Wall clock time and date at job start Tue Mar 31 2020 20:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99702 * 2 1 4 4 C 1.53001 * 109.47052 * 124.99875 * 3 2 1 5 5 O 1.42899 * 109.47073 * 179.97438 * 4 3 2 6 6 C 1.42900 * 113.99875 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47588 * 329.99914 * 6 5 4 8 8 C 1.53004 * 109.47174 * 90.00389 * 6 5 4 9 9 C 1.50709 * 109.47005 * 210.00113 * 6 5 4 10 10 O 1.21277 * 120.00092 * 349.74653 * 9 6 5 11 11 N 1.34775 * 119.99920 * 169.74354 * 9 6 5 12 12 C 1.48164 * 127.02340 * 4.87282 * 11 9 6 13 13 C 1.55039 * 103.31007 * 140.98469 * 12 11 9 14 14 C 1.54176 * 102.72650 * 37.01559 * 13 12 11 15 15 C 1.47608 * 127.02258 * 184.87114 * 11 9 6 16 16 C 1.52494 * 110.01902 * 219.30676 * 14 13 12 17 17 C 1.53131 * 109.58810 * 298.36565 * 16 14 13 18 18 C 1.53186 * 109.29397 * 299.51345 * 17 16 14 19 19 N 1.46930 * 108.88718 * 55.07487 * 18 17 16 20 20 C 1.36937 * 120.68420 * 125.94443 * 19 18 17 21 21 H 1.08000 * 119.99829 * 326.71077 * 20 19 18 22 22 C 1.38812 * 120.00160 * 146.70443 * 20 19 18 23 23 N 1.31622 * 120.00024 * 342.83430 * 22 20 19 24 24 Si 1.86791 * 119.99998 * 162.83937 * 22 20 19 25 25 H 1.48497 * 109.47805 * 59.99677 * 24 22 20 26 26 H 1.48503 * 109.47197 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47059 * 299.99767 * 24 22 20 28 28 C 1.47032 * 118.63631 * 305.96881 * 19 18 17 29 29 H 1.08000 * 119.99390 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99949 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99949 * 180.02562 * 2 1 3 32 32 H 1.08990 * 109.47529 * 4.99913 * 3 2 1 33 33 H 1.09003 * 109.47156 * 244.99511 * 3 2 1 34 34 H 1.09007 * 109.47215 * 59.99821 * 4 3 2 35 35 H 1.08997 * 109.47217 * 299.99686 * 4 3 2 36 36 H 1.09001 * 109.47059 * 51.60423 * 8 6 5 37 37 H 1.09005 * 109.47225 * 171.60818 * 8 6 5 38 38 H 1.08996 * 109.46762 * 291.60511 * 8 6 5 39 39 H 1.09006 * 110.65030 * 259.44406 * 12 11 9 40 40 H 1.09002 * 110.65047 * 22.36388 * 12 11 9 41 41 H 1.08993 * 110.76412 * 278.69845 * 13 12 11 42 42 H 1.09007 * 110.75447 * 155.32209 * 13 12 11 43 43 H 1.09000 * 109.97292 * 85.96907 * 15 11 9 44 44 H 1.08996 * 109.97342 * 324.69448 * 15 11 9 45 45 H 1.09001 * 109.44536 * 178.34145 * 16 14 13 46 46 H 1.08998 * 109.44982 * 58.39422 * 16 14 13 47 47 H 1.08997 * 109.49804 * 59.46145 * 17 16 14 48 48 H 1.09003 * 109.49877 * 179.56701 * 17 16 14 49 49 H 1.08999 * 109.56704 * 174.89433 * 18 17 16 50 50 H 1.08995 * 109.57025 * 295.25183 * 18 17 16 51 51 H 0.96995 * 120.00248 * 180.02562 * 23 22 20 52 52 H 1.09000 * 109.58101 * 172.58289 * 28 19 18 53 53 H 1.08996 * 109.58130 * 292.99251 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 8 3.7498 2.5705 1.1813 6 6 4.6893 2.6992 2.2503 7 1 4.3371 2.1347 3.1137 8 6 6.0475 2.1541 1.8041 9 6 4.8295 4.1526 2.6237 10 8 4.3378 5.0095 1.9203 11 7 5.5012 4.5001 3.7392 12 6 6.2436 3.5984 4.6509 13 6 7.4991 4.4264 5.0274 14 6 6.9427 5.8608 5.1271 15 6 5.6475 5.8566 4.3024 16 6 7.9432 6.8508 4.5403 17 6 9.2476 6.7978 5.3407 18 6 8.9632 7.1765 6.7975 19 7 7.9092 6.2966 7.3206 20 6 8.1044 5.5795 8.4707 21 1 9.0887 5.2082 8.7150 22 6 7.0373 5.3299 9.3227 23 7 5.9348 6.0419 9.2226 24 14 7.1660 3.9837 10.6111 25 1 8.2949 4.2824 11.5284 26 1 5.9013 3.9184 11.3868 27 1 7.4036 2.6793 9.9422 28 6 6.6405 6.2015 6.5834 29 1 -0.5399 -0.9354 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5066 1.0921 35 1 2.4772 1.2357 2.1130 36 1 6.3306 2.6143 0.8575 37 1 6.7982 2.3860 2.5597 38 1 5.9814 1.0735 1.6774 39 1 5.6504 3.3748 5.5376 40 1 6.5258 2.6795 4.1369 41 1 8.2554 4.3587 4.2454 42 1 7.9031 4.1011 5.9862 43 1 4.7970 6.0871 4.9441 44 1 5.7162 6.5884 3.4976 45 1 7.5284 7.8576 4.5887 46 1 8.1443 6.5906 3.5011 47 1 9.6584 5.7890 5.3004 48 1 9.9643 7.5004 4.9153 49 1 9.8695 7.0529 7.3904 50 1 8.6311 8.2134 6.8470 51 1 5.1893 5.8678 9.8181 52 1 6.0216 5.4183 7.0211 53 1 6.1161 7.1556 6.6343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269687287.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:12 Heat of formation + Delta-G solvation = -58.078302 kcal Electronic energy + Delta-G solvation = -30493.182972 eV Core-core repulsion = 26558.158300 eV Total energy + Delta-G solvation = -3935.024671 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.62355 -40.17597 -38.78150 -37.25122 -36.01589 -34.90011 -33.36491 -32.13657 -31.69185 -30.49893 -29.91683 -27.39776 -27.14143 -25.23097 -24.13171 -23.90418 -23.58236 -22.16852 -20.87671 -20.37880 -19.61553 -18.51554 -18.25419 -17.61289 -17.17879 -16.87004 -16.74191 -16.40771 -15.77658 -15.75855 -15.53978 -15.22978 -15.02168 -14.67007 -14.60387 -14.39836 -14.17088 -14.04429 -13.85548 -13.58387 -13.45256 -13.11577 -12.97504 -12.84034 -12.81869 -12.66181 -12.51890 -12.50576 -12.33000 -12.15995 -12.04968 -11.97924 -11.85510 -11.62595 -11.30502 -11.18358 -10.99722 -10.96887 -10.52792 -10.49727 -10.27598 -9.76872 -8.56043 -7.83560 -5.33230 1.31094 1.48044 1.50873 1.51652 1.58717 1.67421 2.54513 2.77732 3.28865 3.35359 3.61375 3.72241 3.83676 3.86727 3.94191 3.99574 4.01280 4.14393 4.24749 4.27049 4.29972 4.38014 4.42793 4.43691 4.46989 4.57391 4.60897 4.67109 4.74137 4.76776 4.82298 4.89344 4.92590 4.94130 5.02209 5.04143 5.09752 5.14941 5.20832 5.23027 5.28670 5.36086 5.43127 5.51135 5.61022 5.71182 5.71373 5.73836 5.84775 6.08498 6.45227 6.49414 7.04962 7.19673 7.89067 8.46199 9.22094 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.002741 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.638371 B =10212.431990 C =11389.672642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C -0.092 4.092 4 C 0.060 3.940 5 O -0.388 6.388 6 C 0.080 3.920 7 H 0.106 0.894 8 C -0.168 4.168 9 C 0.525 3.475 10 O -0.578 6.578 11 N -0.612 5.612 12 C 0.093 3.907 13 C -0.105 4.105 14 C -0.084 4.084 15 C 0.122 3.878 16 C -0.092 4.092 17 C -0.120 4.120 18 C 0.138 3.862 19 N -0.601 5.601 20 C -0.258 4.258 21 H 0.065 0.935 22 C -0.042 4.042 23 N -0.933 5.933 24 Si 0.959 3.041 25 H -0.279 1.279 26 H -0.301 1.301 27 H -0.270 1.270 28 C 0.207 3.793 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.053 0.947 50 H 0.004 0.996 51 H 0.248 0.752 52 H 0.048 0.952 53 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.887 -13.597 -16.160 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C -0.130 4.130 4 C -0.016 4.016 5 O -0.307 6.307 6 C 0.019 3.981 7 H 0.124 0.876 8 C -0.226 4.226 9 C 0.314 3.686 10 O -0.457 6.457 11 N -0.346 5.346 12 C -0.029 4.029 13 C -0.143 4.143 14 C -0.086 4.086 15 C -0.002 4.002 16 C -0.129 4.129 17 C -0.158 4.158 18 C 0.012 3.988 19 N -0.323 5.323 20 C -0.388 4.388 21 H 0.083 0.917 22 C -0.238 4.238 23 N -0.578 5.578 24 Si 0.788 3.212 25 H -0.205 1.205 26 H -0.227 1.227 27 H -0.195 1.195 28 C 0.080 3.920 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.072 0.928 50 H 0.022 0.978 51 H 0.057 0.943 52 H 0.067 0.933 53 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges -1.366 -13.034 -16.646 21.186 hybrid contribution -0.582 0.039 1.402 1.519 sum -1.949 -12.995 -15.245 20.126 Atomic orbital electron populations 1.24086 0.96049 1.02651 0.99975 1.22849 0.96117 0.97765 1.00872 1.20629 0.97686 0.96357 0.98297 1.22738 0.94297 0.85695 0.98891 1.87994 1.54930 1.39429 1.48335 1.21898 0.92894 0.91145 0.92121 0.87634 1.22348 0.93931 1.03262 1.03024 1.20764 0.77079 0.91873 0.78883 1.90668 1.49676 1.53448 1.51954 1.48872 1.51682 1.09913 1.24103 1.22976 0.92551 0.94349 0.92985 1.22580 0.96383 0.92747 1.02560 1.21589 0.93710 0.97275 0.96042 1.21939 0.97607 0.84475 0.96165 1.21370 0.95200 0.97786 0.98574 1.21892 0.96632 1.02061 0.95249 1.21088 0.91666 0.91853 0.94165 1.44174 1.13416 1.49692 1.25060 1.19334 0.95395 1.26241 0.97852 0.91713 1.25860 0.97651 1.00984 0.99290 1.70191 1.06332 1.40407 1.40911 0.85476 0.76245 0.80339 0.79184 1.20477 1.22720 1.19507 1.20314 0.87429 0.96702 0.87517 0.86748 0.88923 0.85413 0.92141 0.90100 0.90501 0.92838 0.92015 0.89403 0.88411 0.91404 0.86466 0.89687 0.90155 0.93266 0.91425 0.93332 0.91240 0.91481 0.90411 0.92816 0.97806 0.94287 0.93347 0.99691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 14.32 67.78 0.97 -1.44 16 2 C -0.16 -2.06 9.52 25.64 0.24 -1.81 16 3 C -0.09 -1.56 6.03 29.85 0.18 -1.38 16 4 C 0.06 1.05 5.73 71.98 0.41 1.46 16 5 O -0.39 -10.01 9.54 -130.15 -1.24 -11.25 16 6 C 0.08 1.84 2.50 29.85 0.07 1.92 16 7 H 0.11 1.93 7.77 -2.39 -0.02 1.92 16 8 C -0.17 -2.78 9.26 71.98 0.67 -2.11 16 9 C 0.52 16.78 7.22 87.66 0.63 17.41 16 10 O -0.58 -23.91 16.85 15.81 0.27 -23.65 16 11 N -0.61 -18.53 3.30 -809.63 -2.67 -21.20 16 12 C 0.09 2.36 6.63 86.76 0.58 2.94 16 13 C -0.10 -3.05 5.00 31.69 0.16 -2.89 16 14 C -0.08 -2.87 0.63 -51.90 -0.03 -2.90 16 15 C 0.12 4.19 6.30 86.35 0.54 4.74 16 16 C -0.09 -2.83 4.34 30.47 0.13 -2.70 16 17 C -0.12 -3.63 5.89 30.70 0.18 -3.45 16 18 C 0.14 5.43 6.50 86.36 0.56 5.99 16 19 N -0.60 -28.13 2.47 -700.00 -1.73 -29.85 16 20 C -0.26 -13.25 9.51 84.03 0.80 -12.45 16 21 H 0.07 3.24 7.89 -2.91 -0.02 3.22 16 22 C -0.04 -2.21 4.87 84.86 0.41 -1.80 16 23 N -0.93 -53.73 11.64 21.65 0.25 -53.48 16 24 Si 0.96 42.54 29.59 68.60 2.03 44.57 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 28 C 0.21 9.32 3.62 86.14 0.31 9.63 16 29 H 0.11 1.07 8.06 -2.91 -0.02 1.05 16 30 H 0.09 1.25 7.84 -2.91 -0.02 1.22 16 31 H 0.13 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.06 1.19 7.79 -2.39 -0.02 1.17 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 0.96 8.09 -2.38 -0.02 0.94 16 35 H 0.05 0.91 8.09 -2.39 -0.02 0.89 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.29 5.43 -2.38 -0.01 1.28 16 38 H 0.10 1.06 8.08 -2.39 -0.02 1.04 16 39 H 0.07 1.89 8.14 -2.38 -0.02 1.88 16 40 H 0.12 2.07 5.07 -2.39 -0.01 2.06 16 41 H 0.08 2.10 7.63 -2.39 -0.02 2.09 16 42 H 0.08 2.74 7.48 -2.38 -0.02 2.73 16 43 H 0.05 1.88 7.67 -2.39 -0.02 1.86 16 44 H 0.07 2.38 7.55 -2.39 -0.02 2.36 16 45 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.07 1.97 7.13 -2.39 -0.02 1.96 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.05 2.07 7.93 -2.39 -0.02 2.06 16 50 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 51 H 0.25 14.02 8.31 -92.71 -0.77 13.24 16 52 H 0.05 2.45 6.53 -2.39 -0.02 2.43 16 53 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 Total: -1.00 -69.45 410.08 4.59 -64.86 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.86 Total: 18.84 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 6.82 Total: 11.16 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -4.15 Total: -104.54 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.98 Total: -34.90 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -69.45 4.59 -64.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269687287.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.784 kcal (2) G-P(sol) polarization free energy of solvation -69.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds