 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -68.62 1.30 -67.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122113278.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.604 kcal (2) G-P(sol) polarization free energy of solvation -68.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds