Wall clock time and date at job start Tue Mar 31 2020 20:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46772 * 2 1 4 4 O 1.42895 * 109.46919 * 120.00201 * 2 1 3 5 5 C 1.42903 * 113.99598 * 269.99534 * 4 2 1 6 6 C 1.53003 * 109.47250 * 179.97438 * 5 4 2 7 7 C 1.52991 * 117.50138 * 243.75390 * 6 5 4 8 8 C 1.53000 * 117.50157 * 175.08824 * 6 5 4 9 9 C 1.50702 * 109.46960 * 240.00065 * 2 1 3 10 10 O 1.21279 * 119.99791 * 245.00027 * 9 2 1 11 11 N 1.34778 * 120.00276 * 65.00050 * 9 2 1 12 12 C 1.46934 * 120.69804 * 0.02562 * 11 9 2 13 13 C 1.53184 * 108.91990 * 125.81012 * 12 11 9 14 14 C 1.53167 * 109.27422 * 55.23190 * 13 12 11 15 15 C 1.52236 * 109.62743 * 299.83963 * 14 13 12 16 16 C 1.54506 * 110.25407 * 297.03684 * 15 14 13 17 17 C 1.55030 * 101.52133 * 276.23463 * 16 15 14 18 18 N 1.47483 * 104.89965 * 323.63954 * 17 16 15 19 19 C 1.36936 * 125.65715 * 204.02633 * 18 17 16 20 20 H 1.08001 * 119.99686 * 179.97438 * 19 18 17 21 21 C 1.38805 * 120.00173 * 359.97438 * 19 18 17 22 22 N 1.31616 * 120.00249 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99982 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47031 * 90.00149 * 23 21 19 25 25 H 1.48503 * 109.47390 * 209.99905 * 23 21 19 26 26 H 1.48500 * 109.47384 * 330.00281 * 23 21 19 27 27 C 1.47187 * 108.67901 * 24.01024 * 18 17 16 28 28 C 1.47082 * 120.70077 * 179.97438 * 11 9 2 29 29 H 1.09006 * 109.47055 * 60.00427 * 1 2 3 30 30 H 1.09002 * 109.46772 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47366 * 300.00221 * 1 2 3 32 32 H 1.08994 * 109.47862 * 300.00599 * 5 4 2 33 33 H 1.09000 * 109.46943 * 60.00449 * 5 4 2 34 34 H 1.09007 * 115.54387 * 29.41848 * 6 5 4 35 35 H 1.09000 * 117.50328 * 359.97438 * 7 6 5 36 36 H 1.08999 * 117.50132 * 145.02247 * 7 6 5 37 37 H 1.09000 * 117.49986 * 214.97968 * 8 6 5 38 38 H 1.09002 * 117.49429 * 359.97438 * 8 6 5 39 39 H 1.08996 * 109.56427 * 5.97800 * 12 11 9 40 40 H 1.09004 * 109.55660 * 245.63930 * 12 11 9 41 41 H 1.09007 * 109.50567 * 295.29317 * 13 12 11 42 42 H 1.08997 * 109.50739 * 175.17529 * 13 12 11 43 43 H 1.09002 * 109.43905 * 59.87890 * 14 13 12 44 44 H 1.08999 * 109.44400 * 179.80159 * 14 13 12 45 45 H 1.09004 * 111.01148 * 34.29410 * 16 15 14 46 46 H 1.08998 * 111.01569 * 158.17080 * 16 15 14 47 47 H 1.09001 * 110.34871 * 204.78283 * 17 16 15 48 48 H 1.09004 * 110.44435 * 82.54096 * 17 16 15 49 49 H 0.97003 * 120.00304 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.91053 * 239.12486 * 27 18 17 51 51 H 1.09001 * 109.91340 * 117.85726 * 27 18 17 52 52 H 1.09001 * 109.57489 * 352.27272 * 28 11 9 53 53 H 1.08994 * 109.57660 * 112.65912 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1830 2.2940 6 6 2.7079 -0.6407 3.4792 7 6 1.8105 -0.7276 4.7153 8 6 3.0877 0.1153 4.7540 9 6 2.0323 -0.7104 -1.2305 10 8 2.6529 -1.7467 -1.1215 11 7 1.7919 -0.1942 -2.4521 12 6 1.0422 1.0606 -2.6019 13 6 1.8741 2.0397 -3.4360 14 6 2.2449 1.3808 -4.7681 15 6 3.0597 0.1218 -4.5065 16 6 4.3897 0.4811 -3.8070 17 6 5.2815 0.8647 -5.0157 18 7 4.8789 -0.0593 -6.0924 19 6 5.6534 -0.4265 -7.1603 20 1 5.2652 -1.1129 -7.8982 21 6 6.9374 0.0835 -7.2944 22 7 7.4104 0.9203 -6.3954 23 14 7.9942 -0.4180 -8.7508 24 1 7.7692 0.5268 -9.8742 25 1 9.4259 -0.3874 -8.3576 26 1 7.6276 -1.7920 -9.1787 27 6 3.5067 -0.5216 -5.8283 28 6 2.2755 -0.8744 -3.6632 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.9319 0.9514 2.0450 33 1 1.2538 0.6547 2.5588 34 1 3.2967 -1.5212 3.2218 35 1 0.8585 -0.1976 4.6844 36 1 1.8093 -1.6650 5.2715 37 1 3.9262 -0.2679 5.3355 38 1 2.9763 1.1996 4.7481 39 1 0.8498 1.4904 -1.6189 40 1 0.0967 0.8626 -3.1069 41 1 2.7829 2.2995 -2.8931 42 1 1.2924 2.9418 -3.6256 43 1 1.3354 1.1186 -5.3087 44 1 2.8341 2.0766 -5.3654 45 1 4.2603 1.3275 -3.1324 46 1 4.7979 -0.3798 -3.2775 47 1 6.3341 0.7246 -4.7696 48 1 5.0964 1.8969 -5.3130 49 1 8.3078 1.2764 -6.4889 50 1 3.4921 -1.6076 -5.7361 51 1 2.8467 -0.2062 -6.6364 52 1 2.9233 -1.7046 -3.3818 53 1 1.4266 -1.2487 -4.2354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273833132.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:04 Heat of formation + Delta-G solvation = -43.566710 kcal Electronic energy + Delta-G solvation = -30647.571348 eV Core-core repulsion = 26713.175946 eV Total energy + Delta-G solvation = -3934.395401 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.79633 -40.20467 -39.06781 -37.48689 -37.29506 -34.94158 -33.22165 -32.70713 -31.43813 -30.36409 -28.07734 -27.44202 -26.90904 -25.49847 -24.28861 -23.27711 -23.19847 -22.03099 -21.75185 -20.55126 -19.55738 -18.69335 -18.53522 -17.68469 -17.22029 -16.92126 -16.47204 -16.41112 -16.21035 -15.87636 -15.45806 -15.27697 -14.89611 -14.76574 -14.69592 -14.38064 -14.17703 -13.86135 -13.79009 -13.56152 -13.44204 -13.27472 -12.98810 -12.89774 -12.77893 -12.66156 -12.38381 -12.31187 -12.18438 -12.06540 -11.98095 -11.89118 -11.65818 -11.48299 -11.43276 -11.34602 -11.26076 -11.12276 -10.75371 -10.71153 -10.37494 -9.60396 -8.89904 -7.78867 -5.23053 1.43684 1.46318 1.54788 1.55766 1.71247 2.47884 2.64477 2.96920 3.30058 3.41953 3.61608 3.66530 3.80707 3.84307 3.89633 3.94194 3.97386 4.02629 4.13280 4.15206 4.24179 4.29954 4.31964 4.47319 4.48708 4.54432 4.62275 4.69335 4.72073 4.73023 4.76661 4.77889 4.83770 4.87305 4.90090 4.92812 4.97374 5.01085 5.16533 5.20611 5.23198 5.24239 5.24934 5.41996 5.48530 5.50432 5.52091 5.62969 5.80223 6.12138 6.28316 6.44369 7.08922 7.16070 7.76815 8.41622 9.23240 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017006 B = 0.002558 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.088815 B =10945.015133 C =11811.652270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.075 3.925 3 H 0.111 0.889 4 O -0.389 6.389 5 C 0.089 3.911 6 C -0.180 4.180 7 C -0.170 4.170 8 C -0.163 4.163 9 C 0.506 3.494 10 O -0.582 6.582 11 N -0.599 5.599 12 C 0.097 3.903 13 C -0.132 4.132 14 C -0.097 4.097 15 C -0.068 4.068 16 C -0.114 4.114 17 C 0.163 3.837 18 N -0.626 5.626 19 C -0.238 4.238 20 H 0.081 0.919 21 C -0.071 4.071 22 N -0.950 5.950 23 Si 0.982 3.018 24 H -0.283 1.283 25 H -0.294 1.294 26 H -0.271 1.271 27 C 0.142 3.858 28 C 0.138 3.862 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.031 0.969 47 H 0.061 0.939 48 H -0.006 1.006 49 H 0.246 0.754 50 H 0.018 0.982 51 H 0.035 0.965 52 H 0.056 0.944 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.427 5.798 19.004 28.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.014 3.986 3 H 0.129 0.871 4 O -0.308 6.308 5 C 0.014 3.986 6 C -0.199 4.199 7 C -0.207 4.207 8 C -0.200 4.200 9 C 0.294 3.706 10 O -0.461 6.461 11 N -0.332 5.332 12 C -0.024 4.024 13 C -0.169 4.169 14 C -0.134 4.134 15 C -0.069 4.069 16 C -0.152 4.152 17 C 0.038 3.962 18 N -0.352 5.352 19 C -0.367 4.367 20 H 0.099 0.901 21 C -0.263 4.263 22 N -0.600 5.600 23 Si 0.810 3.190 24 H -0.210 1.210 25 H -0.221 1.221 26 H -0.195 1.195 27 C 0.017 3.983 28 C 0.015 3.985 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.127 0.873 43 H 0.102 0.898 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.050 0.950 47 H 0.079 0.921 48 H 0.011 0.989 49 H 0.056 0.944 50 H 0.036 0.964 51 H 0.053 0.947 52 H 0.075 0.925 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.894 5.075 18.993 27.969 hybrid contribution 1.519 -0.403 -1.106 1.922 sum -18.375 4.672 17.887 26.065 Atomic orbital electron populations 1.22415 0.90900 1.03725 1.05644 1.22004 0.96881 0.96314 0.83414 0.87104 1.88021 1.87001 1.35884 1.19924 1.22276 1.00332 0.91698 0.84334 1.22122 1.05653 1.02664 0.89421 1.23174 0.95496 1.02474 0.99555 1.23089 0.99347 0.99606 0.97927 1.21154 0.78907 0.85111 0.85396 1.90697 1.42283 1.26301 1.86780 1.48124 1.55061 1.25592 1.04472 1.22344 0.94985 0.82162 1.02886 1.22017 1.00761 0.99130 0.95034 1.21326 0.99153 0.94599 0.98358 1.21219 0.94958 0.96750 0.93966 1.22784 0.95623 0.99723 0.97103 1.21613 0.98475 0.90284 0.85782 1.44835 1.12089 1.52406 1.25850 1.19470 0.95187 1.21783 1.00234 0.90146 1.25667 0.98784 1.00003 1.01821 1.70087 1.16928 1.36284 1.36746 0.85027 0.77483 0.78087 0.78434 1.21001 1.22083 1.19543 1.21377 0.86004 0.95979 0.94944 1.21255 0.98259 0.94084 0.84899 0.87899 0.92771 0.88863 0.92362 0.90407 0.89340 0.87231 0.88500 0.88061 0.87095 0.86619 0.88073 0.92406 0.87256 0.89822 0.93449 0.90323 0.94976 0.92135 0.98856 0.94425 0.96439 0.94733 0.92498 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.10 71.98 0.66 -1.43 16 2 C 0.07 1.49 2.30 29.85 0.07 1.56 16 3 H 0.11 1.57 7.09 -2.39 -0.02 1.56 16 4 O -0.39 -9.90 9.53 -129.99 -1.24 -11.13 16 5 C 0.09 1.55 6.03 71.98 0.43 1.98 16 6 C -0.18 -3.24 6.05 -10.80 -0.07 -3.31 16 7 C -0.17 -2.20 10.18 30.62 0.31 -1.89 16 8 C -0.16 -2.04 10.26 30.62 0.31 -1.72 16 9 C 0.51 14.77 7.12 87.66 0.62 15.39 16 10 O -0.58 -23.98 15.93 15.96 0.25 -23.73 16 11 N -0.60 -14.62 2.83 -820.27 -2.32 -16.94 16 12 C 0.10 1.36 4.98 86.36 0.43 1.79 16 13 C -0.13 -2.31 5.90 30.71 0.18 -2.13 16 14 C -0.10 -2.52 4.55 30.40 0.14 -2.38 16 15 C -0.07 -2.28 0.55 -51.95 -0.03 -2.31 16 16 C -0.11 -4.65 5.73 31.80 0.18 -4.47 16 17 C 0.16 8.47 5.57 86.89 0.48 8.96 16 18 N -0.63 -33.66 3.40 -692.50 -2.36 -36.02 16 19 C -0.24 -13.86 10.28 84.03 0.86 -12.99 16 20 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 21 C -0.07 -4.15 5.49 84.86 0.47 -3.69 16 22 N -0.95 -58.79 10.09 21.65 0.22 -58.57 16 23 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 24 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 27 C 0.14 6.04 6.43 86.47 0.56 6.60 16 28 C 0.14 4.18 4.97 86.03 0.43 4.61 16 29 H 0.10 0.75 5.41 -2.38 -0.01 0.74 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.71 7.87 -2.39 -0.02 0.70 16 32 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 33 H 0.08 0.89 7.60 -2.39 -0.02 0.87 16 34 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.11 1.08 8.03 -2.39 -0.02 1.06 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.12 0.93 4.64 -2.39 -0.01 0.92 16 40 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.06 1.21 6.22 -2.38 -0.01 1.20 16 42 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.05 1.51 7.49 -2.39 -0.02 1.49 16 45 H 0.08 2.83 6.00 -2.38 -0.01 2.82 16 46 H 0.03 1.46 7.90 -2.39 -0.02 1.44 16 47 H 0.06 3.65 5.88 -2.39 -0.01 3.64 16 48 H -0.01 -0.35 7.76 -2.38 -0.02 -0.37 16 49 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 50 H 0.02 0.76 7.80 -2.39 -0.02 0.74 16 51 H 0.03 1.39 7.83 -2.39 -0.02 1.38 16 52 H 0.06 2.17 6.87 -2.39 -0.02 2.15 16 53 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -81.69 400.02 3.51 -78.18 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.88 Total: 14.41 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 6.04 Total: 4.56 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -4.45 Total: -111.53 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.98 Total: -34.86 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -81.69 3.51 -78.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273833132.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.613 kcal (2) G-P(sol) polarization free energy of solvation -81.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds