Wall clock time and date at job start Tue Mar 31 2020 20:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99977 * 2 1 4 4 O 1.42903 * 109.46722 * 135.00083 * 3 2 1 5 5 C 1.42908 * 113.99656 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46963 * 330.00103 * 5 4 3 7 7 C 1.53001 * 109.47024 * 90.00103 * 5 4 3 8 8 C 1.50693 * 109.46900 * 210.00328 * 5 4 3 9 9 O 1.21281 * 120.00149 * 348.42600 * 8 5 4 10 10 N 1.34776 * 119.99867 * 168.43475 * 8 5 4 11 11 C 1.46926 * 120.63123 * 184.65640 * 10 8 5 12 12 C 1.53621 * 108.54704 * 126.36540 * 11 10 8 13 13 C 1.53046 * 109.23959 * 54.85456 * 12 11 10 14 14 C 1.53002 * 109.46048 * 178.48968 * 13 12 11 15 15 H 1.08999 * 109.87710 * 299.30713 * 14 13 12 16 16 C 1.54330 * 109.87713 * 60.48059 * 14 13 12 17 17 C 1.55160 * 102.93893 * 141.60899 * 16 14 13 18 18 C 1.54909 * 101.58604 * 324.49866 * 17 16 14 19 19 N 1.47022 * 109.88210 * 178.28438 * 14 13 12 20 20 C 1.36940 * 125.64148 * 61.68393 * 19 14 13 21 21 H 1.07991 * 120.00373 * 12.02786 * 20 19 14 22 22 C 1.38814 * 119.99326 * 192.01993 * 20 19 14 23 23 N 1.31617 * 120.00699 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99695 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46907 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47106 * 120.00147 * 24 22 20 27 27 H 1.48501 * 109.47370 * 240.00362 * 24 22 20 28 28 C 1.53042 * 109.53914 * 298.51189 * 13 12 11 29 29 C 1.46921 * 120.63102 * 4.93335 * 10 8 5 30 30 H 1.08001 * 119.99682 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00243 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.00294 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.46999 * 15.00436 * 3 2 1 34 34 H 1.08999 * 109.47067 * 254.99921 * 3 2 1 35 35 H 1.09001 * 109.47205 * 64.67032 * 7 5 4 36 36 H 1.08997 * 109.46829 * 184.66999 * 7 5 4 37 37 H 1.08997 * 109.47073 * 304.66868 * 7 5 4 38 38 H 1.09008 * 109.58712 * 246.19789 * 11 10 8 39 39 H 1.09001 * 109.58926 * 6.62222 * 11 10 8 40 40 H 1.08994 * 109.63441 * 294.86891 * 12 11 10 41 41 H 1.08997 * 109.43681 * 174.72170 * 12 11 10 42 42 H 1.09003 * 109.45988 * 58.53511 * 13 12 11 43 43 H 1.08999 * 110.72082 * 259.96909 * 16 14 13 44 44 H 1.08993 * 110.72276 * 23.24975 * 16 14 13 45 45 H 1.08997 * 111.00300 * 206.42298 * 17 16 14 46 46 H 1.09003 * 111.03936 * 82.58629 * 17 16 14 47 47 H 1.08998 * 110.36390 * 278.17556 * 18 17 16 48 48 H 1.08998 * 110.46271 * 155.89247 * 18 17 16 49 49 H 0.96996 * 120.00481 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.49516 * 301.41736 * 28 13 12 51 51 H 1.09000 * 109.49793 * 181.31339 * 28 13 12 52 52 H 1.09004 * 109.58918 * 353.37173 * 29 10 8 53 53 H 1.09005 * 109.58974 * 113.80020 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4353 1.0329 6 1 3.9128 2.9320 0.0627 7 6 3.3030 3.3708 2.0817 8 6 5.3201 2.0862 1.4258 9 8 5.5813 0.9697 1.8208 10 7 6.2929 3.0148 1.3383 11 6 7.6913 2.6628 1.6200 12 6 8.5530 3.0871 0.4210 13 6 8.3244 4.5734 0.1364 14 6 9.2086 5.0103 -1.0333 15 1 10.2582 4.8601 -0.7807 16 6 8.8478 4.1989 -2.2955 17 6 8.9604 5.2519 -3.4295 18 6 8.4507 6.5304 -2.7186 19 7 8.9661 6.4273 -1.3412 20 6 9.1840 7.4775 -0.4899 21 1 9.7421 7.3265 0.4222 22 6 8.6876 8.7364 -0.7995 23 7 8.0071 8.9205 -1.9110 24 14 8.9854 10.1692 0.3614 25 1 9.7718 9.7029 1.5317 26 1 9.7393 11.2333 -0.3488 27 1 7.6823 10.7106 0.8241 28 6 6.8545 4.8060 -0.2208 29 6 5.9744 4.3998 0.9655 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3855 2.1161 0.2661 34 1 2.4755 1.4868 -0.9926 35 1 3.3735 2.9074 3.0658 36 1 3.8485 4.3144 2.0845 37 1 2.2561 3.5570 1.8420 38 1 8.0260 3.1845 2.5167 39 1 7.7743 1.5862 1.7686 40 1 8.2745 2.5019 -0.4554 41 1 9.6047 2.9186 0.6524 42 1 8.5796 5.1560 1.0216 43 1 9.5601 3.3884 -2.4497 44 1 7.8309 3.8124 -2.2279 45 1 8.3186 4.9903 -4.2707 46 1 9.9949 5.3704 -3.7521 47 1 7.3609 6.5534 -2.7149 48 1 8.8467 7.4211 -3.2062 49 1 7.6600 9.8000 -2.1272 50 1 6.5921 4.2045 -1.0912 51 1 6.6974 5.8608 -0.4461 52 1 4.9242 4.4697 0.6821 53 1 6.1719 5.0602 1.8100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230629467.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:29 Heat of formation + Delta-G solvation = -50.095322 kcal Electronic energy + Delta-G solvation = -30930.182235 eV Core-core repulsion = 26995.503732 eV Total energy + Delta-G solvation = -3934.678503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.58873 -40.07337 -38.91083 -37.63407 -35.12131 -34.70926 -33.87528 -32.57572 -31.42518 -31.14800 -29.10001 -27.22633 -26.55898 -25.89181 -24.44985 -24.04694 -22.45613 -21.74213 -21.10529 -20.62842 -19.57937 -18.70476 -18.35853 -17.67079 -17.20551 -16.83201 -16.50750 -16.32348 -16.18506 -15.72985 -15.62163 -15.30788 -15.07901 -14.67302 -14.37200 -14.22337 -13.99547 -13.83815 -13.78622 -13.50882 -13.35757 -13.26421 -13.03403 -12.99272 -12.79032 -12.75278 -12.59826 -12.46601 -12.15691 -11.95758 -11.87085 -11.78128 -11.75541 -11.45693 -11.28122 -11.15651 -11.12599 -10.90681 -10.60184 -10.54630 -10.26377 -9.68309 -8.69817 -7.76601 -5.10864 1.18466 1.47758 1.49323 1.50278 1.58269 1.79945 2.54647 2.84413 3.39154 3.40964 3.68612 3.75961 3.87481 3.92942 3.98458 4.08036 4.14661 4.18444 4.20463 4.24982 4.26200 4.35482 4.39585 4.42354 4.52494 4.55821 4.64432 4.64905 4.72578 4.81565 4.82016 4.90565 4.94557 4.98757 5.06943 5.07872 5.12728 5.16691 5.21924 5.28467 5.36069 5.55702 5.58734 5.65746 5.66393 5.69593 5.73137 5.76558 5.87687 6.07146 6.33907 6.36354 7.08386 7.20701 7.89864 8.57017 9.33475 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013340 B = 0.002946 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.524603 B = 9502.706914 C = 9770.436378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.176 4.176 3 C 0.080 3.920 4 O -0.382 6.382 5 C 0.071 3.929 6 H 0.105 0.895 7 C -0.170 4.170 8 C 0.513 3.487 9 O -0.573 6.573 10 N -0.600 5.600 11 C 0.114 3.886 12 C -0.115 4.115 13 C -0.083 4.083 14 C 0.158 3.842 15 H 0.026 0.974 16 C -0.115 4.115 17 C -0.140 4.140 18 C 0.179 3.821 19 N -0.607 5.607 20 C -0.218 4.218 21 H 0.073 0.927 22 C -0.059 4.059 23 N -0.945 5.945 24 Si 0.962 3.038 25 H -0.270 1.270 26 H -0.300 1.300 27 H -0.293 1.293 28 C -0.110 4.110 29 C 0.107 3.893 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.057 0.943 47 H -0.001 1.001 48 H 0.033 0.967 49 H 0.243 0.757 50 H 0.062 0.938 51 H 0.059 0.941 52 H 0.104 0.896 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.675 -13.517 2.856 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.194 4.194 3 C 0.004 3.996 4 O -0.302 6.302 5 C 0.011 3.989 6 H 0.123 0.877 7 C -0.228 4.228 8 C 0.302 3.698 9 O -0.452 6.452 10 N -0.333 5.333 11 C -0.008 4.008 12 C -0.154 4.154 13 C -0.104 4.104 14 C 0.052 3.948 15 H 0.044 0.956 16 C -0.153 4.153 17 C -0.178 4.178 18 C 0.054 3.946 19 N -0.331 5.331 20 C -0.348 4.348 21 H 0.091 0.909 22 C -0.252 4.252 23 N -0.595 5.595 24 Si 0.792 3.208 25 H -0.195 1.195 26 H -0.227 1.227 27 H -0.220 1.220 28 C -0.148 4.148 29 C -0.015 4.015 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.017 0.983 48 H 0.051 0.949 49 H 0.053 0.947 50 H 0.081 0.919 51 H 0.078 0.922 52 H 0.122 0.878 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.528 -14.048 3.199 17.844 hybrid contribution 0.325 1.477 0.285 1.539 sum -10.203 -12.570 3.484 16.561 Atomic orbital electron populations 1.24061 0.94844 1.03584 0.97531 1.22739 0.96329 0.97734 1.02595 1.21869 0.88625 0.97027 0.92068 1.88032 1.44915 1.36018 1.61194 1.21978 0.87983 0.87319 1.01662 0.87726 1.22342 1.03152 0.98902 0.98387 1.20852 0.87499 0.84140 0.77346 1.90656 1.83616 1.23164 1.47766 1.48147 1.07406 1.10211 1.67577 1.21723 0.79598 1.01358 0.98115 1.21953 1.00114 0.95464 0.97840 1.21398 0.95509 0.94866 0.98619 1.21136 0.95650 0.83996 0.94016 0.95647 1.22616 1.01927 0.96964 0.93763 1.22899 1.00673 0.96485 0.97771 1.21202 0.94441 0.94435 0.84567 1.44692 1.75993 1.00892 1.11572 1.19227 1.26405 0.87837 1.01328 0.90898 1.25452 1.00483 1.00037 0.99259 1.70131 1.42303 1.21596 1.25462 0.85244 0.76838 0.79955 0.78731 1.19453 1.22745 1.22039 1.21720 0.94747 1.01313 0.96986 1.22060 1.00720 0.80704 0.98037 0.86493 0.86996 0.87610 0.90636 0.91551 0.92356 0.89271 0.89114 0.90819 0.90039 0.91393 0.89802 0.93118 0.90048 0.90714 0.90451 0.92431 0.98315 0.94898 0.94701 0.91941 0.92224 0.87824 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 14.31 67.78 0.97 -1.11 16 2 C -0.18 -3.07 9.89 25.65 0.25 -2.82 16 3 C 0.08 1.45 6.16 71.24 0.44 1.89 16 4 O -0.38 -9.82 9.53 -130.20 -1.24 -11.06 16 5 C 0.07 1.61 2.29 29.85 0.07 1.68 16 6 H 0.11 1.93 6.94 -2.39 -0.02 1.91 16 7 C -0.17 -3.03 9.15 71.98 0.66 -2.37 16 8 C 0.51 14.80 7.05 87.65 0.62 15.42 16 9 O -0.57 -21.22 15.97 15.75 0.25 -20.97 16 10 N -0.60 -15.55 2.97 -818.06 -2.43 -17.98 16 11 C 0.11 2.91 6.45 86.51 0.56 3.47 16 12 C -0.12 -2.91 5.12 30.82 0.16 -2.75 16 13 C -0.08 -2.61 1.91 -10.76 -0.02 -2.63 16 14 C 0.16 5.76 2.95 45.34 0.13 5.89 16 15 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 16 C -0.12 -3.52 5.22 31.79 0.17 -3.35 16 17 C -0.14 -4.86 7.08 31.99 0.23 -4.63 16 18 C 0.18 8.23 5.46 86.86 0.47 8.71 16 19 N -0.61 -28.20 2.29 -668.25 -1.53 -29.73 16 20 C -0.22 -11.32 9.85 84.03 0.83 -10.49 16 21 H 0.07 3.71 7.83 -2.92 -0.02 3.69 16 22 C -0.06 -3.18 5.47 84.86 0.46 -2.71 16 23 N -0.95 -53.87 10.47 21.65 0.23 -53.65 16 24 Si 0.96 44.00 29.55 68.60 2.03 46.03 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 28 C -0.11 -3.34 4.93 30.67 0.15 -3.19 16 29 C 0.11 2.59 5.32 86.37 0.46 3.05 16 30 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 31 H 0.11 1.10 7.90 -2.91 -0.02 1.08 16 32 H 0.11 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.08 1.05 7.51 -2.39 -0.02 1.03 16 34 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.40 5.81 -2.39 -0.01 1.39 16 37 H 0.09 1.24 7.79 -2.39 -0.02 1.22 16 38 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.08 2.22 7.03 -2.39 -0.02 2.20 16 40 H 0.07 1.71 7.13 -2.39 -0.02 1.69 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 42 H 0.05 1.78 8.03 -2.39 -0.02 1.76 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.07 2.17 5.49 -2.39 -0.01 2.16 16 45 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.00 -0.06 8.11 -2.39 -0.02 -0.08 16 48 H 0.03 1.76 6.73 -2.39 -0.02 1.75 16 49 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 50 H 0.06 1.84 6.11 -2.39 -0.01 1.82 16 51 H 0.06 2.33 7.53 -2.39 -0.02 2.31 16 52 H 0.10 2.03 4.54 -2.39 -0.01 2.02 16 53 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -68.07 402.88 4.79 -63.29 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.87 Total: 20.03 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 6.61 Total: 4.04 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -3.73 Total: -101.35 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.99 Total: -32.03 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -68.07 4.79 -63.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230629467.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.190 kcal (2) G-P(sol) polarization free energy of solvation -68.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds