Wall clock time and date at job start Tue Mar 31 2020 19:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46984 * 2 1 4 4 C 1.52994 * 109.47134 * 120.00085 * 2 1 3 5 5 C 1.50698 * 109.46890 * 295.00006 * 4 2 1 6 6 O 1.21274 * 120.00328 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99944 * 180.02562 * 5 4 2 8 8 C 1.46493 * 120.00158 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47409 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47494 * 180.02562 * 9 8 7 11 11 C 1.29451 * 117.69740 * 94.74082 * 10 9 8 12 12 C 1.50320 * 123.65510 * 180.59028 * 11 10 9 13 13 N 1.47003 * 109.20235 * 349.49838 * 12 11 10 14 14 C 1.36935 * 121.37400 * 222.76713 * 13 12 11 15 15 H 1.07996 * 120.00469 * 155.95717 * 14 13 12 16 16 C 1.38817 * 119.99773 * 335.94822 * 14 13 12 17 17 N 1.31612 * 119.99995 * 344.53953 * 16 14 13 18 18 Si 1.86797 * 119.99793 * 164.53822 * 16 14 13 19 19 H 1.48501 * 109.47454 * 60.00442 * 18 16 14 20 20 H 1.48497 * 109.47123 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47153 * 300.00059 * 18 16 14 22 22 C 1.47337 * 117.25055 * 42.73690 * 13 12 11 23 23 C 1.49978 * 117.69220 * 275.00147 * 10 9 8 24 24 C 1.53007 * 109.46934 * 240.00408 * 2 1 3 25 25 H 1.09005 * 110.32555 * 185.70369 * 24 2 1 26 26 C 1.54471 * 110.37502 * 63.45036 * 24 2 1 27 27 C 1.54513 * 104.06069 * 217.18872 * 26 24 2 28 28 C 1.54480 * 104.06310 * 359.97438 * 27 26 24 29 29 O 1.44426 * 110.37024 * 307.94367 * 24 2 1 30 30 H 1.09002 * 109.47328 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47630 * 300.00114 * 1 2 3 32 32 H 1.09004 * 109.47433 * 60.00523 * 1 2 3 33 33 H 1.09003 * 109.47166 * 174.99840 * 4 2 1 34 34 H 1.09001 * 109.47382 * 55.00557 * 4 2 1 35 35 H 0.97005 * 119.99863 * 359.97438 * 7 5 4 36 36 H 1.09002 * 109.47160 * 60.00059 * 8 7 5 37 37 H 1.09001 * 109.47387 * 300.00151 * 8 7 5 38 38 H 1.09003 * 109.46992 * 59.99677 * 9 8 7 39 39 H 1.09005 * 109.46910 * 300.00216 * 9 8 7 40 40 H 1.07995 * 118.17341 * 0.85677 * 11 10 9 41 41 H 1.09002 * 109.66737 * 229.47860 * 12 11 10 42 42 H 1.09000 * 109.38210 * 109.34507 * 12 11 10 43 43 H 0.97009 * 120.00164 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.77495 * 178.61570 * 22 13 12 45 45 H 1.09006 * 109.81782 * 57.84321 * 22 13 12 46 46 H 1.09003 * 109.31263 * 281.29048 * 23 10 9 47 47 H 1.09001 * 109.31113 * 40.71652 * 23 10 9 48 48 H 1.09002 * 110.51167 * 335.82727 * 26 24 2 49 49 H 1.08997 * 110.51515 * 98.54498 * 26 24 2 50 50 H 1.09000 * 110.51303 * 118.64572 * 27 26 24 51 51 H 1.09002 * 110.50987 * 241.21691 * 27 26 24 52 52 H 1.09000 * 110.36973 * 142.80659 * 28 27 26 53 53 H 1.09000 * 110.37285 * 265.14710 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4765 6 8 1.0109 1.0869 2.3632 7 7 1.9853 -0.3914 3.7001 8 6 1.5972 0.3649 4.8932 9 6 2.1073 -0.3562 6.1425 10 6 1.7076 0.4214 7.3699 11 6 0.6148 0.0758 7.9717 12 6 0.0846 0.7662 9.1972 13 7 1.1088 1.6839 9.7164 14 6 1.3682 1.7776 11.0577 15 1 2.3310 2.1287 11.3984 16 6 0.3934 1.4212 11.9796 17 7 -0.8584 1.2883 11.5955 18 14 0.8585 1.1305 13.7652 19 1 1.4511 2.3692 14.3305 20 1 -0.3546 0.7637 14.5393 21 1 1.8487 0.0267 13.8454 22 6 1.8453 2.4984 8.7340 23 6 2.6009 1.5449 7.8046 24 6 2.0399 -0.7212 -1.2494 25 1 3.1251 -0.8182 -1.2141 26 6 1.6090 0.0393 -2.5229 27 6 1.2884 -1.0803 -3.5384 28 6 1.5643 -2.3848 -2.7583 29 8 1.4226 -2.0216 -1.3664 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 3.1263 -0.7995 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 2.4892 -1.2153 3.7907 36 1 0.5108 0.4423 4.9370 37 1 2.0310 1.3638 4.8473 38 1 3.1937 -0.4341 6.0990 39 1 1.6731 -1.3550 6.1882 40 1 0.0550 -0.7575 7.5735 41 1 -0.1605 0.0255 9.9584 42 1 -0.8109 1.3300 8.9358 43 1 -1.5395 1.0389 12.2397 44 1 2.5522 3.1483 9.2497 45 1 1.1455 3.1009 8.1547 46 1 3.4636 1.1366 8.3311 47 1 2.9438 2.0931 6.9271 48 1 0.7222 0.6418 -2.3263 49 1 2.4235 0.6646 -2.8885 50 1 0.2432 -1.0313 -3.8437 51 1 1.9429 -1.0070 -4.4070 52 1 0.8352 -3.1491 -3.0271 53 1 2.5763 -2.7383 -2.9559 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161785374.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:32 Heat of formation + Delta-G solvation = -83.551901 kcal Electronic energy + Delta-G solvation = -28714.098494 eV Core-core repulsion = 24777.969204 eV Total energy + Delta-G solvation = -3936.129289 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.11869 -40.22053 -39.45622 -36.83548 -35.54966 -35.05987 -33.18703 -32.90856 -31.52693 -30.65739 -29.27811 -28.39851 -26.94612 -24.96976 -24.46695 -23.82551 -22.50531 -22.34907 -21.45288 -20.68443 -19.46025 -18.14079 -17.57052 -17.29262 -17.04664 -16.90664 -16.64438 -16.53990 -16.14716 -15.74883 -15.59658 -15.28957 -15.11452 -14.88089 -14.68784 -14.46639 -14.20109 -14.07007 -13.80241 -13.39708 -13.27727 -13.14426 -12.84066 -12.76509 -12.64989 -12.57473 -12.49650 -12.36321 -12.30438 -12.20469 -12.12397 -11.86358 -11.77733 -11.68693 -11.66788 -11.30567 -11.23692 -10.70340 -10.67937 -10.59829 -10.03912 -9.48821 -8.75589 -7.88118 -5.30583 1.41915 1.46513 1.49482 1.56221 1.70868 2.29149 2.51121 3.01572 3.28459 3.61857 3.67688 3.73510 3.87140 3.96525 4.05130 4.07829 4.09529 4.14277 4.17304 4.30032 4.40600 4.44085 4.52441 4.54833 4.59660 4.69429 4.70966 4.76573 4.80416 4.86188 4.88960 4.91050 4.96903 4.98071 5.00277 5.03586 5.10721 5.17427 5.18690 5.22980 5.25335 5.36860 5.40862 5.43390 5.49701 5.56979 5.60336 5.87985 5.99160 6.28172 6.33174 6.62662 7.12721 7.33920 7.82870 8.38083 9.20368 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.039583 B = 0.001580 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.201651 B =17715.747698 C =17768.409533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 H 0.081 0.919 4 C -0.126 4.126 5 C 0.506 3.494 6 O -0.581 6.581 7 N -0.720 5.720 8 C 0.133 3.867 9 C -0.078 4.078 10 C -0.121 4.121 11 C -0.176 4.176 12 C 0.207 3.793 13 N -0.614 5.614 14 C -0.260 4.260 15 H 0.072 0.928 16 C -0.056 4.056 17 N -0.942 5.942 18 Si 0.973 3.027 19 H -0.274 1.274 20 H -0.294 1.294 21 H -0.277 1.277 22 C 0.135 3.865 23 C -0.087 4.087 24 C 0.080 3.920 25 H 0.084 0.916 26 C -0.157 4.157 27 C -0.152 4.152 28 C 0.038 3.962 29 O -0.389 6.389 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.417 0.583 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.055 0.945 42 H 0.001 0.999 43 H 0.250 0.750 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.071 0.929 49 H 0.088 0.912 50 H 0.071 0.929 51 H 0.090 0.910 52 H 0.094 0.906 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.396 -9.015 -31.469 34.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 H 0.100 0.900 4 C -0.165 4.165 5 C 0.294 3.706 6 O -0.462 6.462 7 N -0.372 5.372 8 C 0.009 3.991 9 C -0.116 4.116 10 C -0.121 4.121 11 C -0.195 4.195 12 C 0.082 3.918 13 N -0.338 5.338 14 C -0.390 4.390 15 H 0.090 0.910 16 C -0.251 4.251 17 N -0.588 5.588 18 Si 0.800 3.200 19 H -0.200 1.200 20 H -0.221 1.221 21 H -0.203 1.203 22 C 0.010 3.990 23 C -0.125 4.125 24 C 0.023 3.977 25 H 0.102 0.898 26 C -0.195 4.195 27 C -0.190 4.190 28 C -0.038 4.038 29 O -0.308 6.308 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.254 0.746 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.018 0.982 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.034 0.966 46 H 0.088 0.912 47 H 0.104 0.896 48 H 0.090 0.910 49 H 0.107 0.893 50 H 0.090 0.910 51 H 0.109 0.891 52 H 0.113 0.887 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.727 -8.438 -31.258 33.806 hybrid contribution -0.341 -0.119 1.255 1.306 sum 9.386 -8.557 -30.003 32.581 Atomic orbital electron populations 1.21802 0.95311 1.01437 1.01524 1.20913 0.96516 0.98950 0.92208 0.90036 1.21716 1.04357 1.00154 0.90316 1.21313 0.78312 0.85339 0.85643 1.90677 1.41495 1.26754 1.87235 1.45989 1.57771 1.28281 1.05204 1.21115 0.98976 0.95358 0.83662 1.20799 1.02586 0.98207 0.89963 1.20606 0.96239 0.98494 0.96810 1.22813 0.98055 1.00538 0.98094 1.19343 0.89191 0.91462 0.91838 1.44402 1.43127 1.44005 1.02306 1.19525 0.96752 1.40198 0.82558 0.91048 1.25813 0.94676 1.02490 1.02121 1.70197 1.00396 1.53257 1.34999 0.85259 0.76623 0.78392 0.79689 1.20008 1.22051 1.20347 1.21151 0.94224 0.92718 0.90956 1.20714 0.97383 0.95397 0.99020 1.23093 0.97213 0.83012 0.94421 0.89784 1.23074 1.02813 0.98793 0.94786 1.22923 1.02944 0.94182 0.98963 1.23563 1.02079 0.97483 0.80702 1.89142 1.80010 1.34548 1.27126 0.92872 0.93442 0.92554 0.86224 0.87499 0.74646 0.93763 0.92435 0.88792 0.89985 0.87045 0.92646 0.98172 0.94144 0.92186 0.96592 0.91225 0.89603 0.90986 0.89302 0.91003 0.89112 0.88734 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 71.98 0.61 -2.27 16 2 C -0.07 -1.07 1.91 -10.79 -0.02 -1.09 16 3 H 0.08 1.44 7.96 -2.39 -0.02 1.42 16 4 C -0.13 -1.79 5.06 29.85 0.15 -1.64 16 5 C 0.51 10.97 7.55 87.66 0.66 11.63 16 6 O -0.58 -17.98 13.96 -3.01 -0.04 -18.03 16 7 N -0.72 -13.26 5.56 -463.07 -2.57 -15.84 16 8 C 0.13 3.20 5.66 86.38 0.49 3.69 16 9 C -0.08 -1.77 5.32 29.85 0.16 -1.61 16 10 C -0.12 -3.99 5.11 -15.13 -0.08 -4.06 16 11 C -0.18 -6.92 9.47 27.11 0.26 -6.66 16 12 C 0.21 10.60 5.23 85.42 0.45 11.04 16 13 N -0.61 -32.27 3.01 -703.41 -2.12 -34.39 16 14 C -0.26 -14.76 9.71 84.04 0.82 -13.94 16 15 H 0.07 3.89 7.88 -2.91 -0.02 3.86 16 16 C -0.06 -3.23 5.01 84.86 0.43 -2.81 16 17 N -0.94 -57.38 11.08 21.65 0.24 -57.14 16 18 Si 0.97 45.75 29.58 68.60 2.03 47.78 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 C 0.13 5.77 6.58 86.25 0.57 6.34 16 23 C -0.09 -2.91 5.95 29.65 0.18 -2.73 16 24 C 0.08 0.98 2.96 31.10 0.09 1.07 16 25 H 0.08 0.77 8.14 -2.38 -0.02 0.76 16 26 C -0.16 -1.62 6.47 31.61 0.20 -1.42 16 27 C -0.15 -1.26 7.09 31.61 0.22 -1.03 16 28 C 0.04 0.37 7.63 72.49 0.55 0.92 16 29 O -0.39 -5.82 10.23 -148.98 -1.52 -7.34 16 30 H 0.05 1.08 7.54 -2.39 -0.02 1.07 16 31 H 0.05 1.23 5.95 -2.39 -0.01 1.21 16 32 H 0.06 1.03 6.30 -2.39 -0.02 1.02 16 33 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 1.41 8.07 -2.39 -0.02 1.39 16 35 H 0.42 4.72 8.47 -92.70 -0.79 3.94 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.53 8.09 -2.39 -0.02 1.51 16 38 H 0.09 1.73 8.11 -2.39 -0.02 1.71 16 39 H 0.08 1.69 7.79 -2.38 -0.02 1.67 16 40 H 0.11 3.86 7.74 -2.91 -0.02 3.84 16 41 H 0.06 3.17 6.41 -2.39 -0.02 3.15 16 42 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 44 H 0.06 2.47 7.96 -2.39 -0.02 2.45 16 45 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.09 2.37 8.08 -2.39 -0.02 2.35 16 48 H 0.07 0.90 6.01 -2.39 -0.01 0.88 16 49 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 52 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -73.81 410.16 1.84 -71.97 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.09 Total: 17.56 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 5.74 Total: -4.58 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -4.45 Total: -107.36 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -1.57 Total: -25.37 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -73.81 1.84 -71.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161785374.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.586 kcal (2) G-P(sol) polarization free energy of solvation -73.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds