Wall clock time and date at job start Tue Mar 31 2020 19:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47702 * 2 1 4 4 C 1.50702 * 109.47051 * 120.00086 * 2 1 3 5 5 O 1.21286 * 119.99906 * 119.99640 * 4 2 1 6 6 N 1.34770 * 120.00096 * 300.00074 * 4 2 1 7 7 C 1.46496 * 120.00312 * 180.02562 * 6 4 2 8 8 C 1.52992 * 109.47470 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.43711 * 59.93993 * 8 7 6 10 10 C 1.53151 * 109.43835 * 179.85035 * 8 7 6 11 11 C 1.53706 * 108.87379 * 66.13068 * 10 8 7 12 12 H 1.08996 * 112.58424 * 187.93674 * 11 10 8 13 13 C 1.54222 * 107.72407 * 312.06473 * 11 10 8 14 14 C 1.54304 * 104.79162 * 88.97658 * 13 11 10 15 15 C 1.54611 * 104.74976 * 359.82649 * 14 13 11 16 16 H 1.09003 * 112.18559 * 146.80071 * 15 14 13 17 17 C 1.53700 * 107.83042 * 271.33244 * 15 14 13 18 18 N 1.48290 * 107.27610 * 64.00974 * 11 10 8 19 19 C 1.36939 * 128.21043 * 107.44148 * 18 11 10 20 20 H 1.08001 * 119.99922 * 34.53856 * 19 18 11 21 21 C 1.38819 * 119.99981 * 214.54533 * 19 18 11 22 22 N 1.31619 * 119.99763 * 354.99488 * 21 19 18 23 23 Si 1.86801 * 119.99783 * 175.00293 * 21 19 18 24 24 H 1.48505 * 109.46729 * 269.99537 * 23 21 19 25 25 H 1.48499 * 109.47356 * 29.99738 * 23 21 19 26 26 H 1.48498 * 109.46696 * 149.99862 * 23 21 19 27 27 C 1.53005 * 109.47124 * 239.99964 * 2 1 3 28 28 H 1.09000 * 110.33435 * 187.25071 * 27 2 1 29 29 C 1.54480 * 110.36904 * 65.00101 * 27 2 1 30 30 C 1.54516 * 104.05839 * 217.19131 * 29 27 2 31 31 C 1.54476 * 104.06619 * 0.02562 * 30 29 27 32 32 O 1.44423 * 110.36947 * 309.62272 * 27 2 1 33 33 H 1.08998 * 109.47207 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47080 * 300.00168 * 1 2 3 35 35 H 1.09003 * 109.47054 * 59.99705 * 1 2 3 36 36 H 0.97001 * 120.00137 * 359.97438 * 6 4 2 37 37 H 1.08998 * 109.47666 * 59.99488 * 7 6 4 38 38 H 1.09003 * 109.47294 * 299.99778 * 7 6 4 39 39 H 1.08992 * 109.56951 * 306.31189 * 10 8 7 40 40 H 1.09001 * 109.56952 * 185.94705 * 10 8 7 41 41 H 1.09004 * 110.50880 * 330.07114 * 13 11 10 42 42 H 1.08997 * 110.31333 * 207.78654 * 13 11 10 43 43 H 1.09003 * 110.38608 * 241.00499 * 14 13 11 44 44 H 1.09007 * 110.47764 * 118.69184 * 14 13 11 45 45 H 1.08993 * 109.56930 * 167.58939 * 17 15 14 46 46 H 1.08994 * 109.57067 * 287.95577 * 17 15 14 47 47 H 0.96996 * 119.99577 * 180.02562 * 22 21 19 48 48 H 1.08999 * 110.51211 * 335.83580 * 29 27 2 49 49 H 1.09005 * 110.51021 * 98.55045 * 29 27 2 50 50 H 1.08997 * 110.50865 * 118.65373 * 30 29 27 51 51 H 1.09003 * 110.50744 * 241.35531 * 30 29 27 52 52 H 1.09001 * 110.36991 * 142.80986 * 31 30 29 53 53 H 1.09003 * 110.37441 * 265.04042 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4545 7 6 2.1955 -0.9403 3.6507 8 6 1.6859 -0.2188 4.8999 9 1 0.5959 -0.2183 4.8992 10 6 2.1942 -0.9432 6.1498 11 6 3.7236 -0.8054 6.2170 12 1 4.1645 -1.4138 7.0066 13 6 4.2885 -1.1603 4.8266 14 6 4.2972 0.1744 4.0524 15 6 3.7310 1.2115 5.0495 16 1 4.1778 2.1969 4.9166 17 6 2.2023 1.2304 4.8916 18 7 4.0289 0.6362 6.3834 19 6 4.4839 1.2820 7.5020 20 1 5.1631 0.7812 8.1760 21 6 4.0720 2.5804 7.7696 22 7 3.3239 3.2259 6.9001 23 14 4.5797 3.4114 9.3637 24 1 3.5625 3.1376 10.4104 25 1 5.8957 2.8806 9.8014 26 1 4.6844 4.8767 9.1464 27 6 2.0400 -0.7213 -1.2493 28 1 3.1222 -0.8426 -1.2014 29 6 1.6422 0.0599 -2.5212 30 6 1.3101 -1.0433 -3.5508 31 6 1.5459 -2.3605 -2.7789 32 8 1.3935 -2.0053 -1.3875 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 -0.3633 0.5139 -0.8900 36 1 1.1494 0.5388 2.5436 37 1 3.2854 -0.9400 3.6506 38 1 1.8325 -1.9681 3.6509 39 1 1.9247 -1.9979 6.0955 40 1 1.7479 -0.4958 7.0380 41 1 3.6456 -1.8849 4.3267 42 1 5.3013 -1.5525 4.9185 43 1 3.6587 0.1067 3.1716 44 1 5.3139 0.4412 3.7636 45 1 1.7564 1.7802 5.7204 46 1 1.9385 1.7099 3.9491 47 1 3.0364 4.1332 7.0869 48 1 0.7665 0.6803 -2.3303 49 1 2.4751 0.6702 -2.8707 50 1 0.2703 -0.9683 -3.8689 51 1 1.9787 -0.9784 -4.4093 52 1 0.8033 -3.1056 -3.0643 53 1 2.5515 -2.7362 -2.9677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271744112.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:43 Heat of formation + Delta-G solvation = 9.285605 kcal Electronic energy + Delta-G solvation = -31601.446010 eV Core-core repulsion = 27669.342457 eV Total energy + Delta-G solvation = -3932.103553 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.70143 -40.97622 -39.54512 -36.09427 -34.96177 -34.34380 -32.88055 -32.75980 -31.85859 -31.70379 -28.99329 -28.09730 -26.03444 -25.11562 -24.79309 -23.13758 -22.16584 -21.87247 -21.07861 -20.83359 -20.16740 -18.79021 -18.19436 -17.54546 -17.13842 -16.85932 -16.64319 -16.47650 -15.99607 -15.84608 -15.11089 -14.94926 -14.63476 -14.50683 -14.44145 -14.18575 -14.04828 -13.71462 -13.27617 -13.19790 -13.17402 -13.01663 -12.87492 -12.76076 -12.64199 -12.52096 -12.41434 -12.37587 -12.32971 -11.98809 -11.96945 -11.93390 -11.45259 -11.34230 -11.28817 -11.02461 -10.82052 -10.79097 -10.61299 -10.53657 -10.37678 -9.40084 -8.44054 -7.89101 -5.32586 1.46450 1.48038 1.55551 1.80207 2.36351 2.49883 3.03053 3.30152 3.63517 3.65564 3.74780 3.95422 3.98479 4.04080 4.05658 4.07323 4.14996 4.17524 4.29777 4.31157 4.44262 4.45777 4.49346 4.58427 4.63820 4.66784 4.75106 4.82138 4.84805 4.87481 4.91810 4.96631 4.97941 5.02185 5.04254 5.09739 5.17145 5.19885 5.20545 5.26056 5.33479 5.40665 5.42647 5.55010 5.57604 5.62054 5.70960 5.77601 6.00180 6.02165 6.38241 6.71149 7.13999 7.40938 7.74404 8.67505 9.24228 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.002712 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.181704 B =10320.408211 C =10666.979643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 H 0.132 0.868 4 C 0.509 3.491 5 O -0.578 6.578 6 N -0.715 5.715 7 C 0.014 3.986 8 C -0.076 4.076 9 H 0.065 0.935 10 C -0.114 4.114 11 C 0.140 3.860 12 H 0.064 0.936 13 C -0.150 4.150 14 C -0.164 4.164 15 C 0.185 3.815 16 H 0.043 0.957 17 C -0.099 4.099 18 N -0.603 5.603 19 C -0.252 4.252 20 H 0.059 0.941 21 C -0.034 4.034 22 N -0.915 5.915 23 Si 0.963 3.037 24 H -0.286 1.286 25 H -0.275 1.275 26 H -0.293 1.293 27 C 0.090 3.910 28 H 0.054 0.946 29 C -0.149 4.149 30 C -0.148 4.148 31 C 0.033 3.967 32 O -0.387 6.387 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.405 0.595 37 H 0.182 0.818 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.110 0.890 42 H 0.058 0.942 43 H 0.110 0.890 44 H 0.042 0.958 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.249 0.751 48 H 0.094 0.906 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.089 0.911 52 H 0.097 0.903 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.352 -5.625 -19.883 21.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 H 0.149 0.851 4 C 0.296 3.704 5 O -0.458 6.458 6 N -0.367 5.367 7 C -0.106 4.106 8 C -0.095 4.095 9 H 0.084 0.916 10 C -0.154 4.154 11 C 0.033 3.967 12 H 0.082 0.918 13 C -0.188 4.188 14 C -0.202 4.202 15 C 0.079 3.921 16 H 0.062 0.938 17 C -0.138 4.138 18 N -0.326 5.326 19 C -0.381 4.381 20 H 0.077 0.923 21 C -0.231 4.231 22 N -0.559 5.559 23 Si 0.791 3.209 24 H -0.213 1.213 25 H -0.200 1.200 26 H -0.220 1.220 27 C 0.032 3.968 28 H 0.072 0.928 29 C -0.186 4.186 30 C -0.185 4.185 31 C -0.044 4.044 32 O -0.307 6.307 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.241 0.759 37 H 0.197 0.803 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.127 0.873 42 H 0.076 0.924 43 H 0.128 0.872 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.112 0.888 49 H 0.109 0.891 50 H 0.103 0.897 51 H 0.108 0.892 52 H 0.115 0.885 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.974 -6.221 -19.633 21.744 hybrid contribution 0.101 1.044 1.263 1.642 sum -6.873 -5.177 -18.370 20.285 Atomic orbital electron populations 1.21687 0.91037 1.02592 1.03814 1.21506 0.99465 1.00949 0.90692 0.85056 1.21038 0.79697 0.84291 0.85363 1.90674 1.39819 1.27949 1.87318 1.46230 1.53123 1.31826 1.05480 1.24815 1.08394 0.94234 0.83133 1.21256 0.98983 0.95535 0.93697 0.91642 1.21995 0.97429 0.99240 0.96711 1.21712 0.93223 0.86677 0.95095 0.91779 1.23250 1.01351 0.97315 0.96864 1.23505 1.00633 0.96209 0.99865 1.21143 0.93111 0.93969 0.83926 0.93832 1.21990 0.97547 0.94503 0.99772 1.45147 1.76595 1.03349 1.07489 1.19039 1.21168 0.97619 1.00300 0.92322 1.25925 0.98032 0.99145 1.00019 1.70045 1.39294 1.11339 1.35245 0.85357 0.77859 0.77114 0.80556 1.21321 1.20005 1.21980 1.22766 0.96088 0.83617 0.94377 0.92750 1.23084 1.03590 0.98563 0.93389 1.22918 1.03570 0.93400 0.98643 1.23557 1.01455 0.98297 0.81079 1.89180 1.77598 1.36645 1.27228 0.93251 0.91178 0.89295 0.75924 0.80315 0.93711 0.90891 0.94108 0.87276 0.92363 0.87247 0.93939 0.93409 0.92796 0.94185 0.88787 0.89138 0.89657 0.89212 0.88470 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.66 71.98 0.62 -1.59 16 2 C -0.11 -2.11 2.59 -11.54 -0.03 -2.14 16 3 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 4 C 0.51 14.48 6.84 87.66 0.60 15.08 16 5 O -0.58 -21.32 15.61 3.23 0.05 -21.27 16 6 N -0.71 -19.23 4.27 -463.08 -1.98 -21.21 16 7 C 0.01 0.44 2.68 86.38 0.23 0.67 16 8 C -0.08 -2.56 2.80 -10.46 -0.03 -2.59 16 9 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 10 C -0.11 -4.16 5.37 30.88 0.17 -3.99 16 11 C 0.14 5.67 4.31 45.30 0.20 5.87 16 12 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 13 C -0.15 -5.34 5.70 31.45 0.18 -5.16 16 14 C -0.16 -6.21 5.72 31.58 0.18 -6.03 16 15 C 0.18 8.37 3.10 45.43 0.14 8.51 16 16 H 0.04 2.31 7.31 -2.39 -0.02 2.29 16 17 C -0.10 -3.96 5.11 31.11 0.16 -3.80 16 18 N -0.60 -29.80 2.76 -637.93 -1.76 -31.56 16 19 C -0.25 -13.86 10.29 84.04 0.86 -13.00 16 20 H 0.06 3.22 7.83 -2.91 -0.02 3.20 16 21 C -0.03 -1.86 5.48 84.86 0.47 -1.40 16 22 N -0.92 -51.51 10.29 21.65 0.22 -51.29 16 23 Si 0.96 44.55 29.56 68.60 2.03 46.58 16 24 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 C 0.09 1.88 2.45 31.10 0.08 1.96 16 28 H 0.05 1.35 7.90 -2.39 -0.02 1.33 16 29 C -0.15 -1.92 6.47 31.61 0.20 -1.72 16 30 C -0.15 -1.73 7.09 31.61 0.22 -1.51 16 31 C 0.03 0.57 7.63 72.48 0.55 1.12 16 32 O -0.39 -9.78 9.92 -142.70 -1.42 -11.20 16 33 H 0.05 1.03 7.50 -2.39 -0.02 1.02 16 34 H 0.07 1.01 7.56 -2.39 -0.02 0.99 16 35 H 0.09 1.05 6.39 -2.39 -0.02 1.03 16 36 H 0.40 9.25 6.73 -92.71 -0.62 8.63 16 37 H 0.18 6.01 1.11 -110.00 -0.12 5.89 16 38 H 0.04 1.43 7.99 -2.39 -0.02 1.41 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 41 H 0.11 3.53 4.83 -2.38 -0.01 3.52 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.11 3.79 3.95 -2.39 -0.01 3.78 16 44 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.05 2.31 7.02 -2.39 -0.02 2.29 16 46 H 0.05 1.88 6.72 -2.39 -0.02 1.86 16 47 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 48 H 0.09 0.96 6.11 -2.39 -0.01 0.95 16 49 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 50 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 53 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -68.80 380.98 2.12 -66.67 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: 0.17 Total: 32.97 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 4.80 Total: -9.71 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -3.51 Total: -104.05 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.37 Total: -32.47 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -68.80 2.12 -66.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271744112.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.959 kcal (2) G-P(sol) polarization free energy of solvation -68.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds