Wall clock time and date at job start Tue Mar 31 2020 19:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46996 * 2 1 4 4 C 1.53000 * 109.47014 * 119.99899 * 2 1 3 5 5 C 1.50697 * 109.46955 * 295.00193 * 4 2 1 6 6 O 1.21277 * 120.00458 * 359.97438 * 5 4 2 7 7 N 1.34785 * 120.00054 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00112 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47013 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47010 * 179.97438 * 9 8 7 11 11 C 1.29454 * 117.69260 * 94.98047 * 10 9 8 12 12 C 1.50319 * 123.65446 * 180.87841 * 11 10 9 13 13 N 1.47006 * 109.16647 * 349.02497 * 12 11 10 14 14 C 1.36935 * 121.37843 * 222.92253 * 13 12 11 15 15 H 1.07998 * 120.00124 * 155.98758 * 14 13 12 16 16 C 1.38805 * 119.99840 * 335.99439 * 14 13 12 17 17 N 1.31624 * 120.00303 * 344.51428 * 16 14 13 18 18 Si 1.86805 * 120.00020 * 164.51440 * 16 14 13 19 19 H 1.48504 * 109.47033 * 60.00052 * 18 16 14 20 20 H 1.48505 * 109.47048 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47110 * 300.00254 * 18 16 14 22 22 C 1.47343 * 117.24709 * 42.94367 * 13 12 11 23 23 C 1.49964 * 117.69718 * 275.00143 * 10 9 8 24 24 C 1.53000 * 109.47042 * 239.99770 * 2 1 3 25 25 H 1.08996 * 109.87315 * 299.29923 * 24 2 1 26 26 C 1.54106 * 109.87829 * 60.30697 * 24 2 1 27 27 C 1.54812 * 104.18522 * 121.45401 * 26 24 2 28 28 C 1.54995 * 102.09263 * 20.87830 * 27 26 24 29 29 O 1.43743 * 109.87832 * 178.29482 * 24 2 1 30 30 H 1.09001 * 109.46769 * 59.99955 * 1 2 3 31 31 H 1.09001 * 109.47336 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47397 * 300.00453 * 1 2 3 33 33 H 1.08995 * 109.47374 * 175.00186 * 4 2 1 34 34 H 1.09007 * 109.47139 * 54.99710 * 4 2 1 35 35 H 0.96997 * 119.99434 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.47343 * 59.99902 * 8 7 5 37 37 H 1.08999 * 109.47012 * 300.00151 * 8 7 5 38 38 H 1.09000 * 109.47112 * 59.99802 * 9 8 7 39 39 H 1.08999 * 109.47389 * 299.99962 * 9 8 7 40 40 H 1.08008 * 118.17578 * 0.87874 * 11 10 9 41 41 H 1.08995 * 109.52755 * 229.11553 * 12 11 10 42 42 H 1.09008 * 109.57534 * 108.95944 * 12 11 10 43 43 H 0.96998 * 119.99771 * 179.97438 * 17 16 14 44 44 H 1.09008 * 109.77881 * 178.62021 * 22 13 12 45 45 H 1.08999 * 109.82612 * 57.84066 * 22 13 12 46 46 H 1.08994 * 109.31474 * 40.69384 * 23 10 9 47 47 H 1.09003 * 109.31474 * 281.26899 * 23 10 9 48 48 H 1.08994 * 110.48699 * 240.12952 * 26 24 2 49 49 H 1.08992 * 110.48483 * 2.64633 * 26 24 2 50 50 H 1.08998 * 110.90790 * 139.08145 * 27 26 24 51 51 H 1.09007 * 110.90529 * 262.64946 * 27 26 24 52 52 H 1.09002 * 110.61612 * 81.48085 * 28 27 26 53 53 H 1.09006 * 110.61633 * 204.47593 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4765 6 8 1.0117 1.0874 2.3632 7 7 1.9853 -0.3913 3.7002 8 6 1.5981 0.3656 4.8932 9 6 2.1080 -0.3557 6.1425 10 6 1.7103 0.4232 7.3697 11 6 0.6198 0.0766 7.9751 12 6 0.0884 0.7719 9.1973 13 7 1.1142 1.6884 9.7156 14 6 1.3735 1.7834 11.0568 15 1 2.3368 2.1336 11.3971 16 6 0.3984 1.4292 11.9790 17 7 -0.8537 1.2976 11.5951 18 14 0.8631 1.1394 13.7649 19 1 1.4574 2.3780 14.3290 20 1 -0.3508 0.7762 14.5395 21 1 1.8518 0.0345 13.8461 22 6 1.8516 2.5011 8.7323 23 6 2.6054 1.5456 7.8033 24 6 2.0400 -0.7213 -1.2492 25 1 1.6906 -1.7537 -1.2495 26 6 1.5379 0.0023 -2.5138 27 6 2.8327 0.3894 -3.2688 28 6 3.8664 -0.5965 -2.6674 29 8 3.4769 -0.6917 -1.2784 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.1263 -0.7995 1.2057 34 1 1.6053 -1.7198 1.2952 35 1 2.4891 -1.2152 3.7908 36 1 0.5118 0.4439 4.9373 37 1 2.0327 1.3641 4.8469 38 1 3.1943 -0.4344 6.0987 39 1 1.6730 -1.3541 6.1886 40 1 0.0606 -0.7588 7.5801 41 1 -0.1577 0.0322 9.9592 42 1 -0.8064 1.3370 8.9360 43 1 -1.5350 1.0498 12.2395 44 1 2.5599 3.1503 9.2472 45 1 1.1527 3.1042 8.1527 46 1 2.9489 2.0925 6.9253 47 1 3.4676 1.1363 8.3298 48 1 0.9286 -0.6679 -3.1201 49 1 0.9705 0.8928 -2.2437 50 1 2.7205 0.2292 -4.3411 51 1 3.1115 1.4221 -3.0587 52 1 3.7947 -1.5704 -3.1516 53 1 4.8762 -0.1957 -2.7566 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161785373.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:27 Heat of formation + Delta-G solvation = -85.194474 kcal Electronic energy + Delta-G solvation = -28713.372116 eV Core-core repulsion = 24777.171599 eV Total energy + Delta-G solvation = -3936.200517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.12388 -40.22080 -39.45983 -36.85586 -35.68714 -35.06805 -33.20520 -32.94782 -31.52926 -30.66409 -29.29540 -28.33097 -26.92737 -24.82391 -24.32334 -23.76691 -22.72496 -22.44400 -21.41586 -20.85841 -19.46338 -18.20535 -17.64059 -17.27482 -17.04018 -16.83640 -16.76155 -16.56787 -16.23203 -15.74353 -15.54241 -15.26121 -15.06720 -14.84714 -14.58530 -14.38753 -14.14829 -14.07829 -13.80971 -13.41065 -13.31393 -13.19549 -12.89197 -12.82746 -12.76595 -12.57758 -12.53051 -12.35521 -12.28903 -12.20502 -12.09740 -11.87906 -11.79697 -11.67750 -11.65638 -11.46148 -11.24375 -10.74327 -10.68000 -10.52041 -10.04797 -9.48992 -8.75766 -7.88210 -5.30686 1.41717 1.46487 1.49310 1.56176 1.69846 2.28613 2.51016 2.94972 3.28294 3.62495 3.66608 3.69885 3.85698 3.96052 4.05309 4.06459 4.11851 4.13754 4.15326 4.29835 4.37223 4.44296 4.53809 4.54792 4.59085 4.67786 4.69304 4.72127 4.81925 4.85029 4.85521 4.90527 4.95519 4.97860 4.99479 5.00666 5.10302 5.16771 5.18019 5.22838 5.26412 5.36739 5.40615 5.41511 5.49601 5.53700 5.60190 5.87522 6.03000 6.28026 6.33147 6.61714 7.12696 7.32917 7.82661 8.37879 9.20251 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.037529 B = 0.001608 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.905855 B =17412.724916 C =17632.383991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.070 4.070 3 H 0.057 0.943 4 C -0.126 4.126 5 C 0.506 3.494 6 O -0.582 6.582 7 N -0.720 5.720 8 C 0.133 3.867 9 C -0.078 4.078 10 C -0.121 4.121 11 C -0.174 4.174 12 C 0.206 3.794 13 N -0.614 5.614 14 C -0.261 4.261 15 H 0.071 0.929 16 C -0.056 4.056 17 N -0.941 5.941 18 Si 0.973 3.027 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.277 1.277 22 C 0.135 3.865 23 C -0.087 4.087 24 C 0.082 3.918 25 H 0.082 0.918 26 C -0.154 4.154 27 C -0.155 4.155 28 C 0.040 3.960 29 O -0.396 6.396 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.416 0.584 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.056 0.944 42 H 0.002 0.998 43 H 0.250 0.750 44 H 0.059 0.941 45 H 0.016 0.984 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.091 0.909 49 H 0.075 0.925 50 H 0.096 0.904 51 H 0.068 0.932 52 H 0.073 0.927 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.114 -9.297 -31.657 34.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.165 4.165 5 C 0.294 3.706 6 O -0.462 6.462 7 N -0.372 5.372 8 C 0.009 3.991 9 C -0.115 4.115 10 C -0.122 4.122 11 C -0.193 4.193 12 C 0.081 3.919 13 N -0.338 5.338 14 C -0.390 4.390 15 H 0.089 0.911 16 C -0.251 4.251 17 N -0.588 5.588 18 Si 0.800 3.200 19 H -0.201 1.201 20 H -0.220 1.220 21 H -0.204 1.204 22 C 0.010 3.990 23 C -0.126 4.126 24 C 0.024 3.976 25 H 0.099 0.901 26 C -0.192 4.192 27 C -0.192 4.192 28 C -0.036 4.036 29 O -0.316 6.316 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.253 0.747 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.131 0.869 41 H 0.074 0.926 42 H 0.019 0.981 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.034 0.966 46 H 0.102 0.898 47 H 0.087 0.913 48 H 0.110 0.890 49 H 0.094 0.906 50 H 0.115 0.885 51 H 0.087 0.913 52 H 0.091 0.909 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.684 -8.606 -31.430 33.725 hybrid contribution -0.332 -0.070 1.300 1.344 sum 8.352 -8.676 -30.130 32.448 Atomic orbital electron populations 1.21913 0.93875 1.02384 1.02514 1.20971 0.96299 0.99021 0.92593 0.92410 1.21698 1.04159 1.00307 0.90373 1.21317 0.78230 0.85395 0.85635 1.90671 1.41690 1.26635 1.87243 1.45991 1.57764 1.28275 1.05213 1.21117 0.99088 0.95241 0.83658 1.20797 1.02510 0.98276 0.89959 1.20594 0.96335 0.98495 0.96803 1.22820 0.98020 1.00480 0.98024 1.19354 0.89168 0.91441 0.91906 1.44408 1.43009 1.44151 1.02280 1.19520 0.96713 1.40242 0.82565 0.91102 1.25808 0.94683 1.02478 1.02105 1.70198 1.00349 1.53293 1.34980 0.85261 0.76633 0.78378 0.79696 1.20058 1.22001 1.20351 1.21147 0.94218 0.92717 0.90940 1.20711 0.97404 0.95465 0.98979 1.22840 0.80921 0.99251 0.94549 0.90059 1.23061 0.98584 1.01600 0.95908 1.23140 0.94625 1.00068 1.01404 1.23751 0.99496 0.99167 0.81217 1.88887 1.20963 1.95264 1.26524 0.91726 0.91545 0.93003 0.87334 0.86577 0.74659 0.93477 0.92737 0.89007 0.89775 0.86890 0.92627 0.98051 0.94129 0.92233 0.96580 0.89773 0.91272 0.89046 0.90609 0.88498 0.91301 0.90908 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.68 71.98 0.62 -1.89 16 2 C -0.07 -1.16 1.69 -10.79 -0.02 -1.18 16 3 H 0.06 1.27 7.95 -2.39 -0.02 1.26 16 4 C -0.13 -1.91 5.11 29.85 0.15 -1.76 16 5 C 0.51 11.38 7.55 87.65 0.66 12.04 16 6 O -0.58 -18.43 13.97 -3.02 -0.04 -18.47 16 7 N -0.72 -13.72 5.56 -463.06 -2.57 -16.29 16 8 C 0.13 3.26 5.66 86.38 0.49 3.75 16 9 C -0.08 -1.79 5.32 29.85 0.16 -1.64 16 10 C -0.12 -4.04 5.11 -15.14 -0.08 -4.12 16 11 C -0.17 -6.84 9.47 27.11 0.26 -6.58 16 12 C 0.21 10.56 5.23 85.42 0.45 11.00 16 13 N -0.61 -32.34 3.01 -703.38 -2.12 -34.46 16 14 C -0.26 -14.79 9.71 84.03 0.82 -13.98 16 15 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16 16 C -0.06 -3.22 5.01 84.86 0.43 -2.79 16 17 N -0.94 -57.27 11.08 21.65 0.24 -57.03 16 18 Si 0.97 45.78 29.58 68.60 2.03 47.81 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 C 0.14 5.83 6.58 86.25 0.57 6.40 16 23 C -0.09 -2.97 5.95 29.65 0.18 -2.79 16 24 C 0.08 1.05 2.97 30.97 0.09 1.14 16 25 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 26 C -0.15 -1.56 6.03 31.59 0.19 -1.37 16 27 C -0.15 -1.37 7.16 31.90 0.23 -1.15 16 28 C 0.04 0.40 7.72 72.66 0.56 0.96 16 29 O -0.40 -6.22 10.54 -148.98 -1.57 -7.79 16 30 H 0.06 0.94 6.55 -2.39 -0.02 0.92 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 1.22 5.95 -2.39 -0.01 1.21 16 33 H 0.11 1.51 7.61 -2.39 -0.02 1.49 16 34 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.42 4.99 8.47 -92.71 -0.79 4.20 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.05 1.50 8.09 -2.39 -0.02 1.48 16 38 H 0.09 1.76 8.11 -2.39 -0.02 1.74 16 39 H 0.08 1.72 7.78 -2.39 -0.02 1.70 16 40 H 0.11 3.87 7.73 -2.91 -0.02 3.84 16 41 H 0.06 3.17 6.41 -2.39 -0.02 3.15 16 42 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 43 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 44 H 0.06 2.47 7.96 -2.38 -0.02 2.45 16 45 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 47 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 48 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.08 0.89 6.50 -2.39 -0.02 0.87 16 50 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 52 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 53 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -73.96 411.08 1.81 -72.15 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.09 Total: 18.02 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 5.75 Total: -3.94 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -4.45 Total: -107.78 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -1.61 Total: -26.26 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -73.96 1.81 -72.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161785373.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.043 kcal (2) G-P(sol) polarization free energy of solvation -73.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds