Wall clock time and date at job start Tue Mar 31 2020 19:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47239 * 2 1 4 4 C 1.50699 * 109.47363 * 239.99472 * 2 1 3 5 5 O 1.21277 * 120.00607 * 240.00251 * 4 2 1 6 6 N 1.34782 * 119.99280 * 60.00285 * 4 2 1 7 7 C 1.46509 * 119.99602 * 179.97438 * 6 4 2 8 8 C 1.52988 * 109.47040 * 179.97438 * 7 6 4 9 9 H 1.09007 * 109.44028 * 300.17137 * 8 7 6 10 10 C 1.53147 * 109.43540 * 60.08412 * 8 7 6 11 11 C 1.53698 * 108.87776 * 66.17028 * 10 8 7 12 12 H 1.09002 * 112.58441 * 187.92991 * 11 10 8 13 13 C 1.54216 * 107.72396 * 312.06655 * 11 10 8 14 14 C 1.54303 * 104.79176 * 88.97634 * 13 11 10 15 15 C 1.54608 * 104.75091 * 359.82742 * 14 13 11 16 16 H 1.08999 * 112.19327 * 146.80628 * 15 14 13 17 17 C 1.53702 * 107.82896 * 271.33601 * 15 14 13 18 18 N 1.48286 * 104.26205 * 25.13627 * 15 14 13 19 19 C 1.36941 * 128.21040 * 138.36032 * 18 15 14 20 20 H 1.07995 * 120.00038 * 199.06462 * 19 18 15 21 21 C 1.38811 * 119.99887 * 19.06584 * 19 18 15 22 22 N 1.31623 * 119.99989 * 355.49025 * 21 19 18 23 23 Si 1.86794 * 120.00121 * 175.48607 * 21 19 18 24 24 H 1.48495 * 109.47340 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47574 * 300.00429 * 23 21 19 26 26 H 1.48504 * 109.46880 * 60.00205 * 23 21 19 27 27 C 1.53005 * 109.47119 * 120.00004 * 2 1 3 28 28 H 1.09000 * 110.27491 * 180.63901 * 27 2 1 29 29 C 1.54951 * 110.30853 * 302.83414 * 27 2 1 30 30 C 1.55300 * 100.94224 * 155.36004 * 29 27 2 31 31 C 1.54382 * 102.25244 * 325.86388 * 30 29 27 32 32 O 1.43235 * 107.58982 * 21.35880 * 31 30 29 33 33 H 1.09001 * 109.46990 * 300.00253 * 1 2 3 34 34 H 1.09003 * 109.46657 * 60.00269 * 1 2 3 35 35 H 1.08994 * 109.46719 * 180.02562 * 1 2 3 36 36 H 0.96993 * 120.00777 * 0.02562 * 6 4 2 37 37 H 1.09005 * 109.46622 * 59.99933 * 7 6 4 38 38 H 1.08994 * 109.46956 * 300.00137 * 7 6 4 39 39 H 1.09001 * 109.57008 * 306.35396 * 10 8 7 40 40 H 1.09003 * 109.57198 * 185.99176 * 10 8 7 41 41 H 1.09001 * 110.51046 * 330.06698 * 13 11 10 42 42 H 1.09003 * 110.21638 * 207.73588 * 13 11 10 43 43 H 1.08996 * 110.38294 * 241.00170 * 14 13 11 44 44 H 1.09002 * 110.38435 * 118.64103 * 14 13 11 45 45 H 1.08999 * 109.57455 * 167.58754 * 17 15 14 46 46 H 1.09002 * 109.56910 * 287.95419 * 17 15 14 47 47 H 0.97001 * 119.99963 * 179.97438 * 22 21 19 48 48 H 1.08999 * 111.12429 * 273.28174 * 29 27 2 49 49 H 1.09000 * 111.12436 * 37.43641 * 29 27 2 50 50 H 1.09005 * 110.84873 * 207.67660 * 30 29 27 51 51 H 1.08992 * 111.02524 * 84.13487 * 30 29 27 52 52 H 1.09000 * 109.83169 * 261.84338 * 31 30 29 53 53 H 1.09001 * 109.82530 * 140.87157 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1956 -0.9404 -3.6507 8 6 1.6851 -0.2196 -4.8999 9 1 0.5950 -0.2181 -4.8978 10 6 2.1967 1.2239 -4.9002 11 6 3.7255 1.2096 -5.0574 12 1 4.1689 2.1969 -4.9275 13 6 4.2909 0.1826 -4.0554 14 6 4.2945 -1.1559 -4.8231 15 6 3.7253 -0.8109 -6.2186 16 1 4.1684 -1.4204 -7.0062 17 6 2.1964 -0.9536 -6.1516 18 7 4.0259 0.6311 -6.3894 19 6 4.4791 1.2749 -7.5098 20 1 4.9438 2.2460 -7.4238 21 6 4.3413 0.6794 -8.7561 22 7 3.8565 -0.5405 -8.8526 23 14 4.8437 1.6092 -10.2963 24 1 4.5983 0.7599 -11.4894 25 1 4.0449 2.8564 -10.4044 26 1 6.2869 1.9508 -10.2196 27 6 2.0400 -0.7213 1.2493 28 1 3.1299 -0.7191 1.2682 29 6 1.4764 -0.0487 2.5264 30 6 1.5448 -1.2275 3.5351 31 6 1.2499 -2.4465 2.6348 32 8 1.5434 -2.0687 1.2847 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8901 35 1 -0.3632 -1.0276 0.0005 36 1 1.1495 0.5388 -2.5436 37 1 1.8327 -1.9682 -3.6508 38 1 3.2856 -0.9399 -3.6505 39 1 1.9309 1.7057 -3.9593 40 1 1.7493 1.7696 -5.7310 41 1 3.6503 0.1143 -3.1762 42 1 5.3054 0.4573 -3.7665 43 1 3.6558 -1.8829 -4.3216 44 1 5.3108 -1.5398 -4.9121 45 1 1.7489 -0.5105 -7.0413 46 1 1.9304 -2.0091 -6.0939 47 1 3.7598 -0.9565 -9.7235 48 1 2.1092 0.7792 2.8462 49 1 0.4483 0.2806 2.3759 50 1 0.7826 -1.1221 4.3072 51 1 2.5369 -1.3047 3.9797 52 1 0.1994 -2.7244 2.7210 53 1 1.8808 -3.2851 2.9297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271744110.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:34 Heat of formation + Delta-G solvation = 13.237542 kcal Electronic energy + Delta-G solvation = -31532.269077 eV Core-core repulsion = 27600.336893 eV Total energy + Delta-G solvation = -3931.932184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.71473 -40.98115 -39.53322 -36.13971 -34.95134 -34.25962 -32.90693 -32.77568 -32.28495 -31.32299 -29.05560 -28.12879 -26.02979 -25.11026 -24.80142 -22.92758 -22.29080 -22.00561 -21.11019 -20.68408 -20.23079 -18.73936 -18.04165 -17.74967 -17.42727 -16.99742 -16.55536 -16.31784 -15.95139 -15.45224 -15.35506 -14.99092 -14.57647 -14.49202 -14.39543 -14.19193 -14.11089 -13.67412 -13.33196 -13.16437 -13.10763 -13.03847 -12.81418 -12.69851 -12.67907 -12.58330 -12.52670 -12.41282 -12.28791 -12.01516 -11.97278 -11.86121 -11.49836 -11.40480 -11.24609 -11.01336 -10.87307 -10.78213 -10.56883 -10.40009 -10.34172 -9.41413 -8.66840 -7.78514 -5.17764 1.47885 1.49496 1.55612 1.84658 2.36836 2.52427 2.98806 3.35970 3.58712 3.63020 3.77460 3.92877 3.97867 3.98763 4.05182 4.07277 4.14583 4.21288 4.28257 4.30700 4.40374 4.43416 4.50172 4.58186 4.61984 4.70360 4.75371 4.82153 4.85998 4.89057 4.92114 4.95148 4.98991 5.02757 5.04923 5.08477 5.14615 5.16359 5.20956 5.25947 5.32328 5.39938 5.46018 5.51815 5.56322 5.62824 5.66378 5.84451 5.90441 6.26512 6.35842 6.75742 7.13927 7.47049 7.80214 8.62470 9.29828 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.033694 B = 0.002540 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.800533 B =11020.699323 C =11105.726594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 H 0.138 0.862 4 C 0.507 3.493 5 O -0.576 6.576 6 N -0.714 5.714 7 C 0.016 3.984 8 C -0.075 4.075 9 H 0.068 0.932 10 C -0.112 4.112 11 C 0.143 3.857 12 H 0.068 0.932 13 C -0.150 4.150 14 C -0.165 4.165 15 C 0.171 3.829 16 H 0.074 0.926 17 C -0.100 4.100 18 N -0.606 5.606 19 C -0.233 4.233 20 H 0.074 0.926 21 C -0.056 4.056 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.297 1.297 25 H -0.280 1.280 26 H -0.281 1.281 27 C 0.092 3.908 28 H 0.055 0.945 29 C -0.147 4.147 30 C -0.149 4.149 31 C 0.037 3.963 32 O -0.395 6.395 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.407 0.593 37 H 0.034 0.966 38 H 0.181 0.819 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.117 0.883 42 H 0.051 0.949 43 H 0.100 0.900 44 H 0.044 0.956 45 H 0.036 0.964 46 H 0.045 0.955 47 H 0.245 0.755 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.101 0.899 51 H 0.077 0.923 52 H 0.073 0.927 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.053 3.960 24.998 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 H 0.155 0.845 4 C 0.294 3.706 5 O -0.455 6.455 6 N -0.367 5.367 7 C -0.104 4.104 8 C -0.094 4.094 9 H 0.086 0.914 10 C -0.151 4.151 11 C 0.037 3.963 12 H 0.086 0.914 13 C -0.188 4.188 14 C -0.203 4.203 15 C 0.064 3.936 16 H 0.092 0.908 17 C -0.140 4.140 18 N -0.328 5.328 19 C -0.363 4.363 20 H 0.092 0.908 21 C -0.251 4.251 22 N -0.583 5.583 23 Si 0.798 3.202 24 H -0.224 1.224 25 H -0.206 1.206 26 H -0.207 1.207 27 C 0.035 3.965 28 H 0.073 0.927 29 C -0.184 4.184 30 C -0.187 4.187 31 C -0.040 4.040 32 O -0.315 6.315 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.244 0.756 37 H 0.052 0.948 38 H 0.196 0.804 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.135 0.865 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.096 0.904 52 H 0.091 0.909 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.558 3.121 24.609 26.241 hybrid contribution 0.086 0.225 -1.557 1.575 sum -8.472 3.346 23.052 24.786 Atomic orbital electron populations 1.21789 0.91177 1.02437 1.04184 1.21601 0.99307 1.01178 0.90733 0.84475 1.21120 0.79741 0.84314 0.85382 1.90705 1.39670 1.27903 1.87272 1.46198 1.53359 1.31904 1.05206 1.24737 1.08289 0.94087 0.83264 1.21246 0.99120 0.95543 0.93443 0.91353 1.22041 0.96908 0.95364 1.00817 1.21688 0.93760 0.95564 0.85317 0.91423 1.23305 1.01171 0.94894 0.99447 1.23492 1.00601 0.97848 0.98388 1.21512 0.92531 0.86344 0.93206 0.90758 1.21931 0.98301 0.97727 0.96059 1.45317 1.76107 1.03786 1.07613 1.19235 1.30875 1.01546 0.84610 0.90831 1.25619 1.01604 0.97923 0.99908 1.70004 1.51733 1.13870 1.22682 0.85302 0.77838 0.77710 0.79321 1.22382 1.20596 1.20747 1.22805 0.97260 0.81939 0.94529 0.92690 1.23449 1.03752 0.98627 0.92587 1.23101 1.03729 0.93338 0.98507 1.23282 1.00691 0.98055 0.81923 1.88560 1.85271 1.30612 1.27054 0.88842 0.90849 0.93703 0.75646 0.94776 0.80361 0.89728 0.93930 0.86532 0.93041 0.88221 0.93734 0.94556 0.93631 0.94518 0.87952 0.88237 0.88026 0.90396 0.90916 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.63 71.98 0.62 -1.25 16 2 C -0.11 -1.85 2.70 -11.54 -0.03 -1.88 16 3 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 4 C 0.51 13.58 6.79 87.66 0.59 14.17 16 5 O -0.58 -21.26 15.39 13.03 0.20 -21.06 16 6 N -0.71 -17.43 4.27 -463.06 -1.98 -19.41 16 7 C 0.02 0.51 2.68 86.37 0.23 0.74 16 8 C -0.07 -2.48 2.79 -10.46 -0.03 -2.51 16 9 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 10 C -0.11 -3.68 5.28 30.88 0.16 -3.51 16 11 C 0.14 5.55 4.31 45.29 0.20 5.75 16 12 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 13 C -0.15 -5.29 5.70 31.45 0.18 -5.11 16 14 C -0.17 -6.56 5.72 31.58 0.18 -6.38 16 15 C 0.17 8.09 3.18 45.43 0.14 8.23 16 16 H 0.07 4.18 6.13 -2.39 -0.01 4.16 16 17 C -0.10 -4.28 5.38 31.12 0.17 -4.11 16 18 N -0.61 -29.91 2.82 -637.96 -1.80 -31.71 16 19 C -0.23 -12.81 10.38 84.03 0.87 -11.93 16 20 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 21 C -0.06 -3.15 5.49 84.86 0.47 -2.68 16 22 N -0.94 -54.76 10.58 21.65 0.23 -54.53 16 23 Si 0.97 45.46 29.56 68.60 2.03 47.49 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 27 C 0.09 1.78 2.69 31.26 0.08 1.87 16 28 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 29 C -0.15 -1.53 6.45 32.05 0.21 -1.33 16 30 C -0.15 -1.60 7.02 31.85 0.22 -1.38 16 31 C 0.04 0.64 7.79 72.45 0.56 1.20 16 32 O -0.40 -10.06 9.41 -132.93 -1.25 -11.31 16 33 H 0.09 0.77 6.05 -2.39 -0.01 0.75 16 34 H 0.07 0.81 7.57 -2.39 -0.02 0.79 16 35 H 0.04 0.84 7.68 -2.39 -0.02 0.82 16 36 H 0.41 7.45 6.74 -92.71 -0.62 6.82 16 37 H 0.03 1.18 8.00 -2.38 -0.02 1.16 16 38 H 0.18 6.09 1.12 -109.40 -0.12 5.97 16 39 H 0.08 2.06 6.72 -2.39 -0.02 2.04 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.12 3.63 3.93 -2.39 -0.01 3.62 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.10 3.73 4.85 -2.39 -0.01 3.72 16 44 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 48 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.10 0.76 5.74 -2.39 -0.01 0.75 16 50 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 51 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.59 380.96 2.44 -70.16 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.17 Total: 30.50 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 4.83 Total: -10.12 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -3.55 Total: -105.65 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.05 Total: -32.38 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.59 2.44 -70.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271744110.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.394 kcal (2) G-P(sol) polarization free energy of solvation -72.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds