Wall clock time and date at job start Tue Mar 31 2020 21:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47041 * 2 1 4 4 C 1.34784 * 119.99993 * 269.99812 * 3 2 1 5 5 O 1.21275 * 119.99754 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99769 * 180.02562 * 4 3 2 7 7 H 1.08998 * 115.55022 * 306.18962 * 6 4 3 8 8 C 1.53028 * 117.49777 * 160.51174 * 6 4 3 9 9 C 1.52816 * 117.50201 * 91.88493 * 6 4 3 10 10 C 1.53185 * 117.71477 * 359.85208 * 9 6 4 11 11 C 1.53343 * 108.76860 * 158.89146 * 10 9 6 12 12 N 1.46837 * 108.81750 * 51.31046 * 11 10 9 13 13 C 1.34778 * 120.38604 * 123.07803 * 12 11 10 14 14 O 1.21277 * 120.00191 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00013 * 0.02562 * 13 12 11 16 16 C 1.50697 * 109.47312 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99893 * 0.02562 * 16 15 13 18 18 C 1.37871 * 120.00259 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99559 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46913 * 59.99677 * 20 18 16 22 22 H 1.48499 * 109.47429 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46652 * 299.99747 * 20 18 16 24 24 C 1.46846 * 119.23498 * 303.09802 * 12 11 10 25 25 C 1.53180 * 117.70880 * 215.09898 * 9 6 4 26 26 C 1.46498 * 120.00216 * 90.00329 * 3 2 1 27 27 C 1.53004 * 109.46838 * 299.99721 * 26 3 2 28 28 C 1.52998 * 109.47242 * 59.99945 * 26 3 2 29 29 H 1.08996 * 109.47403 * 59.99850 * 1 2 3 30 30 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47107 * 299.99879 * 1 2 3 32 32 H 1.09002 * 109.47394 * 119.99750 * 2 1 3 33 33 H 1.08998 * 109.47107 * 240.00121 * 2 1 3 34 34 H 1.09003 * 117.50462 * 359.97438 * 8 6 4 35 35 H 1.08999 * 117.50501 * 145.04295 * 8 6 4 36 36 H 1.09000 * 109.58757 * 278.68194 * 10 9 6 37 37 H 1.09000 * 109.58669 * 39.10506 * 10 9 6 38 38 H 1.08996 * 109.58101 * 291.50851 * 11 10 9 39 39 H 1.09003 * 109.57496 * 171.10715 * 11 10 9 40 40 H 1.08997 * 109.46974 * 300.00807 * 15 13 12 41 41 H 1.09000 * 109.46632 * 59.99898 * 15 13 12 42 42 H 0.97005 * 119.99535 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.57833 * 297.10963 * 24 12 11 44 44 H 1.08997 * 109.69386 * 176.76701 * 24 12 11 45 45 H 1.09001 * 109.59319 * 320.89431 * 25 9 6 46 46 H 1.09004 * 109.59496 * 81.18870 * 25 9 6 47 47 H 1.09006 * 109.47506 * 180.02562 * 26 3 2 48 48 H 1.09004 * 109.46928 * 60.00453 * 27 26 3 49 49 H 1.09004 * 109.47149 * 179.97438 * 27 26 3 50 50 H 1.08992 * 109.47227 * 299.99854 * 27 26 3 51 51 H 1.08997 * 109.47391 * 60.00325 * 28 26 3 52 52 H 1.09004 * 109.47287 * 180.02562 * 28 26 3 53 53 H 1.09004 * 109.46922 * 299.99720 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1673 5 8 2.0404 1.4450 -2.2175 6 6 2.7458 3.4372 -1.1672 7 1 2.1546 4.1452 -0.5864 8 6 3.4083 3.9523 -2.4469 9 6 4.2584 3.6504 -1.2120 10 6 5.1522 2.4070 -1.2502 11 6 6.5232 2.8020 -1.8122 12 7 7.0234 3.9644 -1.0674 13 6 8.2144 3.9104 -0.4389 14 8 8.6206 4.8744 0.1746 15 6 9.0414 2.6520 -0.4985 16 6 10.3164 2.8515 0.2797 17 1 10.5085 3.7950 0.7689 18 6 11.2378 1.8295 0.3672 19 7 11.0036 0.6804 -0.2281 20 14 12.8179 2.0765 1.3324 21 1 12.4904 2.3864 2.7473 22 1 13.6335 0.8370 1.2725 23 1 13.5863 3.2029 0.7440 24 6 6.2107 5.1864 -1.0149 25 6 4.8333 4.8398 -0.4366 26 6 2.2625 2.0718 1.2687 27 6 0.9615 2.1398 2.0710 28 6 3.3171 1.3070 2.0709 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.4807 3.2635 -3.2886 35 1 3.2534 4.9993 -2.7076 36 1 5.2710 2.0112 -0.2415 37 1 4.6988 1.6505 -1.8907 38 1 6.4254 3.0585 -2.8670 39 1 7.2177 1.9695 -1.6995 40 1 8.4775 1.8258 -0.0657 41 1 9.2811 2.4236 -1.5370 42 1 11.6517 -0.0387 -0.1663 43 1 6.0935 5.5905 -2.0204 44 1 6.6986 5.9249 -0.3789 45 1 4.1684 5.6976 -0.5372 46 1 4.9327 4.5760 0.6164 47 1 2.6193 3.0824 1.0695 48 1 0.6043 1.1294 2.2703 49 1 1.1432 2.6533 3.0152 50 1 0.2102 2.6847 1.4995 51 1 4.2440 1.2586 1.4994 52 1 3.4985 1.8206 3.0151 53 1 2.9599 0.2966 2.2702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024703.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:51 Heat of formation + Delta-G solvation = -75.694739 kcal Electronic energy + Delta-G solvation = -31024.966406 eV Core-core repulsion = 27089.177829 eV Total energy + Delta-G solvation = -3935.788577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.82489 -40.76595 -39.07831 -37.78702 -36.20210 -35.14921 -33.41168 -32.61475 -31.53552 -31.13453 -30.18426 -28.14552 -26.17065 -25.81560 -24.63953 -24.06514 -23.37861 -22.47727 -21.04845 -19.63542 -19.09024 -18.63810 -18.39242 -17.56103 -17.07759 -16.95232 -16.31967 -16.22561 -16.18000 -15.93599 -15.12044 -14.97082 -14.88370 -14.65949 -14.54773 -14.36125 -14.22389 -14.01095 -13.95008 -13.76401 -13.39181 -13.25431 -13.17905 -13.04495 -12.94920 -12.78503 -12.67898 -12.58195 -12.51294 -12.24920 -12.13466 -11.98548 -11.87294 -11.78766 -11.64852 -11.37949 -11.14933 -10.92828 -10.65822 -10.62836 -10.44673 -9.71130 -9.49643 -8.25235 -6.33050 1.39616 1.42556 1.50620 1.51237 1.85979 1.96756 2.18122 2.44097 2.72626 3.09839 3.37730 3.59712 3.72184 3.78412 3.87651 3.90475 4.07994 4.11571 4.17111 4.20828 4.28370 4.32157 4.39587 4.46064 4.50116 4.57177 4.64197 4.66038 4.75918 4.76184 4.82604 4.86548 4.89672 4.91571 4.98276 4.98497 5.01806 5.04048 5.06740 5.07766 5.17361 5.21967 5.23528 5.28763 5.39494 5.40475 5.65350 5.65822 5.79864 6.06188 6.41234 6.53384 6.80268 7.18633 7.33354 7.47146 8.86602 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.003008 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.948528 B = 9306.547425 C =10057.206427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.104 3.896 3 N -0.599 5.599 4 C 0.541 3.459 5 O -0.582 6.582 6 C -0.177 4.177 7 H 0.152 0.848 8 C -0.132 4.132 9 C -0.092 4.092 10 C -0.090 4.090 11 C 0.114 3.886 12 N -0.614 5.614 13 C 0.518 3.482 14 O -0.584 6.584 15 C 0.015 3.985 16 C -0.538 4.538 17 H 0.055 0.945 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.964 3.036 21 H -0.271 1.271 22 H -0.274 1.274 23 H -0.272 1.272 24 C 0.108 3.892 25 C -0.083 4.083 26 C 0.128 3.872 27 C -0.160 4.160 28 C -0.164 4.164 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.129 0.871 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.267 0.733 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.111 0.889 46 H 0.065 0.935 47 H 0.100 0.900 48 H 0.067 0.933 49 H 0.081 0.919 50 H 0.060 0.940 51 H 0.040 0.960 52 H 0.080 0.920 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.330 2.989 1.744 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.331 3.669 5 O -0.462 6.462 6 C -0.197 4.197 7 H 0.169 0.831 8 C -0.169 4.169 9 C -0.093 4.093 10 C -0.129 4.129 11 C -0.009 4.009 12 N -0.348 5.348 13 C 0.309 3.691 14 O -0.464 6.464 15 C -0.024 4.024 16 C -0.576 4.576 17 H 0.073 0.927 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.196 1.196 22 H -0.199 1.199 23 H -0.198 1.198 24 C -0.013 4.013 25 C -0.121 4.121 26 C 0.025 3.975 27 C -0.218 4.218 28 C -0.222 4.222 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.147 0.853 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.129 0.871 46 H 0.084 0.916 47 H 0.118 0.882 48 H 0.086 0.914 49 H 0.100 0.900 50 H 0.079 0.921 51 H 0.059 0.941 52 H 0.099 0.901 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -25.160 3.002 1.503 25.383 hybrid contribution 1.009 -0.487 0.247 1.148 sum -24.150 2.515 1.750 24.344 Atomic orbital electron populations 1.22219 0.94824 1.02918 1.02145 1.21453 0.95219 0.82289 1.02839 1.48131 1.64695 1.14178 1.06049 1.20086 0.76037 0.87813 0.82988 1.90665 1.54182 1.68700 1.32669 1.22396 0.96646 0.94686 1.06012 0.83053 1.23183 0.99683 1.03272 0.90734 1.21367 0.88778 0.97111 1.02056 1.21442 0.94196 0.95915 1.01315 1.21691 0.95233 0.88086 0.95857 1.48180 1.18793 1.15406 1.52385 1.21453 0.81033 0.90183 0.76423 1.90487 1.71800 1.39581 1.44505 1.19009 0.94318 0.90966 0.98155 1.21361 1.03650 0.99823 1.32785 0.92657 1.25794 1.01778 0.94617 0.96594 1.70035 1.37399 1.04335 1.44619 0.85523 0.78801 0.77686 0.79172 1.19580 1.19904 1.19766 1.21642 0.90908 0.86613 1.02177 1.21511 0.95253 0.96634 0.98693 1.21356 0.96442 0.96996 0.82692 1.22256 0.95967 1.03116 1.00414 1.22184 0.98045 1.01405 1.00597 0.94381 0.90596 0.90581 0.88858 0.92264 0.89271 0.85266 0.92042 0.91276 0.89941 0.90588 0.94566 0.94663 0.92410 0.89932 0.90791 0.87118 0.91650 0.88198 0.91432 0.89977 0.92139 0.94071 0.90106 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.96 71.98 0.72 -1.65 16 2 C 0.10 1.83 5.55 86.38 0.48 2.31 16 3 N -0.60 -11.06 2.40 -797.83 -1.91 -12.97 16 4 C 0.54 12.45 5.99 87.66 0.53 12.97 16 5 O -0.58 -17.99 15.99 -3.01 -0.05 -18.03 16 6 C -0.18 -3.10 4.09 -11.59 -0.05 -3.15 16 7 H 0.15 1.82 7.64 -2.39 -0.02 1.81 16 8 C -0.13 -2.34 9.45 30.58 0.29 -2.05 16 9 C -0.09 -1.82 1.94 -52.14 -0.10 -1.93 16 10 C -0.09 -2.33 5.24 30.77 0.16 -2.17 16 11 C 0.11 3.45 6.35 86.43 0.55 3.99 16 12 N -0.61 -21.40 2.92 -818.72 -2.39 -23.79 16 13 C 0.52 24.31 7.68 87.66 0.67 24.98 16 14 O -0.58 -31.07 14.84 -3.02 -0.04 -31.11 16 15 C 0.01 0.79 3.79 29.10 0.11 0.90 16 16 C -0.54 -32.18 8.92 25.60 0.23 -31.95 16 17 H 0.06 3.46 6.75 -2.91 -0.02 3.44 16 18 C 0.01 0.63 5.46 84.65 0.46 1.09 16 19 N -0.92 -54.64 13.29 21.45 0.28 -54.35 16 20 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 24 C 0.11 2.91 6.43 86.43 0.56 3.46 16 25 C -0.08 -1.59 5.83 30.78 0.18 -1.41 16 26 C 0.13 1.78 3.17 44.99 0.14 1.92 16 27 C -0.16 -1.54 8.14 71.98 0.59 -0.95 16 28 C -0.16 -2.55 9.17 71.98 0.66 -1.89 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.88 5.44 -2.39 -0.01 0.86 16 32 H 0.09 1.31 6.43 -2.39 -0.02 1.30 16 33 H 0.06 1.33 7.42 -2.39 -0.02 1.31 16 34 H 0.09 1.95 7.81 -2.39 -0.02 1.93 16 35 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.72 7.23 -2.39 -0.02 1.71 16 37 H 0.07 1.87 7.33 -2.39 -0.02 1.86 16 38 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.08 2.65 5.86 -2.39 -0.01 2.63 16 40 H 0.04 1.95 7.74 -2.39 -0.02 1.94 16 41 H 0.04 1.91 7.87 -2.39 -0.02 1.89 16 42 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 2.30 6.97 -2.39 -0.02 2.28 16 45 H 0.11 1.37 8.10 -2.39 -0.02 1.35 16 46 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.10 1.32 5.89 -2.38 -0.01 1.31 16 48 H 0.07 0.62 6.17 -2.38 -0.01 0.60 16 49 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.04 0.85 7.23 -2.39 -0.02 0.83 16 52 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 53 H 0.06 0.92 6.66 -2.38 -0.02 0.91 16 Total: -1.00 -75.70 407.60 4.97 -70.72 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.89 Total: 17.45 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 6.17 Total: 4.48 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -4.02 Total: -91.12 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.09 Total: -49.15 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.70 4.97 -70.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024703.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.973 kcal (2) G-P(sol) polarization free energy of solvation -75.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds