Wall clock time and date at job start Tue Mar 31 2020 20:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47032 * 2 1 4 4 C 1.34775 * 119.99934 * 274.59999 * 3 2 1 5 5 O 1.21352 * 120.00052 * 186.96296 * 4 3 2 6 6 C 1.49455 * 120.00040 * 6.96869 * 4 3 2 7 7 O 1.21347 * 119.99992 * 7.95904 * 6 4 3 8 8 N 1.34772 * 119.99747 * 187.96007 * 6 4 3 9 9 C 1.46923 * 120.63526 * 7.55216 * 8 6 4 10 10 C 1.52766 * 109.01037 * 233.58504 * 9 8 6 11 11 C 1.53039 * 109.37868 * 305.58918 * 10 9 8 12 12 C 1.50708 * 109.44639 * 181.25502 * 11 10 9 13 13 H 1.07999 * 119.99815 * 239.93787 * 12 11 10 14 14 C 1.37874 * 120.00000 * 59.93376 * 12 11 10 15 15 N 1.31518 * 120.00150 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99833 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47216 * 60.00159 * 16 14 12 18 18 H 1.48503 * 109.47048 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47007 * 299.99955 * 16 14 12 20 20 C 1.53032 * 109.54408 * 61.24063 * 11 10 9 21 21 C 1.46926 * 120.62822 * 187.83243 * 8 6 4 22 22 C 1.46505 * 119.99871 * 94.60218 * 3 2 1 23 23 C 1.53784 * 113.61504 * 28.32042 * 22 3 2 24 24 C 1.53779 * 87.07846 * 89.11437 * 23 22 3 25 25 C 1.53002 * 113.61319 * 139.98196 * 24 23 22 26 26 C 1.52999 * 113.61622 * 270.79827 * 24 23 22 27 27 C 1.53779 * 87.17860 * 25.39083 * 24 23 22 28 28 H 1.09000 * 109.47063 * 60.00151 * 1 2 3 29 29 H 1.08993 * 109.47119 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47047 * 300.00628 * 1 2 3 31 31 H 1.08995 * 109.47352 * 239.99708 * 2 1 3 32 32 H 1.09002 * 109.46597 * 119.99627 * 2 1 3 33 33 H 1.09001 * 109.58526 * 353.41862 * 9 8 6 34 34 H 1.08993 * 109.58580 * 113.84085 * 9 8 6 35 35 H 1.08994 * 109.56201 * 185.54853 * 10 9 8 36 36 H 1.09007 * 109.35800 * 65.49461 * 10 9 8 37 37 H 1.08997 * 109.46109 * 301.21170 * 11 10 9 38 38 H 0.96992 * 119.99815 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.50105 * 178.68326 * 20 11 10 40 40 H 1.09005 * 109.52747 * 58.59617 * 20 11 10 41 41 H 1.09001 * 109.58767 * 246.15841 * 21 8 6 42 42 H 1.09004 * 109.58672 * 6.43747 * 21 8 6 43 43 H 1.09003 * 112.84728 * 257.12216 * 22 3 2 44 44 H 1.08997 * 113.61442 * 334.56911 * 23 22 3 45 45 H 1.08998 * 113.68769 * 203.67071 * 23 22 3 46 46 H 1.08999 * 109.47212 * 181.52717 * 25 24 23 47 47 H 1.09003 * 109.47315 * 301.52615 * 25 24 23 48 48 H 1.09001 * 109.47430 * 61.52726 * 25 24 23 49 49 H 1.09004 * 109.46957 * 285.64791 * 26 24 23 50 50 H 1.08994 * 109.47159 * 45.64656 * 26 24 23 51 51 H 1.09005 * 109.47412 * 165.64676 * 26 24 23 52 52 H 1.09001 * 113.61491 * 89.15336 * 27 24 23 53 53 H 1.09003 * 113.61890 * 220.06225 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1547 2.0478 -1.1634 5 8 2.6764 3.1434 -1.1775 6 6 1.6633 1.4377 -2.4362 7 8 1.0147 0.4125 -2.4068 8 7 1.9406 2.0261 -3.6166 9 6 2.8592 3.1707 -3.6850 10 6 2.1637 4.3247 -4.4050 11 6 1.6574 3.8423 -5.7663 12 6 0.9981 4.9876 -6.4909 13 1 -0.0405 4.9181 -6.7787 14 6 1.7208 6.1239 -6.7862 15 7 2.9857 6.2084 -6.4360 16 14 0.9034 7.5437 -7.6837 17 1 -0.2403 8.0447 -6.8799 18 1 1.8881 8.6378 -7.8800 19 1 0.4127 7.0770 -9.0053 20 6 0.6426 2.7147 -5.5648 21 6 1.3252 1.5390 -4.8587 22 6 2.3585 2.0379 1.2647 23 6 2.8186 1.0626 2.3610 24 6 4.2453 1.2495 1.8187 25 6 5.3101 1.3412 2.9136 26 6 4.6149 0.2599 0.7119 27 6 3.7841 2.6187 1.2919 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.1309 3.4820 -2.6763 34 1 3.7558 2.8872 -4.2360 35 1 2.8688 5.1434 -4.5482 36 1 1.3216 4.6698 -3.8050 37 1 2.4967 3.4745 -6.3564 38 1 3.4940 7.0080 -6.6435 39 1 0.2650 2.3876 -6.5336 40 1 -0.1855 3.0746 -4.9542 41 1 2.0942 1.1197 -5.5074 42 1 0.5869 0.7721 -4.6244 43 1 1.5926 2.7388 1.5970 44 1 2.4328 0.0509 2.2354 45 1 2.6824 1.4450 3.3726 46 1 6.2874 1.4995 2.4577 47 1 5.0790 2.1751 3.5763 48 1 5.3225 0.4142 3.4869 49 1 4.7927 -0.7232 1.1481 50 1 3.7976 0.1963 -0.0064 51 1 5.5178 0.6014 0.2057 52 1 3.9120 3.4285 2.0102 53 1 4.1766 2.8614 0.3044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261368346.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:41 Heat of formation + Delta-G solvation = -33.432303 kcal Electronic energy + Delta-G solvation = -31647.578590 eV Core-core repulsion = 27713.622649 eV Total energy + Delta-G solvation = -3933.955941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.54632 -40.98156 -39.15301 -38.73519 -36.45172 -35.18778 -33.01999 -32.09598 -31.68598 -30.66441 -28.42749 -28.23191 -26.87457 -26.35222 -24.38316 -24.23510 -23.93577 -22.40374 -21.01012 -20.07869 -19.07725 -18.55457 -18.29820 -17.78451 -17.32870 -17.20608 -16.53006 -16.20358 -16.14805 -15.48806 -15.15246 -15.00531 -14.93404 -14.80169 -14.58740 -14.52504 -14.44555 -13.92706 -13.79344 -13.61970 -13.38519 -13.35259 -13.19388 -12.88009 -12.80934 -12.70868 -12.53761 -12.46345 -12.21656 -12.12297 -11.95806 -11.86477 -11.80434 -11.60933 -11.39318 -11.29032 -11.03864 -11.01618 -10.85925 -10.44692 -9.89323 -9.70309 -9.57029 -8.07989 -6.22277 0.34582 1.26019 1.41065 1.42072 1.49615 2.10216 2.34771 2.43133 3.08823 3.18170 3.48276 3.56124 3.76008 3.87674 4.02730 4.11810 4.27065 4.30453 4.33097 4.41651 4.48319 4.53210 4.53893 4.57775 4.68517 4.75799 4.78079 4.81708 4.86047 4.88625 4.92196 4.97734 5.02401 5.07945 5.11034 5.14848 5.16126 5.19161 5.22637 5.29475 5.34773 5.40926 5.47693 5.50084 5.53717 5.62385 5.70906 5.96108 5.98345 6.10070 6.29818 6.37364 6.68048 6.87828 6.96491 7.45352 8.95424 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.003084 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.267355 B = 9075.686460 C = 9945.204462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.100 3.900 3 N -0.555 5.555 4 C 0.505 3.495 5 O -0.522 6.522 6 C 0.496 3.504 7 O -0.529 6.529 8 N -0.571 5.571 9 C 0.064 3.936 10 C -0.104 4.104 11 C 0.044 3.956 12 C -0.536 4.536 13 H 0.050 0.950 14 C 0.014 3.986 15 N -0.914 5.914 16 Si 0.952 3.048 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.271 1.271 20 C -0.113 4.113 21 C 0.115 3.885 22 C 0.106 3.894 23 C -0.119 4.119 24 C -0.085 4.085 25 C -0.131 4.131 26 C -0.140 4.140 27 C -0.144 4.144 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.143 0.857 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.018 0.982 37 H 0.002 0.998 38 H 0.261 0.739 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.048 0.952 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.052 0.948 51 H 0.043 0.957 52 H 0.099 0.901 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.405 -14.636 20.542 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.020 4.020 3 N -0.287 5.287 4 C 0.289 3.711 5 O -0.401 6.401 6 C 0.279 3.721 7 O -0.408 6.408 8 N -0.303 5.303 9 C -0.057 4.057 10 C -0.143 4.143 11 C 0.025 3.975 12 C -0.574 4.574 13 H 0.068 0.932 14 C -0.185 4.185 15 N -0.553 5.553 16 Si 0.778 3.222 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.151 4.151 21 C -0.007 4.007 22 C 0.004 3.996 23 C -0.156 4.156 24 C -0.085 4.085 25 C -0.188 4.188 26 C -0.197 4.197 27 C -0.182 4.182 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.159 0.841 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.037 0.963 37 H 0.020 0.980 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.136 0.864 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.092 0.908 50 H 0.071 0.929 51 H 0.063 0.937 52 H 0.118 0.882 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.491 -14.501 20.541 25.188 hybrid contribution -0.332 1.389 -1.237 1.889 sum 1.159 -13.112 19.305 23.365 Atomic orbital electron populations 1.22095 0.95111 1.02987 1.01310 1.22076 0.95402 0.80152 1.04417 1.47676 1.61701 1.14909 1.04417 1.20213 0.79948 0.85475 0.85489 1.90370 1.43311 1.21751 1.84677 1.20156 0.81896 0.84854 0.85164 1.90658 1.40634 1.22811 1.86704 1.48176 1.43803 1.31919 1.06390 1.23027 0.90799 0.85325 1.06557 1.21584 0.99042 0.97598 0.96090 1.18638 0.93514 0.92608 0.92693 1.21531 0.97190 1.01764 1.36941 0.93153 1.25711 0.95421 1.00780 0.96566 1.69976 1.08684 1.29056 1.47573 0.85713 0.78238 0.79040 0.79255 1.20050 1.20877 1.19583 1.21855 0.98298 0.95511 0.99464 1.21800 0.97948 0.96781 0.84137 1.22226 0.97200 0.96725 0.83465 1.23437 0.94405 0.99920 0.97832 1.21807 0.95573 0.94878 0.96210 1.21683 0.97428 1.02488 0.97187 1.21792 1.01098 0.99007 0.97798 1.23479 0.94951 0.97723 1.02062 0.93916 0.90246 0.92430 0.89918 0.87147 0.84100 0.92833 0.90860 0.96307 0.97953 0.92987 0.90979 0.93929 0.90644 0.88664 0.89929 0.88945 0.86373 0.93322 0.91758 0.91321 0.90818 0.92876 0.93740 0.88235 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.62 71.98 0.69 -2.42 16 2 C 0.10 1.94 3.82 86.38 0.33 2.27 16 3 N -0.55 -13.09 1.38 -796.10 -1.10 -14.19 16 4 C 0.51 16.03 7.24 87.27 0.63 16.66 16 5 O -0.52 -19.05 11.05 -3.25 -0.04 -19.08 16 6 C 0.50 17.06 7.47 87.27 0.65 17.72 16 7 O -0.53 -17.58 10.71 -3.24 -0.03 -17.61 16 8 N -0.57 -21.47 2.98 -821.31 -2.45 -23.91 16 9 C 0.06 2.65 6.23 86.22 0.54 3.18 16 10 C -0.10 -5.17 5.14 30.53 0.16 -5.02 16 11 C 0.04 2.23 2.07 -11.51 -0.02 2.20 16 12 C -0.54 -29.99 8.56 25.60 0.22 -29.77 16 13 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 14 C 0.01 0.79 5.30 84.65 0.45 1.24 16 15 N -0.91 -53.08 11.31 21.45 0.24 -52.84 16 16 Si 0.95 44.25 29.54 68.60 2.03 46.27 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 C -0.11 -4.73 5.30 30.67 0.16 -4.57 16 21 C 0.11 4.13 6.41 86.36 0.55 4.68 16 22 C 0.11 2.07 4.34 45.58 0.20 2.26 16 23 C -0.12 -1.44 6.64 31.12 0.21 -1.23 16 24 C -0.08 -1.30 1.39 -51.66 -0.07 -1.37 16 25 C -0.13 -1.59 9.18 71.98 0.66 -0.93 16 26 C -0.14 -2.44 8.85 71.98 0.64 -1.80 16 27 C -0.14 -2.98 6.45 31.18 0.20 -2.77 16 28 H 0.04 1.14 6.13 -2.39 -0.01 1.12 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.88 6.03 -2.39 -0.01 1.87 16 32 H 0.11 1.44 5.08 -2.39 -0.01 1.43 16 33 H 0.14 5.85 3.83 -74.97 -0.29 5.56 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 4.07 6.03 -2.39 -0.01 4.06 16 36 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.10 3.14 7.06 -2.38 -0.02 3.12 16 43 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 44 H 0.09 0.92 5.48 -2.39 -0.01 0.90 16 45 H 0.12 0.97 8.10 -2.39 -0.02 0.95 16 46 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.06 0.69 7.98 -2.39 -0.02 0.67 16 48 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.05 1.07 4.24 -2.39 -0.01 1.06 16 51 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 52 H 0.10 1.80 7.99 -2.39 -0.02 1.78 16 53 H 0.06 1.62 6.14 -2.39 -0.01 1.61 16 Total: -1.00 -64.03 388.28 5.46 -58.57 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.62 Total: 22.47 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 6.19 Total: 0.32 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -3.31 Total: -90.94 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.07 Total: -36.69 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -64.03 5.46 -58.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261368346.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.137 kcal (2) G-P(sol) polarization free energy of solvation -64.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds