Wall clock time and date at job start Tue Mar 31 2020 20:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00214 * 2 1 4 4 C 1.53006 * 109.46929 * 124.99784 * 3 2 1 5 5 O 1.42902 * 109.46699 * 180.02562 * 4 3 2 6 6 C 1.42906 * 113.99771 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.46551 * 30.00601 * 6 5 4 8 8 C 1.52991 * 109.47574 * 270.00455 * 6 5 4 9 9 C 1.50700 * 109.46689 * 149.99975 * 6 5 4 10 10 O 1.21277 * 120.00501 * 8.64694 * 9 6 5 11 11 N 1.34781 * 119.99751 * 188.63619 * 9 6 5 12 12 C 1.47085 * 125.62595 * 175.24338 * 11 9 6 13 13 C 1.54472 * 107.30308 * 180.72135 * 12 11 9 14 14 C 1.54354 * 102.85583 * 21.47537 * 13 12 11 15 15 C 1.47580 * 125.62740 * 354.93969 * 11 9 6 16 16 C 1.52063 * 110.61055 * 83.54054 * 14 13 12 17 17 C 1.53194 * 109.67843 * 64.18938 * 16 14 13 18 18 C 1.53192 * 109.28006 * 59.96048 * 17 16 14 19 19 N 1.46941 * 108.92382 * 304.68164 * 18 17 16 20 20 C 1.36937 * 120.70992 * 234.27279 * 19 18 17 21 21 H 1.07996 * 119.99619 * 27.64138 * 20 19 18 22 22 C 1.38813 * 120.00115 * 207.62824 * 20 19 18 23 23 N 1.31614 * 119.99972 * 16.75923 * 22 20 19 24 24 Si 1.86799 * 119.99887 * 196.74919 * 22 20 19 25 25 H 1.48503 * 109.47089 * 90.00359 * 24 22 20 26 26 H 1.48489 * 109.47354 * 210.00467 * 24 22 20 27 27 H 1.48499 * 109.47400 * 330.00809 * 24 22 20 28 28 C 1.47109 * 118.57831 * 54.25918 * 19 18 17 29 29 H 1.08000 * 120.00112 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99823 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00112 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47060 * 5.00477 * 3 2 1 33 33 H 1.08995 * 109.47308 * 245.00254 * 3 2 1 34 34 H 1.08990 * 109.46776 * 60.00539 * 4 3 2 35 35 H 1.09006 * 109.47091 * 300.00059 * 4 3 2 36 36 H 1.08999 * 109.47227 * 303.21915 * 8 6 5 37 37 H 1.09002 * 109.47295 * 63.21272 * 8 6 5 38 38 H 1.09004 * 109.47138 * 183.21512 * 8 6 5 39 39 H 1.09000 * 109.87799 * 300.14423 * 12 11 9 40 40 H 1.08996 * 109.87463 * 61.14310 * 12 11 9 41 41 H 1.08999 * 110.73865 * 139.81855 * 13 12 11 42 42 H 1.09000 * 110.73306 * 263.13485 * 13 12 11 43 43 H 1.08996 * 110.37874 * 275.80866 * 15 11 9 44 44 H 1.08999 * 110.37446 * 38.15745 * 15 11 9 45 45 H 1.08998 * 109.44018 * 184.25176 * 16 14 13 46 46 H 1.08999 * 109.44096 * 304.16696 * 16 14 13 47 47 H 1.08998 * 109.50330 * 179.90449 * 17 16 14 48 48 H 1.08998 * 109.50105 * 299.97799 * 17 16 14 49 49 H 1.09001 * 109.56154 * 64.50808 * 18 17 16 50 50 H 1.08993 * 109.56259 * 184.73527 * 18 17 16 51 51 H 0.96998 * 120.00028 * 179.97438 * 23 22 20 52 52 H 1.09005 * 109.57543 * 187.93433 * 28 19 18 53 53 H 1.09003 * 109.57335 * 67.55082 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 8 3.7492 2.5708 1.1820 6 6 4.6878 2.7000 2.2518 7 1 5.0646 1.7144 2.5255 8 6 3.9990 3.3365 3.4606 9 6 5.8352 3.5718 1.8107 10 8 5.7761 4.1630 0.7534 11 7 6.9270 3.6946 2.5913 12 6 8.1527 4.4282 2.2408 13 6 9.1318 4.2802 3.4264 14 6 8.6113 3.0176 4.1459 15 6 7.0876 3.1205 3.9414 16 6 9.1604 1.7617 3.4875 17 6 10.6836 1.7203 3.6452 18 6 11.0379 1.7129 5.1356 19 7 10.4101 2.8745 5.7804 20 6 11.1593 3.7600 6.5083 21 1 12.2045 3.9013 6.2763 22 6 10.5752 4.4760 7.5441 23 7 9.4227 4.0858 8.0459 24 14 11.4250 5.9933 8.2261 25 1 10.9747 7.1926 7.4749 26 1 11.0805 6.1504 9.6619 27 1 12.8955 5.8433 8.0834 28 6 8.9596 3.0659 5.6270 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4026 -0.9313 34 1 3.7399 0.5065 1.0921 35 1 2.4772 1.2355 2.1131 36 1 3.5724 4.2970 3.1717 37 1 3.2055 2.6784 3.8149 38 1 4.7283 3.4874 4.2566 39 1 8.5947 4.0024 1.3399 40 1 7.9209 5.4807 2.0778 41 1 10.1504 4.1286 3.0693 42 1 9.0770 5.1486 4.0828 43 1 6.6479 3.7804 4.6892 44 1 6.6305 2.1322 3.9903 45 1 8.7228 0.8829 3.9611 46 1 8.9061 1.7669 2.4276 47 1 11.0739 0.8183 3.1739 48 1 11.1225 2.5979 3.1705 49 1 10.6671 0.7963 5.5943 50 1 12.1200 1.7683 5.2537 51 1 9.0147 4.5860 8.7699 52 1 8.6735 4.0341 6.0382 53 1 8.4289 2.2723 6.1531 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269687290.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:29 Heat of formation + Delta-G solvation = -44.079666 kcal Electronic energy + Delta-G solvation = -30567.677538 eV Core-core repulsion = 26633.259894 eV Total energy + Delta-G solvation = -3934.417645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.43935 -38.95296 -37.69903 -35.77075 -35.33485 -33.11396 -32.20124 -30.99845 -30.01658 -29.53833 -28.92639 -25.82406 -25.37994 -24.59209 -23.25727 -22.46111 -21.89219 -20.79442 -20.20512 -19.28566 -18.13816 -17.28310 -16.84570 -16.57911 -15.96735 -15.72419 -15.64430 -15.16432 -14.71530 -14.27444 -14.10842 -13.85234 -13.71893 -13.41210 -13.28204 -13.26007 -13.10471 -12.69456 -12.58757 -12.42001 -12.39047 -12.24644 -11.93418 -11.83931 -11.45067 -11.41087 -11.30738 -11.18563 -11.03597 -10.79087 -10.57431 -10.44624 -10.21703 -10.11310 -10.08294 -9.87516 -9.72056 -9.67920 -9.50583 -9.37031 -8.53911 -8.43822 -6.73430 -5.85780 -3.27123 1.87944 2.70288 2.77825 3.33731 3.41918 3.42007 3.71280 4.42494 4.47092 4.60846 4.71901 4.75675 4.79514 4.88364 4.95039 5.05812 5.10017 5.14962 5.21941 5.36840 5.44189 5.48301 5.50078 5.51746 5.55094 5.59189 5.61696 5.65700 5.74994 5.81620 5.90045 5.94319 6.03043 6.05264 6.16255 6.26389 6.28562 6.31092 6.38980 6.40826 6.48286 6.63495 6.71054 6.74388 6.82848 6.93995 6.95990 7.22921 7.51215 7.65325 7.74242 8.28198 8.37521 9.14491 9.77696 10.34779 11.23059 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.002516 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.372354 B =11127.283820 C =11340.865381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.359 6.359 6 C 0.077 3.923 7 H 0.084 0.916 8 C -0.175 4.175 9 C 0.528 3.472 10 O -0.530 6.530 11 N -0.611 5.611 12 C 0.110 3.890 13 C -0.108 4.108 14 C -0.091 4.091 15 C 0.106 3.894 16 C -0.093 4.093 17 C -0.135 4.135 18 C 0.144 3.856 19 N -0.588 5.588 20 C -0.249 4.249 21 H 0.066 0.934 22 C 0.003 3.997 23 N -0.904 5.904 24 Si 0.900 3.100 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.190 3.810 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.046 0.954 47 H 0.049 0.951 48 H 0.060 0.940 49 H 0.017 0.983 50 H 0.052 0.948 51 H 0.254 0.746 52 H 0.091 0.909 53 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.932 -7.300 -11.187 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.171 4.171 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.277 6.277 6 C 0.016 3.984 7 H 0.102 0.898 8 C -0.232 4.232 9 C 0.315 3.685 10 O -0.406 6.406 11 N -0.346 5.346 12 C -0.012 4.012 13 C -0.145 4.145 14 C -0.094 4.094 15 C -0.017 4.017 16 C -0.130 4.130 17 C -0.174 4.174 18 C 0.018 3.982 19 N -0.310 5.310 20 C -0.378 4.378 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.548 5.548 24 Si 0.730 3.270 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.063 3.937 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.035 0.965 50 H 0.071 0.929 51 H 0.064 0.936 52 H 0.109 0.891 53 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -12.134 -6.767 -11.795 18.225 hybrid contribution 0.369 0.472 0.675 0.903 sum -11.765 -6.295 -11.120 17.369 Atomic orbital electron populations 1.23900 0.95875 1.02037 1.00772 1.22819 0.96023 0.98042 1.00202 1.20640 0.97893 0.95836 0.98629 1.22533 0.94127 0.86200 0.98444 1.88012 1.53841 1.37131 1.48758 1.21810 0.89195 0.99032 0.88337 0.89797 1.22296 1.01759 1.02328 0.96851 1.19950 0.82177 0.82416 0.83915 1.90692 1.79921 1.46687 1.23331 1.48545 1.15048 1.53218 1.17822 1.22057 0.84366 0.96070 0.98749 1.22556 0.98251 0.98585 0.95136 1.21852 0.91467 0.94902 1.01137 1.22477 0.98162 0.98082 0.82940 1.21189 0.96395 0.96683 0.98763 1.22079 0.95357 1.00404 0.99593 1.20909 0.96750 0.90350 0.90195 1.43991 1.03750 1.24859 1.58432 1.19165 0.94382 1.15570 1.08704 0.91656 1.25008 0.97841 1.00504 0.96175 1.70005 1.19024 1.39045 1.26735 0.86322 0.79169 0.83511 0.77979 1.21430 1.21808 1.20472 1.20559 0.84469 1.02017 0.86639 0.88417 0.88314 0.87151 0.90532 0.89930 0.93080 0.92964 0.91108 0.91291 0.90168 0.92058 0.91923 0.89745 0.90313 0.90584 0.91108 0.92646 0.93516 0.93188 0.92089 0.96536 0.92908 0.93615 0.89113 0.96184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.26 14.32 29.02 0.42 -0.85 16 2 C -0.15 -1.13 9.52 -36.02 -0.34 -1.47 16 3 C -0.09 -0.82 6.03 -27.88 -0.17 -0.99 16 4 C 0.06 0.63 5.73 37.16 0.21 0.84 16 5 O -0.36 -4.87 9.54 -54.99 -0.52 -5.40 16 6 C 0.08 0.99 2.47 -27.89 -0.07 0.92 16 7 H 0.08 0.91 7.21 -51.92 -0.37 0.53 16 8 C -0.17 -1.91 9.42 37.15 0.35 -1.56 16 9 C 0.53 8.47 7.21 -10.98 -0.08 8.39 16 10 O -0.53 -10.53 16.85 -14.20 -0.24 -10.77 16 11 N -0.61 -9.20 3.32 -170.77 -0.57 -9.77 16 12 C 0.11 1.67 6.51 -2.95 -0.02 1.66 16 13 C -0.11 -1.75 5.68 -25.25 -0.14 -1.89 16 14 C -0.09 -1.49 0.55 -154.11 -0.08 -1.58 16 15 C 0.11 1.52 4.29 -2.88 -0.01 1.51 16 16 C -0.09 -1.41 4.66 -27.11 -0.13 -1.54 16 17 C -0.14 -2.15 5.91 -26.53 -0.16 -2.31 16 18 C 0.14 2.79 6.49 -3.70 -0.02 2.77 16 19 N -0.59 -13.39 2.88 -172.74 -0.50 -13.89 16 20 C -0.25 -6.35 9.60 -15.06 -0.14 -6.50 16 21 H 0.07 1.67 7.88 -52.49 -0.41 1.25 16 22 C 0.00 0.08 4.93 -17.43 -0.09 0.00 16 23 N -0.90 -24.59 11.18 55.49 0.62 -23.97 16 24 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.19 3.98 3.95 -4.11 -0.02 3.96 16 29 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 30 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 31 H 0.11 0.71 8.06 -52.49 -0.42 0.28 16 32 H 0.08 0.69 7.79 -51.93 -0.40 0.28 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.05 0.45 7.94 -51.93 -0.41 0.04 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.62 7.94 -51.93 -0.41 0.21 16 38 H 0.08 0.86 5.70 -51.93 -0.30 0.57 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.39 6.09 -51.93 -0.32 1.07 16 42 H 0.08 1.41 7.87 -51.93 -0.41 1.00 16 43 H 0.08 1.10 7.15 -51.93 -0.37 0.73 16 44 H 0.07 0.88 7.14 -51.93 -0.37 0.51 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.68 7.83 -51.93 -0.41 0.28 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.99 6.31 -51.93 -0.33 0.67 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.05 1.02 7.94 -51.93 -0.41 0.60 16 51 H 0.25 6.74 8.31 -40.82 -0.34 6.41 16 52 H 0.09 2.16 5.92 -51.93 -0.31 1.86 16 53 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 408.17 15.07 6.15 6.15 Total: -1.00 -30.13 408.17 -10.01 -40.14 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -9.43 Total: 0.36 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.49 Total: 1.35 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.45 Total: -47.63 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.76 Total: -16.16 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.13 -10.01 -40.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269687290.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.935 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds