Wall clock time and date at job start Tue Mar 31 2020 20:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 O 1.42906 * 109.46748 * 239.99822 * 2 1 3 5 5 C 1.42903 * 113.99577 * 90.00295 * 4 2 1 6 6 C 1.52993 * 109.47005 * 180.02562 * 5 4 2 7 7 C 1.53005 * 117.50056 * 243.74693 * 6 5 4 8 8 C 1.53001 * 117.50410 * 175.08666 * 6 5 4 9 9 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 10 10 O 1.21278 * 120.00443 * 114.99720 * 9 2 1 11 11 N 1.34786 * 119.99896 * 294.99954 * 9 2 1 12 12 C 1.46940 * 120.70028 * 359.71961 * 11 9 2 13 13 C 1.52717 * 109.17697 * 234.12260 * 12 11 9 14 14 C 1.53163 * 109.35562 * 305.01992 * 13 12 11 15 15 C 1.52232 * 109.65403 * 60.03759 * 14 13 12 16 16 C 1.54486 * 110.29354 * 178.01249 * 15 14 13 17 17 C 1.55022 * 101.53074 * 276.20803 * 16 15 14 18 18 N 1.47485 * 104.90743 * 323.65117 * 17 16 15 19 19 C 1.36938 * 125.66623 * 203.99156 * 18 17 16 20 20 H 1.08001 * 120.00152 * 180.02562 * 19 18 17 21 21 C 1.38805 * 119.99767 * 0.02562 * 19 18 17 22 22 N 1.31625 * 120.00372 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00208 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46703 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47159 * 119.99948 * 23 21 19 26 26 H 1.48498 * 109.47206 * 240.00223 * 23 21 19 27 27 C 1.47193 * 108.67413 * 24.01115 * 18 17 16 28 28 C 1.47074 * 120.70505 * 180.02562 * 11 9 2 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46805 * 299.99656 * 5 4 2 33 33 H 1.09000 * 109.47333 * 59.99541 * 5 4 2 34 34 H 1.09001 * 115.55334 * 29.41078 * 6 5 4 35 35 H 1.09000 * 117.49361 * 359.97438 * 7 6 5 36 36 H 1.08997 * 117.50377 * 145.01477 * 7 6 5 37 37 H 1.08993 * 117.50443 * 214.97928 * 8 6 5 38 38 H 1.09004 * 117.49555 * 359.97116 * 8 6 5 39 39 H 1.08997 * 109.56409 * 354.00739 * 12 11 9 40 40 H 1.09002 * 109.55895 * 114.34321 * 12 11 9 41 41 H 1.08999 * 109.57476 * 184.98670 * 13 12 11 42 42 H 1.09005 * 109.38740 * 64.93690 * 13 12 11 43 43 H 1.08999 * 109.43865 * 299.98120 * 14 13 12 44 44 H 1.09004 * 109.41204 * 180.02562 * 14 13 12 45 45 H 1.08999 * 111.00570 * 34.26974 * 16 15 14 46 46 H 1.08994 * 111.01403 * 158.14092 * 16 15 14 47 47 H 1.09000 * 110.35502 * 204.79576 * 17 16 15 48 48 H 1.08997 * 110.44769 * 82.55298 * 17 16 15 49 49 H 0.96996 * 120.00187 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.91147 * 239.10243 * 27 18 17 51 51 H 1.09002 * 109.90548 * 117.83263 * 27 18 17 52 52 H 1.09007 * 109.57402 * 247.32769 * 28 11 9 53 53 H 1.09000 * 109.58388 * 7.72266 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7077 -0.6408 -3.4792 7 6 4.1058 -0.3228 -4.0134 8 6 2.8684 0.0765 -4.8211 9 6 2.0324 -0.7105 1.2304 10 8 2.6530 -1.7467 1.1214 11 7 1.7920 -0.1942 2.4520 12 6 1.0470 1.0634 2.6017 13 6 1.8732 2.0397 3.4363 14 6 2.2444 1.3808 4.7682 15 6 3.0602 0.1223 4.5071 16 6 3.4852 -0.5274 5.8427 17 6 4.7601 0.2833 6.1898 18 7 5.4134 0.5371 4.8922 19 6 6.7457 0.7928 4.7055 20 1 7.1280 0.9668 3.7105 21 6 7.6049 0.8284 5.7951 22 7 7.1390 0.6169 7.0078 23 14 9.4225 1.1766 5.5405 24 1 9.6900 1.3774 4.0936 25 1 9.8014 2.4017 6.2892 26 1 10.2209 0.0267 6.0360 27 6 4.3956 0.4703 3.8310 28 6 2.2755 -0.8743 3.6631 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.2538 0.6546 -2.5588 33 1 2.9319 0.9513 -2.0450 34 1 2.3857 -1.6819 -3.5005 35 1 4.6637 0.4735 -3.5206 36 1 4.7034 -1.1546 -4.3863 37 1 2.6524 -0.4926 -5.7251 38 1 2.6119 1.1353 -4.8597 39 1 0.8582 1.4950 1.6187 40 1 0.0997 0.8688 3.1047 41 1 1.2910 2.9414 3.6261 42 1 2.7818 2.3007 2.8936 43 1 1.3352 1.1181 5.3089 44 1 2.8338 2.0770 5.3649 45 1 2.7171 -0.3932 6.6043 46 1 3.7184 -1.5834 5.7068 47 1 5.4157 -0.2997 6.8367 48 1 4.4937 1.2246 6.6706 49 1 7.7395 0.6414 7.7692 50 1 4.6601 -0.3041 3.1111 51 1 4.3177 1.4354 3.3303 52 1 1.4265 -1.2485 4.2355 53 1 2.9233 -1.7046 3.3820 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273833135.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:19 Heat of formation + Delta-G solvation = -44.701790 kcal Electronic energy + Delta-G solvation = -30855.743764 eV Core-core repulsion = 26921.299142 eV Total energy + Delta-G solvation = -3934.444622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.79874 -40.20531 -39.07868 -37.50144 -37.30014 -34.97977 -33.23661 -32.72200 -31.68747 -30.01075 -28.10833 -27.55792 -26.91020 -25.54135 -24.28326 -23.28240 -23.14573 -22.14220 -21.77344 -20.56542 -19.34998 -18.91737 -18.53670 -17.67115 -17.10209 -16.94493 -16.80588 -16.40652 -16.01878 -15.89438 -15.55249 -15.23007 -15.15812 -14.67995 -14.55433 -14.32777 -14.20449 -13.89986 -13.80014 -13.55145 -13.42766 -13.30535 -13.09039 -12.83294 -12.71023 -12.62813 -12.40655 -12.28090 -12.19560 -12.08209 -11.99754 -11.99215 -11.69902 -11.58884 -11.42328 -11.32073 -11.27241 -11.13488 -10.77808 -10.75440 -10.35384 -9.60503 -8.90788 -7.81464 -5.25282 1.41082 1.42934 1.53061 1.54172 1.72186 2.45332 2.61730 2.95664 3.26854 3.40593 3.62793 3.65123 3.80282 3.84923 3.87120 3.92989 3.95258 4.04838 4.11142 4.12463 4.19689 4.30614 4.31492 4.45211 4.53208 4.54044 4.63247 4.64779 4.71932 4.72600 4.75241 4.76995 4.79344 4.85635 4.88543 4.95727 4.98625 5.04635 5.16354 5.18832 5.21195 5.22770 5.24574 5.39344 5.46966 5.49784 5.52257 5.65948 5.80778 6.09959 6.28559 6.42889 7.08375 7.15149 7.75180 8.39471 9.20228 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010995 B = 0.003217 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.896988 B = 8701.242198 C =10533.706056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.074 3.926 3 H 0.106 0.894 4 O -0.389 6.389 5 C 0.088 3.912 6 C -0.172 4.172 7 C -0.193 4.193 8 C -0.148 4.148 9 C 0.504 3.496 10 O -0.582 6.582 11 N -0.602 5.602 12 C 0.099 3.901 13 C -0.135 4.135 14 C -0.096 4.096 15 C -0.070 4.070 16 C -0.122 4.122 17 C 0.159 3.841 18 N -0.626 5.626 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.064 4.064 22 N -0.945 5.945 23 Si 0.979 3.021 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.289 1.289 27 C 0.155 3.845 28 C 0.137 3.863 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.045 0.955 43 H 0.094 0.906 44 H 0.046 0.954 45 H 0.097 0.903 46 H 0.053 0.947 47 H 0.067 0.933 48 H -0.005 1.005 49 H 0.248 0.752 50 H -0.011 1.011 51 H 0.021 0.979 52 H 0.099 0.901 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.049 4.699 -16.418 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 H 0.124 0.876 4 O -0.308 6.308 5 C 0.012 3.988 6 C -0.190 4.190 7 C -0.230 4.230 8 C -0.185 4.185 9 C 0.293 3.707 10 O -0.461 6.461 11 N -0.336 5.336 12 C -0.022 4.022 13 C -0.173 4.173 14 C -0.134 4.134 15 C -0.071 4.071 16 C -0.161 4.161 17 C 0.034 3.966 18 N -0.352 5.352 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.256 4.256 22 N -0.595 5.595 23 Si 0.807 3.193 24 H -0.197 1.197 25 H -0.212 1.212 26 H -0.216 1.216 27 C 0.030 3.970 28 C 0.014 3.986 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.065 0.935 45 H 0.115 0.885 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.013 0.987 49 H 0.058 0.942 50 H 0.007 0.993 51 H 0.039 0.961 52 H 0.117 0.883 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.515 3.988 -16.408 26.570 hybrid contribution 1.937 0.018 0.263 1.955 sum -18.578 4.006 -16.145 24.937 Atomic orbital electron populations 1.22404 0.90597 1.03842 1.05687 1.22008 0.97080 0.96105 0.83493 0.87611 1.88016 1.87014 1.35807 1.19946 1.22293 1.00548 0.91660 0.84288 1.22137 1.01258 1.00842 0.94776 1.23161 0.91170 1.03865 1.04800 1.23081 1.00087 1.01815 0.93481 1.21157 0.78901 0.85151 0.85499 1.90692 1.42192 1.26403 1.86796 1.48186 1.55277 1.25446 1.04645 1.22227 0.95157 0.82072 1.02747 1.21934 1.00425 0.99395 0.95520 1.21330 0.99411 0.94505 0.98110 1.21279 0.93754 0.97007 0.95077 1.22860 0.98200 0.98580 0.96457 1.21692 0.91544 0.95559 0.87793 1.44884 1.03637 1.83285 1.03395 1.19406 0.83931 1.40457 0.93343 0.91326 1.25595 1.02429 1.02553 0.95046 1.70060 1.34153 1.57206 0.98097 0.85010 0.79654 0.77153 0.77518 1.19697 1.21200 1.21623 1.21328 0.88880 0.96186 0.90631 1.21379 0.98411 0.94036 0.84767 0.87846 0.88849 0.92554 0.89990 0.92965 0.88195 0.88886 0.88720 0.87159 0.87035 0.87018 0.87513 0.87161 0.93584 0.88729 0.93511 0.88466 0.92772 0.91537 0.98692 0.94195 0.99314 0.96117 0.88342 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 9.10 71.98 0.66 -1.55 16 2 C 0.07 1.60 2.30 29.85 0.07 1.67 16 3 H 0.11 1.77 7.08 -2.39 -0.02 1.75 16 4 O -0.39 -10.45 9.53 -129.99 -1.24 -11.69 16 5 C 0.09 1.65 6.03 71.98 0.43 2.09 16 6 C -0.17 -3.25 6.05 -10.79 -0.07 -3.32 16 7 C -0.19 -3.46 10.18 30.62 0.31 -3.14 16 8 C -0.15 -1.91 10.25 30.62 0.31 -1.60 16 9 C 0.50 15.55 7.12 87.65 0.62 16.18 16 10 O -0.58 -24.92 15.93 15.97 0.25 -24.67 16 11 N -0.60 -15.41 2.86 -820.98 -2.35 -17.76 16 12 C 0.10 1.49 4.94 86.20 0.43 1.92 16 13 C -0.13 -2.61 5.89 30.55 0.18 -2.43 16 14 C -0.10 -2.48 4.59 30.39 0.14 -2.34 16 15 C -0.07 -2.36 0.53 -51.92 -0.03 -2.38 16 16 C -0.12 -4.58 5.99 31.79 0.19 -4.39 16 17 C 0.16 8.04 5.57 86.88 0.48 8.53 16 18 N -0.63 -34.43 3.40 -692.47 -2.36 -36.78 16 19 C -0.24 -14.56 10.28 84.03 0.86 -13.70 16 20 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.06 -3.77 5.49 84.86 0.47 -3.30 16 22 N -0.95 -57.93 10.09 21.65 0.22 -57.71 16 23 Si 0.98 47.73 29.55 68.60 2.03 49.76 16 24 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 C 0.15 7.04 6.14 86.47 0.53 7.57 16 28 C 0.14 4.13 5.00 86.06 0.43 4.56 16 29 H 0.10 0.83 5.43 -2.39 -0.01 0.81 16 30 H 0.09 0.79 7.87 -2.39 -0.02 0.78 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.04 7.87 -2.39 -0.02 1.02 16 33 H 0.05 0.95 7.82 -2.39 -0.02 0.93 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.09 1.69 8.03 -2.39 -0.02 1.68 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.11 1.09 4.66 -2.39 -0.01 1.07 16 40 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 1.16 6.34 -2.38 -0.02 1.14 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.49 7.52 -2.38 -0.02 1.47 16 45 H 0.10 2.94 8.01 -2.39 -0.02 2.92 16 46 H 0.05 2.11 8.01 -2.39 -0.02 2.09 16 47 H 0.07 3.88 5.88 -2.39 -0.01 3.86 16 48 H 0.00 -0.26 7.78 -2.39 -0.02 -0.28 16 49 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 50 H -0.01 -0.57 7.66 -2.39 -0.02 -0.59 16 51 H 0.02 0.94 6.01 -2.39 -0.01 0.93 16 52 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 53 H 0.05 2.10 6.82 -2.39 -0.02 2.08 16 Total: -1.00 -83.22 400.36 3.47 -79.75 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.88 Total: 14.75 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 6.02 Total: 4.35 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -4.49 Total: -112.25 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.98 Total: -36.35 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -83.22 3.47 -79.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273833135.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.053 kcal (2) G-P(sol) polarization free energy of solvation -83.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds