Wall clock time and date at job start Tue Mar 31 2020 20:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00214 * 2 1 4 4 C 1.53006 * 109.46929 * 124.99784 * 3 2 1 5 5 O 1.42902 * 109.46699 * 180.02562 * 4 3 2 6 6 C 1.42906 * 113.99771 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.46551 * 30.00601 * 6 5 4 8 8 C 1.52991 * 109.47574 * 270.00455 * 6 5 4 9 9 C 1.50700 * 109.46689 * 149.99975 * 6 5 4 10 10 O 1.21277 * 120.00501 * 8.64694 * 9 6 5 11 11 N 1.34781 * 119.99751 * 188.63619 * 9 6 5 12 12 C 1.47085 * 125.62595 * 175.24338 * 11 9 6 13 13 C 1.54472 * 107.30308 * 180.72135 * 12 11 9 14 14 C 1.54354 * 102.85583 * 21.47537 * 13 12 11 15 15 C 1.47580 * 125.62740 * 354.93969 * 11 9 6 16 16 C 1.52063 * 110.61055 * 83.54054 * 14 13 12 17 17 C 1.53194 * 109.67843 * 64.18938 * 16 14 13 18 18 C 1.53192 * 109.28006 * 59.96048 * 17 16 14 19 19 N 1.46941 * 108.92382 * 304.68164 * 18 17 16 20 20 C 1.36937 * 120.70992 * 234.27279 * 19 18 17 21 21 H 1.07996 * 119.99619 * 27.64138 * 20 19 18 22 22 C 1.38813 * 120.00115 * 207.62824 * 20 19 18 23 23 N 1.31614 * 119.99972 * 16.75923 * 22 20 19 24 24 Si 1.86799 * 119.99887 * 196.74919 * 22 20 19 25 25 H 1.48503 * 109.47089 * 90.00359 * 24 22 20 26 26 H 1.48489 * 109.47354 * 210.00467 * 24 22 20 27 27 H 1.48499 * 109.47400 * 330.00809 * 24 22 20 28 28 C 1.47109 * 118.57831 * 54.25918 * 19 18 17 29 29 H 1.08000 * 120.00112 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99823 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00112 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47060 * 5.00477 * 3 2 1 33 33 H 1.08995 * 109.47308 * 245.00254 * 3 2 1 34 34 H 1.08990 * 109.46776 * 60.00539 * 4 3 2 35 35 H 1.09006 * 109.47091 * 300.00059 * 4 3 2 36 36 H 1.08999 * 109.47227 * 303.21915 * 8 6 5 37 37 H 1.09002 * 109.47295 * 63.21272 * 8 6 5 38 38 H 1.09004 * 109.47138 * 183.21512 * 8 6 5 39 39 H 1.09000 * 109.87799 * 300.14423 * 12 11 9 40 40 H 1.08996 * 109.87463 * 61.14310 * 12 11 9 41 41 H 1.08999 * 110.73865 * 139.81855 * 13 12 11 42 42 H 1.09000 * 110.73306 * 263.13485 * 13 12 11 43 43 H 1.08996 * 110.37874 * 275.80866 * 15 11 9 44 44 H 1.08999 * 110.37446 * 38.15745 * 15 11 9 45 45 H 1.08998 * 109.44018 * 184.25176 * 16 14 13 46 46 H 1.08999 * 109.44096 * 304.16696 * 16 14 13 47 47 H 1.08998 * 109.50330 * 179.90449 * 17 16 14 48 48 H 1.08998 * 109.50105 * 299.97799 * 17 16 14 49 49 H 1.09001 * 109.56154 * 64.50808 * 18 17 16 50 50 H 1.08993 * 109.56259 * 184.73527 * 18 17 16 51 51 H 0.96998 * 120.00028 * 179.97438 * 23 22 20 52 52 H 1.09005 * 109.57543 * 187.93433 * 28 19 18 53 53 H 1.09003 * 109.57335 * 67.55082 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 8 3.7492 2.5708 1.1820 6 6 4.6878 2.7000 2.2518 7 1 5.0646 1.7144 2.5255 8 6 3.9990 3.3365 3.4606 9 6 5.8352 3.5718 1.8107 10 8 5.7761 4.1630 0.7534 11 7 6.9270 3.6946 2.5913 12 6 8.1527 4.4282 2.2408 13 6 9.1318 4.2802 3.4264 14 6 8.6113 3.0176 4.1459 15 6 7.0876 3.1205 3.9414 16 6 9.1604 1.7617 3.4875 17 6 10.6836 1.7203 3.6452 18 6 11.0379 1.7129 5.1356 19 7 10.4101 2.8745 5.7804 20 6 11.1593 3.7600 6.5083 21 1 12.2045 3.9013 6.2763 22 6 10.5752 4.4760 7.5441 23 7 9.4227 4.0858 8.0459 24 14 11.4250 5.9933 8.2261 25 1 10.9747 7.1926 7.4749 26 1 11.0805 6.1504 9.6619 27 1 12.8955 5.8433 8.0834 28 6 8.9596 3.0659 5.6270 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4026 -0.9313 34 1 3.7399 0.5065 1.0921 35 1 2.4772 1.2355 2.1131 36 1 3.5724 4.2970 3.1717 37 1 3.2055 2.6784 3.8149 38 1 4.7283 3.4874 4.2566 39 1 8.5947 4.0024 1.3399 40 1 7.9209 5.4807 2.0778 41 1 10.1504 4.1286 3.0693 42 1 9.0770 5.1486 4.0828 43 1 6.6479 3.7804 4.6892 44 1 6.6305 2.1322 3.9903 45 1 8.7228 0.8829 3.9611 46 1 8.9061 1.7669 2.4276 47 1 11.0739 0.8183 3.1739 48 1 11.1225 2.5979 3.1705 49 1 10.6671 0.7963 5.5943 50 1 12.1200 1.7683 5.2537 51 1 9.0147 4.5860 8.7699 52 1 8.6735 4.0341 6.0382 53 1 8.4289 2.2723 6.1531 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269687290.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:28 Heat of formation + Delta-G solvation = -59.333401 kcal Electronic energy + Delta-G solvation = -30568.338990 eV Core-core repulsion = 26633.259894 eV Total energy + Delta-G solvation = -3935.079096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.70007 -40.16513 -38.79650 -37.26144 -36.00214 -34.78064 -33.36450 -32.29536 -31.69625 -30.60195 -29.80007 -27.27059 -27.05848 -25.68234 -24.14170 -23.86871 -23.14020 -22.30225 -20.87137 -20.34606 -19.63572 -18.55447 -18.27469 -17.70120 -17.08206 -16.87274 -16.76142 -16.43753 -15.86786 -15.70216 -15.47709 -15.17350 -14.85187 -14.76359 -14.55804 -14.29599 -14.20302 -14.11295 -13.77989 -13.58505 -13.43175 -13.26262 -13.18914 -13.13740 -12.90187 -12.70017 -12.47978 -12.23430 -12.16579 -12.12520 -12.05998 -11.97193 -11.82243 -11.64949 -11.38176 -11.19537 -11.04010 -10.95572 -10.52160 -10.47859 -10.26056 -9.70493 -8.59867 -7.82959 -5.25252 1.33156 1.47729 1.48232 1.51056 1.57310 1.69318 2.53901 2.77187 3.27961 3.38449 3.47524 3.80794 3.82511 3.90304 3.93621 3.98470 4.06986 4.15102 4.23442 4.25150 4.26488 4.36606 4.45084 4.45477 4.49519 4.58204 4.61455 4.71991 4.72269 4.75882 4.80451 4.89272 4.93214 4.96495 5.03577 5.10599 5.13663 5.15007 5.16445 5.20442 5.29792 5.36097 5.39007 5.51260 5.63873 5.72624 5.73726 5.81289 5.85732 6.08574 6.43260 6.45522 7.05200 7.21354 7.92741 8.43913 9.23059 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.002516 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.372354 B =11127.283820 C =11340.865381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C -0.091 4.091 4 C 0.059 3.941 5 O -0.387 6.387 6 C 0.081 3.919 7 H 0.110 0.890 8 C -0.170 4.170 9 C 0.524 3.476 10 O -0.575 6.575 11 N -0.607 5.607 12 C 0.114 3.886 13 C -0.100 4.100 14 C -0.084 4.084 15 C 0.113 3.887 16 C -0.087 4.087 17 C -0.125 4.125 18 C 0.140 3.860 19 N -0.605 5.605 20 C -0.251 4.251 21 H 0.062 0.938 22 C -0.044 4.044 23 N -0.930 5.930 24 Si 0.954 3.046 25 H -0.288 1.288 26 H -0.298 1.298 27 H -0.272 1.272 28 C 0.201 3.799 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.057 0.943 49 H 0.015 0.985 50 H 0.048 0.952 51 H 0.249 0.751 52 H 0.057 0.943 53 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.546 -9.015 -12.046 19.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C -0.129 4.129 4 C -0.017 4.017 5 O -0.306 6.306 6 C 0.020 3.980 7 H 0.128 0.872 8 C -0.227 4.227 9 C 0.313 3.687 10 O -0.454 6.454 11 N -0.341 5.341 12 C -0.008 4.008 13 C -0.138 4.138 14 C -0.087 4.087 15 C -0.010 4.010 16 C -0.125 4.125 17 C -0.164 4.164 18 C 0.014 3.986 19 N -0.328 5.328 20 C -0.381 4.381 21 H 0.080 0.920 22 C -0.240 4.240 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.215 1.215 26 H -0.225 1.225 27 H -0.197 1.197 28 C 0.075 3.925 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.075 0.925 49 H 0.033 0.967 50 H 0.067 0.933 51 H 0.058 0.942 52 H 0.075 0.925 53 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -12.733 -8.507 -12.659 19.868 hybrid contribution 0.580 0.973 0.938 1.471 sum -12.152 -7.535 -11.722 18.489 Atomic orbital electron populations 1.24079 0.95789 1.02797 0.99559 1.22816 0.96240 0.97629 1.01257 1.20620 0.97677 0.96630 0.97944 1.22744 0.94362 0.85135 0.99438 1.87989 1.54227 1.39095 1.49274 1.21861 0.88191 0.99482 0.88466 0.87219 1.22277 1.02307 1.02122 0.96032 1.20649 0.82737 0.82122 0.83162 1.90668 1.80786 1.48664 1.25299 1.48549 1.14860 1.52783 1.17897 1.21966 0.84378 0.96087 0.98362 1.22410 0.98603 0.97679 0.95077 1.21640 0.93180 0.95877 0.97977 1.22441 0.96639 0.99519 0.82383 1.21162 0.95793 0.95966 0.99553 1.21961 0.95978 1.01687 0.96771 1.21057 0.96352 0.88899 0.92265 1.44235 1.04354 1.25712 1.58480 1.19397 0.94538 1.15757 1.08448 0.92004 1.25592 0.98659 1.02792 0.96966 1.70128 1.20230 1.39964 1.27314 0.85459 0.78604 0.80770 0.76785 1.21539 1.22484 1.19745 1.20294 0.83494 0.99412 0.89287 0.88412 0.86869 0.86041 0.91155 0.91029 0.91941 0.91443 0.92493 0.88829 0.90033 0.91325 0.92436 0.89755 0.92603 0.90905 0.88284 0.91676 0.91859 0.90304 0.92451 0.96675 0.93314 0.94211 0.92454 0.97961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.11 14.32 67.78 0.97 -1.14 16 2 C -0.16 -2.07 9.52 25.65 0.24 -1.83 16 3 C -0.09 -1.51 6.03 29.85 0.18 -1.33 16 4 C 0.06 1.04 5.73 71.98 0.41 1.45 16 5 O -0.39 -9.93 9.54 -130.09 -1.24 -11.17 16 6 C 0.08 1.88 2.47 29.85 0.07 1.96 16 7 H 0.11 1.97 7.21 -2.38 -0.02 1.95 16 8 C -0.17 -3.36 9.42 71.98 0.68 -2.68 16 9 C 0.52 16.15 7.21 87.66 0.63 16.78 16 10 O -0.57 -22.69 16.85 15.87 0.27 -22.42 16 11 N -0.61 -17.37 3.32 -812.58 -2.70 -20.07 16 12 C 0.11 3.39 6.51 86.77 0.56 3.95 16 13 C -0.10 -3.20 5.68 31.55 0.18 -3.02 16 14 C -0.08 -2.66 0.55 -51.92 -0.03 -2.69 16 15 C 0.11 3.01 4.29 86.54 0.37 3.39 16 16 C -0.09 -2.41 4.66 30.35 0.14 -2.26 16 17 C -0.13 -3.66 5.91 30.72 0.18 -3.48 16 18 C 0.14 5.24 6.49 86.36 0.56 5.80 16 19 N -0.60 -27.55 2.88 -700.44 -2.02 -29.57 16 20 C -0.25 -12.93 9.60 84.03 0.81 -12.12 16 21 H 0.06 3.17 7.88 -2.91 -0.02 3.14 16 22 C -0.04 -2.35 4.93 84.86 0.42 -1.93 16 23 N -0.93 -51.73 11.18 21.65 0.24 -51.49 16 24 Si 0.95 43.39 29.59 68.60 2.03 45.42 16 25 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 C 0.20 8.48 3.95 86.01 0.34 8.82 16 29 H 0.10 1.09 7.84 -2.91 -0.02 1.07 16 30 H 0.11 0.96 8.06 -2.91 -0.02 0.93 16 31 H 0.12 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.07 1.22 7.79 -2.39 -0.02 1.20 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 0.94 8.08 -2.39 -0.02 0.92 16 35 H 0.07 0.97 7.94 -2.38 -0.02 0.95 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.39 7.94 -2.39 -0.02 1.37 16 38 H 0.08 1.58 5.70 -2.39 -0.01 1.57 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 2.70 6.09 -2.39 -0.01 2.68 16 42 H 0.06 2.04 7.87 -2.39 -0.02 2.02 16 43 H 0.07 2.04 7.15 -2.39 -0.02 2.02 16 44 H 0.10 2.13 7.14 -2.39 -0.02 2.11 16 45 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.06 1.60 7.83 -2.39 -0.02 1.58 16 47 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 48 H 0.06 1.74 6.31 -2.39 -0.02 1.72 16 49 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.05 1.83 7.94 -2.39 -0.02 1.81 16 51 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 52 H 0.06 2.81 5.92 -2.38 -0.01 2.80 16 53 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -66.10 408.17 4.17 -61.93 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.86 Total: 17.72 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 6.73 Total: 9.65 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -4.48 Total: -101.13 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.97 Total: -33.59 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -66.10 4.17 -61.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269687290.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.597 kcal (2) G-P(sol) polarization free energy of solvation -66.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds