Wall clock time and date at job start Tue Mar 31 2020 20:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99702 * 2 1 4 4 C 1.53001 * 109.47052 * 124.99875 * 3 2 1 5 5 O 1.42899 * 109.47073 * 179.97438 * 4 3 2 6 6 C 1.42900 * 113.99875 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47588 * 329.99914 * 6 5 4 8 8 C 1.53004 * 109.47174 * 90.00389 * 6 5 4 9 9 C 1.50709 * 109.47005 * 210.00113 * 6 5 4 10 10 O 1.21277 * 120.00092 * 349.74653 * 9 6 5 11 11 N 1.34775 * 119.99920 * 169.74354 * 9 6 5 12 12 C 1.48164 * 127.02340 * 4.87282 * 11 9 6 13 13 C 1.55039 * 103.31007 * 140.98469 * 12 11 9 14 14 C 1.54176 * 102.72650 * 37.01559 * 13 12 11 15 15 C 1.47608 * 127.02258 * 184.87114 * 11 9 6 16 16 C 1.52494 * 110.01902 * 219.30676 * 14 13 12 17 17 C 1.53131 * 109.58810 * 298.36565 * 16 14 13 18 18 C 1.53186 * 109.29397 * 299.51345 * 17 16 14 19 19 N 1.46930 * 108.88718 * 55.07487 * 18 17 16 20 20 C 1.36937 * 120.68420 * 125.94443 * 19 18 17 21 21 H 1.08000 * 119.99829 * 326.71077 * 20 19 18 22 22 C 1.38812 * 120.00160 * 146.70443 * 20 19 18 23 23 N 1.31622 * 120.00024 * 342.83430 * 22 20 19 24 24 Si 1.86791 * 119.99998 * 162.83937 * 22 20 19 25 25 H 1.48497 * 109.47805 * 59.99677 * 24 22 20 26 26 H 1.48503 * 109.47197 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47059 * 299.99767 * 24 22 20 28 28 C 1.47032 * 118.63631 * 305.96881 * 19 18 17 29 29 H 1.08000 * 119.99390 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99949 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99949 * 180.02562 * 2 1 3 32 32 H 1.08990 * 109.47529 * 4.99913 * 3 2 1 33 33 H 1.09003 * 109.47156 * 244.99511 * 3 2 1 34 34 H 1.09007 * 109.47215 * 59.99821 * 4 3 2 35 35 H 1.08997 * 109.47217 * 299.99686 * 4 3 2 36 36 H 1.09001 * 109.47059 * 51.60423 * 8 6 5 37 37 H 1.09005 * 109.47225 * 171.60818 * 8 6 5 38 38 H 1.08996 * 109.46762 * 291.60511 * 8 6 5 39 39 H 1.09006 * 110.65030 * 259.44406 * 12 11 9 40 40 H 1.09002 * 110.65047 * 22.36388 * 12 11 9 41 41 H 1.08993 * 110.76412 * 278.69845 * 13 12 11 42 42 H 1.09007 * 110.75447 * 155.32209 * 13 12 11 43 43 H 1.09000 * 109.97292 * 85.96907 * 15 11 9 44 44 H 1.08996 * 109.97342 * 324.69448 * 15 11 9 45 45 H 1.09001 * 109.44536 * 178.34145 * 16 14 13 46 46 H 1.08998 * 109.44982 * 58.39422 * 16 14 13 47 47 H 1.08997 * 109.49804 * 59.46145 * 17 16 14 48 48 H 1.09003 * 109.49877 * 179.56701 * 17 16 14 49 49 H 1.08999 * 109.56704 * 174.89433 * 18 17 16 50 50 H 1.08995 * 109.57025 * 295.25183 * 18 17 16 51 51 H 0.96995 * 120.00248 * 180.02562 * 23 22 20 52 52 H 1.09000 * 109.58101 * 172.58289 * 28 19 18 53 53 H 1.08996 * 109.58130 * 292.99251 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 8 3.7498 2.5705 1.1813 6 6 4.6893 2.6992 2.2503 7 1 4.3371 2.1347 3.1137 8 6 6.0475 2.1541 1.8041 9 6 4.8295 4.1526 2.6237 10 8 4.3378 5.0095 1.9203 11 7 5.5012 4.5001 3.7392 12 6 6.2436 3.5984 4.6509 13 6 7.4991 4.4264 5.0274 14 6 6.9427 5.8608 5.1271 15 6 5.6475 5.8566 4.3024 16 6 7.9432 6.8508 4.5403 17 6 9.2476 6.7978 5.3407 18 6 8.9632 7.1765 6.7975 19 7 7.9092 6.2966 7.3206 20 6 8.1044 5.5795 8.4707 21 1 9.0887 5.2082 8.7150 22 6 7.0373 5.3299 9.3227 23 7 5.9348 6.0419 9.2226 24 14 7.1660 3.9837 10.6111 25 1 8.2949 4.2824 11.5284 26 1 5.9013 3.9184 11.3868 27 1 7.4036 2.6793 9.9422 28 6 6.6405 6.2015 6.5834 29 1 -0.5399 -0.9354 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5066 1.0921 35 1 2.4772 1.2357 2.1130 36 1 6.3306 2.6143 0.8575 37 1 6.7982 2.3860 2.5597 38 1 5.9814 1.0735 1.6774 39 1 5.6504 3.3748 5.5376 40 1 6.5258 2.6795 4.1369 41 1 8.2554 4.3587 4.2454 42 1 7.9031 4.1011 5.9862 43 1 4.7970 6.0871 4.9441 44 1 5.7162 6.5884 3.4976 45 1 7.5284 7.8576 4.5887 46 1 8.1443 6.5906 3.5011 47 1 9.6584 5.7890 5.3004 48 1 9.9643 7.5004 4.9153 49 1 9.8695 7.0529 7.3904 50 1 8.6311 8.2134 6.8470 51 1 5.1893 5.8678 9.8181 52 1 6.0216 5.4183 7.0211 53 1 6.1161 7.1556 6.6343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269687287.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:13 Heat of formation + Delta-G solvation = -42.306325 kcal Electronic energy + Delta-G solvation = -30492.499047 eV Core-core repulsion = 26558.158300 eV Total energy + Delta-G solvation = -3934.340747 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.32916 -38.92956 -37.65531 -35.74653 -35.33710 -33.19972 -32.15649 -30.83278 -30.04313 -29.33425 -29.05357 -25.99102 -25.35310 -24.14842 -23.15199 -22.58223 -22.22134 -20.68075 -20.17679 -19.23123 -18.10872 -17.27598 -16.71284 -16.37672 -16.24770 -15.85117 -15.37678 -14.92164 -14.74216 -14.47245 -14.07298 -13.89992 -13.84550 -13.45816 -13.41587 -13.06386 -12.92440 -12.84560 -12.70202 -12.37762 -12.09779 -11.95115 -11.89452 -11.67725 -11.55868 -11.42551 -11.24221 -11.14808 -10.97833 -10.95996 -10.71278 -10.45125 -10.19167 -10.10621 -9.99723 -9.84314 -9.72609 -9.66336 -9.39156 -9.35318 -8.52475 -8.43779 -6.63980 -5.85175 -3.31772 1.88279 2.72576 2.79118 3.32525 3.39567 3.39801 3.71436 4.43097 4.44434 4.61883 4.71454 4.76132 4.81634 4.91313 4.97506 5.03159 5.07089 5.13233 5.21136 5.30321 5.40591 5.46034 5.51709 5.55093 5.59329 5.63149 5.64811 5.66056 5.74594 5.80396 5.95981 6.02340 6.04762 6.15527 6.22587 6.26713 6.30145 6.34264 6.39778 6.44109 6.50393 6.62577 6.76537 6.83554 6.89591 6.95986 7.00451 7.24182 7.49182 7.72867 7.76338 8.31844 8.42290 9.15787 9.78161 10.39852 11.23004 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.002741 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.638371 B =10212.431990 C =11389.672642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.358 6.358 6 C 0.077 3.923 7 H 0.084 0.916 8 C -0.176 4.176 9 C 0.531 3.469 10 O -0.529 6.529 11 N -0.615 5.615 12 C 0.088 3.912 13 C -0.112 4.112 14 C -0.093 4.093 15 C 0.119 3.881 16 C -0.094 4.094 17 C -0.133 4.133 18 C 0.144 3.856 19 N -0.586 5.586 20 C -0.258 4.258 21 H 0.062 0.938 22 C 0.010 3.990 23 N -0.897 5.897 24 Si 0.898 3.102 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.192 3.808 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.046 0.954 47 H 0.059 0.941 48 H 0.049 0.951 49 H 0.052 0.948 50 H 0.016 0.984 51 H 0.255 0.745 52 H 0.078 0.922 53 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 -10.729 -14.876 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.172 4.172 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.276 6.276 6 C 0.016 3.984 7 H 0.102 0.898 8 C -0.233 4.233 9 C 0.318 3.682 10 O -0.405 6.405 11 N -0.350 5.350 12 C -0.034 4.034 13 C -0.150 4.150 14 C -0.095 4.095 15 C -0.004 4.004 16 C -0.132 4.132 17 C -0.173 4.173 18 C 0.018 3.982 19 N -0.309 5.309 20 C -0.388 4.388 21 H 0.080 0.920 22 C -0.190 4.190 23 N -0.540 5.540 24 Si 0.727 3.273 25 H -0.208 1.208 26 H -0.217 1.217 27 H -0.209 1.209 28 C 0.065 3.935 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.119 0.881 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.067 0.933 49 H 0.071 0.929 50 H 0.034 0.966 51 H 0.065 0.935 52 H 0.096 0.904 53 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.079 -10.143 -15.356 18.660 hybrid contribution -0.039 -0.950 0.991 1.373 sum -3.118 -11.093 -14.366 18.416 Atomic orbital electron populations 1.23923 0.95916 1.02098 1.00506 1.22805 0.96030 0.97964 1.00447 1.20637 0.97978 0.95933 0.98446 1.22535 0.93851 0.86338 0.98581 1.88021 1.54298 1.37334 1.47988 1.21813 0.91274 0.94080 0.91246 0.89830 1.22366 0.95760 1.01653 1.03518 1.19884 0.78332 0.90293 0.79679 1.90696 1.47745 1.51670 1.50390 1.48836 1.51740 1.10383 1.24088 1.22899 0.93821 0.93509 0.93166 1.22672 0.95248 0.94298 1.02798 1.21829 0.93071 0.95296 0.99341 1.22130 0.98418 0.83197 0.96645 1.21373 0.95715 0.98566 0.97499 1.22034 0.96107 1.00942 0.98184 1.20930 0.92720 0.92994 0.91599 1.43938 1.12615 1.49138 1.25170 1.19031 0.95411 1.26868 0.97453 0.92017 1.25160 0.97794 0.98912 0.97109 1.70028 1.05641 1.38556 1.39733 0.86460 0.76930 0.82340 0.81545 1.20828 1.21689 1.20925 1.20625 0.88407 0.99615 0.84804 0.88305 0.88349 0.87189 0.90434 0.90004 0.93045 0.93048 0.90927 0.90181 0.91389 0.90458 0.90465 0.92091 0.88137 0.91250 0.91056 0.92553 0.93503 0.92254 0.93260 0.92926 0.96567 0.93523 0.90403 0.96034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 14.32 29.01 0.42 -0.90 16 2 C -0.15 -1.15 9.52 -36.03 -0.34 -1.49 16 3 C -0.09 -0.83 6.03 -27.88 -0.17 -1.00 16 4 C 0.06 0.63 5.73 37.16 0.21 0.84 16 5 O -0.36 -4.86 9.54 -54.93 -0.52 -5.39 16 6 C 0.08 0.97 2.50 -27.88 -0.07 0.90 16 7 H 0.08 0.90 7.77 -51.93 -0.40 0.50 16 8 C -0.18 -1.77 9.26 37.16 0.34 -1.43 16 9 C 0.53 8.70 7.22 -10.98 -0.08 8.62 16 10 O -0.53 -10.79 16.85 -14.14 -0.24 -11.03 16 11 N -0.62 -9.60 3.30 -169.84 -0.56 -10.16 16 12 C 0.09 1.22 6.63 -2.05 -0.01 1.20 16 13 C -0.11 -1.74 5.00 -25.04 -0.13 -1.87 16 14 C -0.09 -1.60 0.63 -154.08 -0.10 -1.70 16 15 C 0.12 2.01 6.30 -3.15 -0.02 1.99 16 16 C -0.09 -1.52 4.34 -26.92 -0.12 -1.64 16 17 C -0.13 -2.18 5.89 -26.57 -0.16 -2.34 16 18 C 0.14 2.87 6.50 -3.71 -0.02 2.84 16 19 N -0.59 -13.54 2.47 -172.60 -0.43 -13.96 16 20 C -0.26 -6.58 9.51 -15.06 -0.14 -6.72 16 21 H 0.06 1.56 7.89 -52.49 -0.41 1.15 16 22 C 0.01 0.27 4.87 -17.43 -0.08 0.18 16 23 N -0.90 -24.87 11.64 55.49 0.65 -24.23 16 24 Si 0.90 20.54 29.59 -169.99 -5.03 15.51 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.19 4.17 3.62 -3.96 -0.01 4.15 16 29 H 0.10 0.56 8.06 -52.49 -0.42 0.14 16 30 H 0.10 0.68 7.84 -52.49 -0.41 0.27 16 31 H 0.11 0.68 8.06 -52.49 -0.42 0.25 16 32 H 0.08 0.75 7.79 -51.93 -0.40 0.35 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 35 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.77 5.43 -51.93 -0.28 0.49 16 38 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 0.84 5.07 -51.93 -0.26 0.58 16 41 H 0.06 0.87 7.63 -51.93 -0.40 0.48 16 42 H 0.10 1.80 7.48 -51.92 -0.39 1.41 16 43 H 0.07 1.24 7.67 -51.93 -0.40 0.84 16 44 H 0.07 1.23 7.55 -51.93 -0.39 0.84 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.97 7.13 -51.93 -0.37 0.60 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 50 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 51 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 52 H 0.08 1.88 6.53 -51.93 -0.34 1.54 16 53 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 410.08 15.07 6.18 6.18 Total: -1.00 -30.59 410.08 -9.93 -40.52 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -9.50 Total: 0.91 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.48 Total: 1.65 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.34 Total: -48.35 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.76 Total: -16.42 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.59 -9.93 -40.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269687287.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.785 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds