Wall clock time and date at job start Tue Mar 31 2020 21:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47311 * 2 1 4 4 C 1.34774 * 119.99906 * 89.99590 * 3 2 1 5 5 O 1.21278 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00120 * 179.97438 * 4 3 2 7 7 H 1.09004 * 115.56816 * 325.68831 * 6 4 3 8 8 C 1.53037 * 117.50098 * 111.39535 * 6 4 3 9 9 C 1.52842 * 59.98603 * 107.49419 * 8 6 4 10 10 C 1.53179 * 117.65923 * 252.26592 * 9 8 6 11 11 C 1.53343 * 108.77228 * 269.98212 * 10 9 8 12 12 N 1.46839 * 108.81588 * 308.69141 * 11 10 9 13 13 C 1.34781 * 120.38678 * 236.92252 * 12 11 10 14 14 O 1.21279 * 120.00465 * 179.97438 * 13 12 11 15 15 C 1.50706 * 119.99643 * 359.97438 * 13 12 11 16 16 C 1.50698 * 109.47073 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99878 * 359.97438 * 16 15 13 18 18 C 1.37880 * 120.00376 * 180.02562 * 16 15 13 19 19 N 1.31514 * 119.99203 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00268 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47283 * 89.99874 * 20 18 16 22 22 H 1.48505 * 109.46588 * 209.99705 * 20 18 16 23 23 H 1.48496 * 109.46985 * 329.99309 * 20 18 16 24 24 C 1.46847 * 119.23590 * 56.89579 * 12 11 10 25 25 C 1.53187 * 117.65413 * 107.69799 * 9 8 6 26 26 C 1.46505 * 120.00336 * 270.00257 * 3 2 1 27 27 C 1.53001 * 109.46611 * 300.00194 * 26 3 2 28 28 C 1.53002 * 109.46964 * 59.99512 * 26 3 2 29 29 H 1.08996 * 109.46936 * 300.00171 * 1 2 3 30 30 H 1.09007 * 109.47204 * 59.99727 * 1 2 3 31 31 H 1.09005 * 109.47254 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46691 * 239.99862 * 2 1 3 33 33 H 1.08993 * 109.47158 * 120.00424 * 2 1 3 34 34 H 1.09002 * 117.50526 * 0.02562 * 8 6 4 35 35 H 1.09002 * 117.50396 * 214.98749 * 8 6 4 36 36 H 1.09000 * 109.58451 * 29.77190 * 10 9 8 37 37 H 1.09007 * 109.58681 * 150.18987 * 10 9 8 38 38 H 1.09001 * 109.57891 * 188.89502 * 11 10 9 39 39 H 1.08998 * 109.69239 * 68.55969 * 11 10 9 40 40 H 1.08991 * 109.47351 * 300.00183 * 15 13 12 41 41 H 1.08997 * 109.46826 * 60.00387 * 15 13 12 42 42 H 0.97007 * 119.99756 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.58457 * 183.29379 * 24 12 11 44 44 H 1.09010 * 109.68398 * 62.96367 * 24 12 11 45 45 H 1.09000 * 109.58738 * 209.80070 * 25 9 8 46 46 H 1.08999 * 109.58670 * 330.23262 * 25 9 8 47 47 H 1.08996 * 109.47509 * 179.97438 * 26 3 2 48 48 H 1.08996 * 109.47470 * 59.99626 * 27 26 3 49 49 H 1.08998 * 109.46816 * 179.97438 * 27 26 3 50 50 H 1.09002 * 109.46838 * 299.99437 * 27 26 3 51 51 H 1.09000 * 109.47029 * 60.00282 * 28 26 3 52 52 H 1.08998 * 109.46940 * 180.02562 * 28 26 3 53 53 H 1.08996 * 109.47280 * 300.00473 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.0412 1.4446 2.2175 6 6 2.7459 3.4371 1.1672 7 1 3.4256 3.6956 0.3552 8 6 1.7902 4.5251 1.6621 9 6 2.9804 4.1035 2.5233 10 6 2.6910 3.2799 3.7820 11 6 2.4731 4.2379 4.9593 12 7 3.5984 5.1794 5.0184 13 6 4.3407 5.2852 6.1384 14 8 5.2689 6.0647 6.1794 15 6 4.0173 4.4348 7.3398 16 6 4.9894 4.7425 8.4495 17 1 5.7643 5.4798 8.2995 18 6 4.8904 4.0820 9.6557 19 7 3.9472 3.1839 9.8380 20 14 6.0950 4.4640 11.0314 21 1 5.5547 5.5628 11.8715 22 1 6.2918 3.2525 11.8674 23 1 7.3959 4.8800 10.4488 24 6 3.9062 6.0039 3.8429 25 6 4.1533 5.0816 2.6429 26 6 2.2626 2.0719 -1.2687 27 6 3.3171 1.3069 -2.0710 28 6 0.9615 2.1398 -2.0710 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.7978 4.2133 1.9880 35 1 1.8408 5.4991 1.1753 36 1 1.7940 2.6802 3.6280 37 1 3.5377 2.6269 3.9940 38 1 2.4231 3.6697 5.8882 39 1 1.5432 4.7886 4.8175 40 1 3.0028 4.6501 7.6750 41 1 4.0952 3.3814 7.0708 42 1 3.8772 2.7194 10.6868 43 1 4.7991 6.5980 4.0370 44 1 3.0668 6.6655 3.6285 45 1 5.0787 4.5258 2.7937 46 1 4.2265 5.6774 1.7331 47 1 2.6194 3.0824 -1.0696 48 1 2.9599 0.2966 -2.2702 49 1 3.4985 1.8205 -3.0152 50 1 4.2440 1.2585 -1.4994 51 1 0.2102 2.6847 -1.4994 52 1 1.1433 2.6533 -3.0151 53 1 0.6043 1.1295 -2.2702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024705.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:55 Heat of formation + Delta-G solvation = -68.414495 kcal Electronic energy + Delta-G solvation = -30407.860189 eV Core-core repulsion = 26472.387307 eV Total energy + Delta-G solvation = -3935.472882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.80992 -40.76435 -39.12223 -37.66572 -36.19154 -35.16786 -33.39818 -32.55314 -31.73542 -30.96592 -30.13541 -28.08792 -26.20080 -25.72193 -24.57901 -24.04274 -23.39783 -22.54159 -21.02608 -19.64524 -19.02338 -18.63460 -18.48726 -17.56071 -16.96705 -16.85646 -16.42441 -16.26354 -16.16778 -15.62282 -15.15189 -14.95472 -14.89979 -14.67415 -14.49781 -14.33483 -14.26526 -14.01007 -13.93952 -13.70426 -13.43948 -13.21505 -13.11309 -13.06143 -12.97784 -12.75845 -12.62948 -12.58293 -12.56190 -12.20136 -12.11795 -12.00271 -11.83618 -11.76417 -11.59868 -11.35049 -11.04758 -10.80167 -10.65062 -10.49638 -10.41798 -9.67292 -9.44005 -8.26791 -6.35276 1.37385 1.39514 1.50712 1.52106 1.83577 1.98911 2.20238 2.43312 2.82245 3.07664 3.42347 3.59744 3.76306 3.85292 3.90595 3.98626 4.13111 4.15328 4.20663 4.23070 4.29902 4.35351 4.42773 4.50532 4.52547 4.59707 4.67038 4.69510 4.79188 4.80737 4.86856 4.89542 4.89704 4.97596 4.99222 5.00835 5.04628 5.07909 5.09285 5.16240 5.20969 5.22378 5.34096 5.37863 5.39800 5.43557 5.65283 5.71418 5.81001 6.04936 6.45565 6.53139 6.78479 7.26118 7.31152 7.45588 8.85651 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.002457 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.831020 B =11391.341693 C =12166.251646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.533 3.467 5 O -0.573 6.573 6 C -0.180 4.180 7 H 0.150 0.850 8 C -0.115 4.115 9 C -0.103 4.103 10 C -0.085 4.085 11 C 0.109 3.891 12 N -0.615 5.615 13 C 0.515 3.485 14 O -0.586 6.586 15 C 0.015 3.985 16 C -0.538 4.538 17 H 0.056 0.944 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.968 3.032 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.274 1.274 24 C 0.109 3.891 25 C -0.084 4.084 26 C 0.121 3.879 27 C -0.163 4.163 28 C -0.160 4.160 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.033 0.967 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.037 0.963 41 H 0.031 0.969 42 H 0.268 0.732 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.048 0.952 46 H 0.115 0.885 47 H 0.106 0.894 48 H 0.061 0.939 49 H 0.088 0.912 50 H 0.048 0.952 51 H 0.053 0.947 52 H 0.085 0.915 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.514 -2.586 -32.433 33.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.015 4.015 3 N -0.333 5.333 4 C 0.323 3.677 5 O -0.453 6.453 6 C -0.201 4.201 7 H 0.168 0.832 8 C -0.152 4.152 9 C -0.104 4.104 10 C -0.123 4.123 11 C -0.013 4.013 12 N -0.349 5.349 13 C 0.306 3.694 14 O -0.466 6.466 15 C -0.025 4.025 16 C -0.577 4.577 17 H 0.074 0.926 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.793 3.207 21 H -0.193 1.193 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.013 4.013 25 C -0.122 4.122 26 C 0.019 3.981 27 C -0.221 4.221 28 C -0.218 4.218 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.156 0.844 36 H 0.116 0.884 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.067 0.933 46 H 0.133 0.867 47 H 0.124 0.876 48 H 0.080 0.920 49 H 0.107 0.893 50 H 0.067 0.933 51 H 0.073 0.927 52 H 0.104 0.896 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.217 -2.623 -31.773 33.187 hybrid contribution 0.606 -0.459 1.259 1.471 sum -8.611 -3.082 -30.514 31.855 Atomic orbital electron populations 1.22233 0.95275 1.02748 1.02041 1.21412 0.94901 0.82425 1.02802 1.48176 1.64915 1.14137 1.06055 1.20208 0.76411 0.87940 0.83161 1.90667 1.53958 1.68476 1.32171 1.22430 1.06439 0.90927 1.00309 0.83226 1.23183 0.93876 0.98128 1.00057 1.21333 0.99091 0.99716 0.90222 1.21589 1.02739 0.95682 0.92245 1.21869 0.88631 0.91108 0.99705 1.48250 1.32049 1.41395 1.13239 1.21474 0.80699 0.82339 0.84862 1.90471 1.31845 1.40548 1.83767 1.19003 0.98045 0.94694 0.90709 1.21397 1.15124 1.22921 0.98213 0.92619 1.25872 0.97692 0.94544 1.01003 1.70057 1.34133 1.26375 1.25972 0.85398 0.78905 0.78124 0.78321 1.19339 1.19758 1.19838 1.21650 1.02100 0.93337 0.84166 1.21490 0.95738 0.96221 0.98743 1.21502 0.96714 0.97378 0.82491 1.22179 0.97921 1.01260 1.00724 1.22249 0.96216 1.02864 1.00492 0.94774 0.90477 0.90825 0.88341 0.92632 0.88734 0.84426 0.88391 0.94786 0.91340 0.89502 0.94502 0.95146 0.92358 0.91127 0.89227 0.93295 0.86727 0.87576 0.91993 0.89342 0.93326 0.92739 0.89620 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.96 71.98 0.72 -1.57 16 2 C 0.11 1.65 5.55 86.38 0.48 2.13 16 3 N -0.60 -9.44 2.40 -797.83 -1.91 -11.36 16 4 C 0.53 11.86 7.44 87.66 0.65 12.51 16 5 O -0.57 -18.02 12.63 -3.02 -0.04 -18.06 16 6 C -0.18 -3.06 4.74 -11.56 -0.05 -3.12 16 7 H 0.15 1.67 6.64 -2.38 -0.02 1.65 16 8 C -0.12 -1.70 9.64 30.55 0.29 -1.41 16 9 C -0.10 -2.30 1.94 -52.14 -0.10 -2.40 16 10 C -0.08 -2.63 4.46 30.77 0.14 -2.49 16 11 C 0.11 3.71 6.35 86.43 0.55 4.26 16 12 N -0.62 -23.71 2.92 -818.71 -2.39 -26.10 16 13 C 0.52 26.10 7.68 87.66 0.67 26.77 16 14 O -0.59 -33.11 14.84 -3.03 -0.04 -33.16 16 15 C 0.01 0.84 3.79 29.10 0.11 0.95 16 16 C -0.54 -33.78 8.92 25.60 0.23 -33.55 16 17 H 0.06 3.64 6.75 -2.91 -0.02 3.62 16 18 C 0.01 0.44 5.46 84.66 0.46 0.90 16 19 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 20 Si 0.97 47.37 29.54 68.60 2.03 49.39 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 24 C 0.11 3.21 6.44 86.43 0.56 3.77 16 25 C -0.08 -1.90 5.83 30.77 0.18 -1.72 16 26 C 0.12 1.04 3.16 44.99 0.14 1.18 16 27 C -0.16 -1.13 9.17 71.98 0.66 -0.47 16 28 C -0.16 -0.95 8.14 71.98 0.59 -0.36 16 29 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.81 5.44 -2.38 -0.01 0.80 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.10 1.02 6.43 -2.38 -0.02 1.01 16 33 H 0.06 1.18 7.42 -2.39 -0.02 1.16 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 3.15 5.70 -2.39 -0.01 3.13 16 37 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.07 2.69 5.86 -2.39 -0.01 2.68 16 39 H 0.09 2.46 8.14 -2.39 -0.02 2.45 16 40 H 0.04 2.11 7.87 -2.39 -0.02 2.09 16 41 H 0.03 1.79 7.74 -2.39 -0.02 1.78 16 42 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 43 H 0.07 2.39 6.96 -2.39 -0.02 2.37 16 44 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 45 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.11 1.61 8.10 -2.39 -0.02 1.60 16 47 H 0.11 0.71 5.43 -2.39 -0.01 0.69 16 48 H 0.06 0.42 6.66 -2.39 -0.02 0.40 16 49 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 50 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 52 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 53 H 0.06 0.38 6.17 -2.39 -0.01 0.37 16 Total: -1.00 -81.60 404.81 5.09 -76.51 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.89 Total: 14.17 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.27 Total: 5.39 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -4.02 Total: -94.25 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -0.08 Total: -51.22 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -81.60 5.09 -76.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024705.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.097 kcal (2) G-P(sol) polarization free energy of solvation -81.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds