Wall clock time and date at job start Tue Mar 31 2020 20:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20762 * 120.00248 * 2 1 4 4 C 1.50706 * 120.00035 * 179.97438 * 2 1 3 5 5 H 1.09000 * 109.46859 * 320.00253 * 4 2 1 6 6 C 1.52994 * 109.47217 * 80.00163 * 4 2 1 7 7 N 1.46504 * 109.47039 * 200.00108 * 4 2 1 8 8 C 1.46797 * 124.33180 * 119.97377 * 7 4 2 9 9 C 1.54446 * 105.41858 * 197.07640 * 8 7 4 10 10 C 1.54845 * 101.80753 * 334.27990 * 9 8 7 11 11 C 1.54736 * 107.59193 * 270.64224 * 10 9 8 12 12 C 1.50451 * 109.01304 * 159.69960 * 11 10 9 13 13 C 1.53950 * 113.07160 * 91.61742 * 12 11 10 14 14 N 1.47923 * 113.33675 * 317.63367 * 13 12 11 15 15 C 1.46903 * 110.99822 * 192.34478 * 14 13 12 16 16 C 1.53001 * 109.46836 * 297.26289 * 15 14 13 17 17 C 1.50704 * 109.46810 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99860 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99978 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99734 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00050 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47012 * 89.99670 * 21 19 17 23 23 H 1.48491 * 109.47115 * 210.00028 * 21 19 17 24 24 H 1.48502 * 109.46872 * 330.00123 * 21 19 17 25 25 C 1.44319 * 113.53432 * 318.20769 * 14 13 12 26 26 C 1.46025 * 112.26952 * 147.43972 * 10 9 8 27 27 C 1.34368 * 124.34956 * 299.97745 * 7 4 2 28 28 O 1.21276 * 124.91605 * 359.80707 * 27 7 4 29 29 H 1.09001 * 109.47311 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47320 * 300.00073 * 1 2 3 31 31 H 1.09002 * 109.47083 * 60.00205 * 1 2 3 32 32 H 1.09007 * 109.47061 * 299.99912 * 6 4 2 33 33 H 1.09003 * 109.47126 * 59.99717 * 6 4 2 34 34 H 1.08995 * 109.47720 * 180.02562 * 6 4 2 35 35 H 1.08997 * 110.24253 * 78.10790 * 8 7 4 36 36 H 1.09002 * 110.29077 * 316.07406 * 8 7 4 37 37 H 1.09002 * 110.97010 * 216.13720 * 9 8 7 38 38 H 1.09003 * 110.96545 * 92.41630 * 9 8 7 39 39 H 1.08999 * 109.54780 * 279.55764 * 11 10 9 40 40 H 1.09001 * 109.54705 * 39.84211 * 11 10 9 41 41 H 1.08997 * 108.76815 * 330.69112 * 12 11 10 42 42 H 1.09008 * 108.67048 * 212.47513 * 12 11 10 43 43 H 1.08998 * 108.70815 * 196.64171 * 13 12 11 44 44 H 1.08991 * 108.71177 * 78.62916 * 13 12 11 45 45 H 1.09003 * 109.47091 * 57.25811 * 15 14 13 46 46 H 1.08993 * 109.46954 * 177.25982 * 15 14 13 47 47 H 1.09001 * 109.47207 * 299.99225 * 16 15 14 48 48 H 1.08993 * 109.47599 * 60.00088 * 16 15 14 49 49 H 0.97003 * 119.99704 * 179.97438 * 20 19 17 50 50 H 1.09005 * 109.70458 * 335.82675 * 25 14 13 51 51 H 1.08997 * 109.70621 * 215.20964 * 25 14 13 52 52 H 1.08999 * 108.81218 * 303.00411 * 26 10 9 53 53 H 1.08999 * 108.81186 * 61.39487 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7603 -2.0131 0.6614 6 6 2.2986 -1.8727 -1.4197 7 7 3.6287 -1.0789 0.4729 8 6 4.2121 -1.7195 1.6579 9 6 5.4581 -0.8770 2.0087 10 6 5.8227 -0.2633 0.6346 11 6 6.7850 -1.2451 -0.0755 12 6 6.7707 -0.9628 -1.5533 13 6 7.8535 0.0423 -1.9860 14 7 7.9913 1.1892 -1.0621 15 6 8.8130 2.2505 -1.6592 16 6 10.2269 1.7215 -1.9084 17 6 11.0700 2.8104 -2.5204 18 1 10.6405 3.7826 -2.7120 19 6 12.3900 2.5658 -2.8347 20 7 13.1256 3.5159 -3.3692 21 14 13.1335 0.8849 -2.5014 22 1 12.9476 0.0165 -3.6916 23 1 14.5836 1.0324 -2.2179 24 1 12.4601 0.2694 -1.3296 25 6 6.7280 1.7117 -0.5996 26 6 6.4091 1.0680 0.7612 27 6 4.5105 -0.2584 -0.1227 28 8 4.2881 0.3919 -1.1220 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.2806 -2.0411 -1.7711 33 1 2.7987 -1.1647 -2.0806 34 1 2.8432 -2.8168 -1.4193 35 1 4.5024 -2.7446 1.4279 36 1 3.5014 -1.7042 2.4843 37 1 6.2646 -1.5093 2.3799 38 1 5.2118 -0.0983 2.7306 39 1 7.7949 -1.1101 0.3117 40 1 6.4583 -2.2695 0.1032 41 1 5.7934 -0.5636 -1.8246 42 1 6.9273 -1.8991 -2.0889 43 1 7.6037 0.4201 -2.9774 44 1 8.8099 -0.4772 -2.0434 45 1 8.3705 2.5640 -2.6047 46 1 8.8579 3.1012 -0.9792 47 1 10.6694 1.4080 -0.9629 48 1 10.1820 0.8708 -2.5883 49 1 14.0543 3.3439 -3.5901 50 1 5.9440 1.4649 -1.3156 51 1 6.7966 2.7937 -0.4874 52 1 5.7110 1.7099 1.2986 53 1 7.3313 0.9926 1.3372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038370.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:26 Heat of formation + Delta-G solvation = -80.548107 kcal Electronic energy + Delta-G solvation = -31509.473471 eV Core-core repulsion = 27573.474436 eV Total energy + Delta-G solvation = -3935.999035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.55025 -40.50566 -39.05562 -37.47507 -36.42724 -35.06474 -33.82198 -33.18028 -31.97132 -30.63755 -29.34890 -27.79739 -26.80479 -25.79178 -25.22376 -23.46631 -22.41871 -22.34799 -20.83329 -20.54966 -19.34210 -19.01757 -17.88066 -17.24486 -17.13940 -16.70237 -16.55688 -16.34079 -15.99952 -15.68987 -15.38675 -15.24739 -14.92325 -14.74447 -14.70940 -14.48792 -14.28167 -14.00355 -13.78371 -13.62829 -13.37755 -13.35541 -13.18069 -13.02057 -12.99538 -12.92709 -12.83059 -12.67564 -12.53611 -12.32282 -12.22531 -11.96281 -11.79495 -11.59860 -11.47202 -11.34893 -11.33219 -11.15208 -10.77518 -10.75386 -10.14893 -9.49297 -9.06299 -8.31077 -6.35909 0.99683 1.35089 1.37814 1.51775 1.74114 2.03948 2.36393 2.97894 3.04025 3.06597 3.39007 3.58174 3.71883 3.94815 3.95580 4.07965 4.13123 4.15216 4.18701 4.22258 4.31329 4.41174 4.45135 4.56497 4.60197 4.62155 4.64306 4.69384 4.73543 4.77054 4.81200 4.82589 4.88278 4.92005 4.96427 5.03428 5.08306 5.10867 5.15072 5.23032 5.26589 5.28292 5.31364 5.38418 5.45451 5.47408 5.61700 5.71464 6.14674 6.22708 6.30061 6.42843 6.60762 6.71308 7.28568 7.38308 8.86001 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023143 B = 0.002744 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.578114 B =10199.971569 C =10510.460996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.328 3.672 3 O -0.487 6.487 4 C 0.103 3.897 5 H 0.163 0.837 6 C -0.156 4.156 7 N -0.619 5.619 8 C 0.104 3.896 9 C -0.121 4.121 10 C -0.086 4.086 11 C -0.083 4.083 12 C -0.140 4.140 13 C 0.067 3.933 14 N -0.540 5.540 15 C 0.086 3.914 16 C 0.006 3.994 17 C -0.537 4.537 18 H 0.026 0.974 19 C 0.004 3.996 20 N -0.952 5.952 21 Si 0.956 3.044 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.244 1.244 25 C 0.046 3.954 26 C -0.080 4.080 27 C 0.526 3.474 28 O -0.546 6.546 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.005 0.995 44 H 0.066 0.934 45 H 0.003 0.997 46 H 0.059 0.941 47 H 0.027 0.973 48 H 0.016 0.984 49 H 0.267 0.733 50 H 0.058 0.942 51 H 0.046 0.954 52 H 0.053 0.947 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.031 -21.856 15.327 39.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.204 3.796 3 O -0.361 6.361 4 C -0.001 4.001 5 H 0.180 0.820 6 C -0.214 4.214 7 N -0.353 5.353 8 C -0.018 4.018 9 C -0.158 4.158 10 C -0.090 4.090 11 C -0.121 4.121 12 C -0.178 4.178 13 C -0.061 4.061 14 N -0.265 5.265 15 C -0.041 4.041 16 C -0.032 4.032 17 C -0.575 4.575 18 H 0.045 0.955 19 C -0.192 4.192 20 N -0.592 5.592 21 Si 0.779 3.221 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.167 1.167 25 C -0.082 4.082 26 C -0.118 4.118 27 C 0.315 3.685 28 O -0.424 6.424 29 H 0.138 0.862 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.135 0.865 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.023 0.977 44 H 0.084 0.916 45 H 0.021 0.979 46 H 0.077 0.923 47 H 0.046 0.954 48 H 0.034 0.966 49 H 0.076 0.924 50 H 0.076 0.924 51 H 0.064 0.936 52 H 0.072 0.928 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -28.538 -21.116 15.123 38.588 hybrid contribution 0.396 0.942 -1.454 1.777 sum -28.142 -20.174 13.669 37.227 Atomic orbital electron populations 1.22266 0.90751 1.07064 1.04988 1.25871 0.93976 0.90368 0.69387 1.90515 1.72989 1.36643 1.35939 1.21809 0.81943 0.96835 0.99470 0.81952 1.22005 1.04508 1.01195 0.93675 1.48352 1.11815 1.45371 1.29772 1.22390 0.95338 0.97246 0.86793 1.22880 0.98721 1.00185 0.94036 1.20464 0.93217 0.97587 0.97712 1.21330 0.99519 0.97908 0.93355 1.21688 0.99341 0.98363 0.98393 1.22350 0.99410 0.91952 0.92364 1.60906 1.16414 1.08578 1.40558 1.21892 0.93712 0.93006 0.95534 1.19394 0.92403 0.95193 0.96189 1.21426 0.96395 0.98590 1.41086 0.95546 1.26041 0.97419 1.01733 0.94040 1.70076 1.08699 1.35697 1.44746 0.85569 0.77380 0.79021 0.80166 1.19213 1.20586 1.16701 1.21965 0.90801 0.97398 0.98051 1.20134 1.00784 0.94405 0.96517 1.21036 0.86437 0.77476 0.83539 1.90572 1.80640 1.44129 1.27048 0.86211 0.88304 0.89398 0.88134 0.94948 0.89963 0.88393 0.87911 0.86508 0.90087 0.90107 0.88966 0.91375 0.90438 0.97700 0.91552 0.97904 0.92252 0.95449 0.96612 0.92382 0.92389 0.93566 0.92826 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.44 10.33 71.23 0.74 -0.70 16 2 C 0.33 5.63 6.42 29.10 0.19 5.81 16 3 O -0.49 -14.64 14.85 18.97 0.28 -14.36 16 4 C 0.10 1.20 3.12 44.24 0.14 1.34 16 5 H 0.16 0.23 8.07 -2.39 -0.02 0.21 16 6 C -0.16 -1.93 9.18 71.98 0.66 -1.27 16 7 N -0.62 -10.16 2.76 -797.95 -2.20 -12.36 16 8 C 0.10 0.85 7.02 86.81 0.61 1.46 16 9 C -0.12 -1.47 6.04 31.72 0.19 -1.28 16 10 C -0.09 -1.91 0.56 -53.59 -0.03 -1.94 16 11 C -0.08 -1.80 4.40 30.36 0.13 -1.67 16 12 C -0.14 -3.94 5.13 30.09 0.15 -3.79 16 13 C 0.07 2.41 4.79 86.43 0.41 2.82 16 14 N -0.54 -20.90 4.03 -896.43 -3.61 -24.51 16 15 C 0.09 4.00 4.74 86.30 0.41 4.41 16 16 C 0.01 0.31 3.89 29.85 0.12 0.42 16 17 C -0.54 -33.23 9.66 25.60 0.25 -32.98 16 18 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 19 C 0.00 0.27 5.47 84.66 0.46 0.73 16 20 N -0.95 -62.22 13.96 21.45 0.30 -61.92 16 21 Si 0.96 46.26 27.47 68.60 1.88 48.14 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.24 -10.98 6.54 99.48 0.65 -10.33 16 25 C 0.05 1.67 5.31 87.08 0.46 2.14 16 26 C -0.08 -2.25 4.24 28.75 0.12 -2.13 16 27 C 0.53 13.54 4.47 87.98 0.39 13.93 16 28 O -0.55 -19.29 10.18 17.41 0.18 -19.11 16 29 H 0.12 -0.07 8.00 -2.39 -0.02 -0.08 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.03 0.72 6.78 -2.39 -0.02 0.70 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.10 0.33 8.14 -2.39 -0.02 0.32 16 37 H 0.12 0.92 7.85 -2.39 -0.02 0.90 16 38 H 0.08 1.01 7.98 -2.39 -0.02 0.99 16 39 H 0.08 1.90 7.81 -2.39 -0.02 1.88 16 40 H 0.09 1.38 7.73 -2.39 -0.02 1.36 16 41 H 0.07 2.21 4.01 -2.39 -0.01 2.20 16 42 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.00 0.19 7.95 -2.39 -0.02 0.17 16 44 H 0.07 2.42 6.97 -2.39 -0.02 2.40 16 45 H 0.00 0.13 8.04 -2.39 -0.02 0.12 16 46 H 0.06 2.79 7.79 -2.39 -0.02 2.77 16 47 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 48 H 0.02 0.79 6.15 -2.39 -0.01 0.77 16 49 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 50 H 0.06 2.34 4.35 -2.38 -0.01 2.33 16 51 H 0.05 1.76 7.40 -2.39 -0.02 1.74 16 52 H 0.05 1.50 8.12 -2.39 -0.02 1.48 16 53 H 0.08 2.30 8.08 -2.39 -0.02 2.28 16 Total: -1.00 -88.21 392.34 3.06 -85.15 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.82 Total: 11.66 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 5.41 Total: -12.70 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -5.51 Total: -98.79 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: 0.46 Total: -33.47 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.88 Total: 48.14 kcal Total: -88.21 3.06 -85.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038370.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.602 kcal (2) G-P(sol) polarization free energy of solvation -88.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds