Wall clock time and date at job start Tue Mar 31 2020 20:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47228 * 189.44952 * 3 2 1 5 5 C 1.42900 * 113.99860 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47352 * 329.99131 * 5 4 3 7 7 C 1.52991 * 109.47401 * 89.99954 * 5 4 3 8 8 C 1.50707 * 109.46734 * 209.99426 * 5 4 3 9 9 O 1.21279 * 120.00038 * 345.92091 * 8 5 4 10 10 N 1.34775 * 119.99595 * 165.91664 * 8 5 4 11 11 C 1.46501 * 120.00462 * 6.28169 * 10 8 5 12 12 C 1.53003 * 109.47223 * 96.11577 * 11 10 8 13 13 C 1.52991 * 109.47009 * 186.05898 * 12 11 10 14 14 N 1.46498 * 109.47300 * 179.97438 * 13 12 11 15 15 C 1.36932 * 120.00603 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99906 * 0.02562 * 15 14 13 17 17 C 1.38808 * 120.00487 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99903 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00256 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47415 * 90.00334 * 19 17 15 21 21 H 1.48500 * 109.47466 * 210.00013 * 19 17 15 22 22 H 1.48499 * 109.47360 * 330.00172 * 19 17 15 23 23 C 1.46504 * 119.99721 * 186.27800 * 10 8 5 24 24 C 1.52998 * 109.47002 * 95.40739 * 23 10 8 25 25 C 1.54268 * 110.03147 * 292.09772 * 24 23 10 26 26 C 1.54967 * 104.15828 * 217.13948 * 25 24 23 27 27 C 1.54886 * 102.78184 * 37.88527 * 26 25 24 28 28 C 1.53880 * 110.03202 * 174.88242 * 24 23 10 29 29 H 4.38447 * 5.44522 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.47384 * 69.44639 * 3 2 1 31 31 H 1.08999 * 109.47086 * 309.44742 * 3 2 1 32 32 H 1.09007 * 109.47046 * 307.59927 * 7 5 4 33 33 H 1.09005 * 109.47627 * 187.59764 * 7 5 4 34 34 H 1.08997 * 109.47691 * 67.59728 * 7 5 4 35 35 H 1.08997 * 109.47224 * 216.12268 * 11 10 8 36 36 H 1.09004 * 109.46566 * 336.11633 * 11 10 8 37 37 H 1.08991 * 109.46805 * 306.06186 * 12 11 10 38 38 H 1.08999 * 109.46923 * 66.06145 * 12 11 10 39 39 H 1.09003 * 109.47251 * 300.00135 * 13 12 11 40 40 H 1.09002 * 109.47562 * 60.00263 * 13 12 11 41 41 H 0.97000 * 119.99779 * 0.02562 * 14 13 12 42 42 H 0.97007 * 120.00200 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.47216 * 215.40806 * 23 10 8 44 44 H 1.09003 * 109.46960 * 335.40630 * 23 10 8 45 45 H 1.08997 * 110.01960 * 53.48838 * 24 23 10 46 46 H 1.09005 * 110.48683 * 335.78039 * 25 24 23 47 47 H 1.08998 * 110.48535 * 98.42731 * 25 24 23 48 48 H 1.09004 * 110.72172 * 279.57394 * 26 25 24 49 49 H 1.09002 * 110.92692 * 156.29509 * 26 25 24 50 50 H 1.08998 * 110.48912 * 203.40481 * 27 26 25 51 51 H 1.09004 * 110.59840 * 80.81951 * 27 26 25 52 52 H 1.09007 * 110.02822 * 238.56767 * 28 24 23 53 53 H 1.09001 * 110.03015 * 359.94652 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1217 1.3298 0.2212 5 6 4.5462 1.4418 0.2391 6 1 4.9793 0.5109 0.6048 7 6 5.0539 1.7188 -1.1773 8 6 4.9495 2.5745 1.1477 9 8 4.1209 3.3782 1.5195 10 7 6.2312 2.6942 1.5472 11 6 7.2575 1.8087 0.9914 12 6 7.9622 2.5112 -0.1709 13 6 8.9270 1.5352 -0.8471 14 7 9.6014 2.2076 -1.9603 15 6 10.5172 1.5273 -2.7176 16 1 10.7421 0.4947 -2.4945 17 6 11.1566 2.1645 -3.7720 18 7 10.8830 3.4230 -4.0437 19 14 12.4053 1.2362 -4.8055 20 1 11.7152 0.5812 -5.9458 21 1 13.4236 2.1853 -5.3225 22 1 13.0698 0.2039 -3.9701 23 6 6.5980 3.7099 2.5371 24 6 6.6142 3.0806 3.9316 25 6 5.1810 2.6979 4.3552 26 6 5.1388 3.0082 5.8729 27 6 5.9785 4.3052 5.9810 28 6 7.1213 4.1018 4.9650 29 1 -1.0503 -0.0003 -0.0002 30 1 3.0095 -0.3600 -0.9622 31 1 3.0095 -0.6521 0.7936 32 1 4.6497 0.9719 -1.8607 33 1 6.1428 1.6704 -1.1889 34 1 4.7310 2.7113 -1.4915 35 1 7.9860 1.5663 1.7650 36 1 6.7903 0.8917 0.6322 37 1 7.2206 2.8491 -0.8946 38 1 8.5186 3.3691 0.2068 39 1 9.6687 1.1973 -0.1232 40 1 8.3708 0.6773 -1.2247 41 1 9.3998 3.1351 -2.1605 42 1 11.3300 3.8685 -4.7803 43 1 7.5877 4.1033 2.3045 44 1 5.8699 4.5207 2.5128 45 1 7.2529 2.1973 3.9350 46 1 4.4503 3.3056 3.8214 47 1 5.0006 1.6379 4.1765 48 1 5.5985 2.2017 6.4444 49 1 4.1157 3.1815 6.2066 50 1 6.3792 4.4174 6.9885 51 1 5.3783 5.1742 5.7112 52 1 8.0056 3.7137 5.4704 53 1 7.3568 5.0454 4.4728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177317389.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:02 Heat of formation + Delta-G solvation = -43.421788 kcal Electronic energy + Delta-G solvation = -29926.622366 eV Core-core repulsion = 25992.233249 eV Total energy + Delta-G solvation = -3934.389117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.56536 -39.44124 -38.51862 -37.72722 -36.26672 -34.47841 -33.91267 -32.69818 -31.41054 -30.48217 -29.50562 -28.10456 -26.99665 -26.44012 -24.66150 -24.07980 -22.51218 -21.54254 -20.73695 -20.13052 -19.60919 -19.07299 -18.36468 -17.93135 -17.26591 -16.81266 -16.60234 -16.36868 -16.27338 -15.92494 -15.75910 -15.35336 -15.23607 -15.01333 -14.63035 -14.29082 -14.20142 -13.94249 -13.69463 -13.45039 -13.41211 -13.16773 -13.00967 -12.76395 -12.75696 -12.49029 -12.32511 -12.10304 -11.98071 -11.92429 -11.90115 -11.84295 -11.77212 -11.71219 -11.69602 -11.56091 -11.49962 -11.26385 -10.88796 -10.83171 -10.44595 -9.65582 -8.95868 -7.92205 -5.20605 1.31402 1.49855 1.51276 1.51723 1.59677 1.80436 1.94997 2.58967 2.94048 3.33674 3.42549 3.60611 3.70283 3.73520 3.80494 3.80864 3.89947 4.00160 4.05042 4.23882 4.26963 4.35725 4.43753 4.44861 4.54291 4.59588 4.60993 4.63130 4.63481 4.67647 4.72431 4.76943 4.83303 4.88939 4.89850 4.96339 4.99802 5.07526 5.07924 5.13649 5.24839 5.28565 5.36453 5.46397 5.48607 5.49623 5.55066 5.61633 5.96649 6.30035 6.34304 6.58198 7.12443 7.36534 8.14536 8.34592 9.31575 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008130 B = 0.003021 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3443.150071 B = 9266.080245 C =12159.367329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.238 4.238 3 C 0.162 3.838 4 O -0.384 6.384 5 C 0.076 3.924 6 H 0.121 0.879 7 C -0.182 4.182 8 C 0.516 3.484 9 O -0.563 6.563 10 N -0.599 5.599 11 C 0.112 3.888 12 C -0.139 4.139 13 C 0.154 3.846 14 N -0.750 5.750 15 C -0.239 4.239 16 H 0.081 0.919 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.971 3.029 20 H -0.288 1.288 21 H -0.299 1.299 22 H -0.266 1.266 23 C 0.118 3.882 24 C -0.100 4.100 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.124 4.124 28 C -0.117 4.117 29 H 0.254 0.746 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.030 0.970 40 H 0.033 0.967 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.050 0.950 47 H 0.053 0.947 48 H 0.075 0.925 49 H 0.060 0.940 50 H 0.077 0.923 51 H 0.056 0.944 52 H 0.078 0.922 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.289 -7.352 18.803 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.238 4.238 3 C 0.087 3.913 4 O -0.303 6.303 5 C 0.015 3.985 6 H 0.139 0.861 7 C -0.239 4.239 8 C 0.304 3.696 9 O -0.441 6.441 10 N -0.331 5.331 11 C -0.011 4.011 12 C -0.178 4.178 13 C 0.027 3.973 14 N -0.392 5.392 15 C -0.371 4.371 16 H 0.098 0.902 17 C -0.271 4.271 18 N -0.623 5.623 19 Si 0.800 3.200 20 H -0.215 1.215 21 H -0.226 1.226 22 H -0.191 1.191 23 C -0.004 4.004 24 C -0.119 4.119 25 C -0.157 4.157 26 C -0.160 4.160 27 C -0.161 4.161 28 C -0.155 4.155 29 H 0.270 0.730 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.103 0.897 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.095 0.905 51 H 0.075 0.925 52 H 0.097 0.903 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.737 -6.936 19.001 25.026 hybrid contribution 0.531 0.271 -1.192 1.332 sum -14.206 -6.665 17.809 23.736 Atomic orbital electron populations 1.25871 0.96880 0.95915 0.99423 1.23098 0.94983 1.03647 1.02076 1.19457 0.84761 0.84098 1.03005 1.88061 1.20054 1.28738 1.93450 1.22013 0.82217 0.98398 0.95830 0.86133 1.22547 1.03612 1.03048 0.94704 1.20721 0.82324 0.86274 0.80321 1.90662 1.51632 1.44124 1.57694 1.47890 1.06742 1.36513 1.41974 1.21768 0.90739 0.92532 0.96028 1.22181 0.98532 0.99335 0.97733 1.20755 0.93345 0.94405 0.88774 1.42624 1.48664 1.12845 1.35080 1.19658 1.14135 0.95679 1.07642 0.90156 1.25565 1.03225 0.97081 1.01234 1.69821 1.47741 1.11941 1.32834 0.85170 0.78522 0.77411 0.78860 1.21529 1.22637 1.19119 1.21728 1.01238 0.90373 0.87091 1.22130 0.96873 0.99334 0.93572 1.22427 0.96554 1.00241 0.96480 1.22495 0.99945 0.98065 0.95459 1.22346 0.96780 0.97406 0.99573 1.22143 0.98590 0.98784 0.95951 0.73027 0.88722 0.88632 0.89492 0.88726 0.93482 0.87651 0.87930 0.91926 0.92231 0.95252 0.94884 0.79733 0.94179 0.89434 0.91660 0.89656 0.93122 0.92828 0.90662 0.92121 0.90480 0.92521 0.90298 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 19.25 74.32 1.43 -1.52 16 2 C -0.24 -5.22 13.73 31.12 0.43 -4.80 16 3 C 0.16 3.11 6.22 70.18 0.44 3.54 16 4 O -0.38 -10.23 9.52 -130.33 -1.24 -11.47 16 5 C 0.08 1.71 2.29 29.85 0.07 1.77 16 6 H 0.12 1.81 6.55 -2.39 -0.02 1.79 16 7 C -0.18 -4.18 8.82 71.98 0.63 -3.54 16 8 C 0.52 14.09 6.40 87.66 0.56 14.65 16 9 O -0.56 -20.17 14.47 15.62 0.23 -19.94 16 10 N -0.60 -13.31 2.39 -821.78 -1.96 -15.27 16 11 C 0.11 2.10 4.91 86.38 0.42 2.52 16 12 C -0.14 -3.72 4.76 30.59 0.15 -3.57 16 13 C 0.15 5.19 6.24 86.38 0.54 5.73 16 14 N -0.75 -35.88 5.60 -343.47 -1.92 -37.81 16 15 C -0.24 -12.77 9.99 84.03 0.84 -11.93 16 16 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 17 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 18 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 19 Si 0.97 44.99 29.55 68.60 2.03 47.02 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 C 0.12 2.53 4.67 86.38 0.40 2.93 16 24 C -0.10 -1.77 3.15 -10.07 -0.03 -1.80 16 25 C -0.12 -2.46 5.65 31.70 0.18 -2.28 16 26 C -0.12 -2.04 6.91 31.91 0.22 -1.82 16 27 C -0.12 -1.91 6.83 31.67 0.22 -1.69 16 28 C -0.12 -1.79 6.46 31.32 0.20 -1.59 16 29 H 0.25 2.28 7.80 -4.40 -0.03 2.24 16 30 H 0.10 1.42 7.75 -2.39 -0.02 1.41 16 31 H 0.10 1.35 8.09 -2.39 -0.02 1.33 16 32 H 0.09 1.70 7.75 -2.38 -0.02 1.68 16 33 H 0.09 2.19 3.84 -2.38 -0.01 2.18 16 34 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 35 H 0.11 1.57 8.02 -2.39 -0.02 1.55 16 36 H 0.10 1.52 5.40 -2.38 -0.01 1.51 16 37 H 0.06 1.85 5.88 -2.39 -0.01 1.84 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.37 19.39 7.67 -92.71 -0.71 18.68 16 42 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 43 H 0.09 1.71 8.11 -2.39 -0.02 1.69 16 44 H 0.06 1.72 7.06 -2.39 -0.02 1.70 16 45 H 0.09 1.33 8.05 -2.39 -0.02 1.31 16 46 H 0.05 1.37 6.15 -2.38 -0.01 1.36 16 47 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 52 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 53 H 0.07 1.03 7.67 -2.39 -0.02 1.01 16 Total: -1.00 -74.64 421.02 4.75 -69.89 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.17 Total: 33.55 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 7.16 Total: -7.35 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -3.60 Total: -111.70 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.01 Total: -31.41 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -74.64 4.75 -69.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177317389.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.467 kcal (2) G-P(sol) polarization free energy of solvation -74.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds