Wall clock time and date at job start Tue Mar 31 2020 20:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20772 * 119.99765 * 2 1 4 4 C 1.50701 * 120.00509 * 179.97438 * 2 1 3 5 5 H 1.09004 * 109.46698 * 320.00570 * 4 2 1 6 6 C 1.52997 * 109.46860 * 80.00133 * 4 2 1 7 7 N 1.46493 * 109.47225 * 200.00444 * 4 2 1 8 8 C 1.46782 * 124.35554 * 119.99994 * 7 4 2 9 9 C 1.54500 * 105.46909 * 162.94610 * 8 7 4 10 10 C 1.54553 * 101.74350 * 25.39185 * 9 8 7 11 11 C 1.50495 * 110.42209 * 94.55556 * 10 9 8 12 12 C 1.54601 * 108.84179 * 213.88842 * 11 10 9 13 13 C 1.45910 * 111.44098 * 283.17934 * 12 11 10 14 14 N 1.47706 * 113.05080 * 61.41519 * 13 12 11 15 15 C 1.46905 * 110.99821 * 153.50403 * 14 13 12 16 16 C 1.53001 * 109.47073 * 66.04437 * 15 14 13 17 17 C 1.50700 * 109.47068 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99674 * 179.97438 * 17 16 15 20 20 N 1.31505 * 120.00306 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99481 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47096 * 60.00416 * 21 19 17 23 23 H 1.48496 * 109.46917 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47248 * 300.00361 * 21 19 17 25 25 C 1.44293 * 109.44782 * 276.36359 * 14 13 12 26 26 C 1.54068 * 111.82604 * 96.47224 * 25 14 13 27 27 C 1.34450 * 124.35349 * 299.96840 * 7 4 2 28 28 O 1.21285 * 124.95198 * 0.51784 * 27 7 4 29 29 H 1.08993 * 109.47045 * 269.99869 * 1 2 3 30 30 H 1.09001 * 109.47004 * 30.00527 * 1 2 3 31 31 H 1.09002 * 109.46509 * 150.00040 * 1 2 3 32 32 H 1.09000 * 109.47249 * 60.00212 * 6 4 2 33 33 H 1.09000 * 109.47055 * 180.02562 * 6 4 2 34 34 H 1.09000 * 109.47398 * 300.00245 * 6 4 2 35 35 H 1.09000 * 110.24000 * 43.95167 * 8 7 4 36 36 H 1.08992 * 110.24390 * 281.94742 * 8 7 4 37 37 H 1.08994 * 110.97301 * 267.27495 * 9 8 7 38 38 H 1.09002 * 110.99977 * 143.51439 * 9 8 7 39 39 H 1.09007 * 109.63306 * 94.04974 * 11 10 9 40 40 H 1.09000 * 109.53579 * 333.66425 * 11 10 9 41 41 H 1.09002 * 109.07668 * 162.69120 * 12 11 10 42 42 H 1.08995 * 109.07360 * 43.66256 * 12 11 10 43 43 H 1.09001 * 108.76481 * 182.33891 * 13 12 11 44 44 H 1.08995 * 108.76484 * 300.49015 * 13 12 11 45 45 H 1.09000 * 109.46832 * 186.04674 * 15 14 13 46 46 H 1.09002 * 109.47044 * 306.04744 * 15 14 13 47 47 H 1.09001 * 109.47268 * 300.00344 * 16 15 14 48 48 H 1.09002 * 109.46935 * 60.00240 * 16 15 14 49 49 H 0.96999 * 120.00051 * 179.97438 * 20 19 17 50 50 H 1.09002 * 109.00764 * 217.07087 * 25 14 13 51 51 H 1.09000 * 109.01521 * 335.95016 * 25 14 13 52 52 H 1.09008 * 108.93234 * 79.70178 * 26 25 14 53 53 H 1.09001 * 108.92681 * 198.37203 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 0.0006 5 1 1.7604 -2.0131 0.6614 6 6 2.2987 -1.8725 -1.4197 7 7 3.6287 -1.0787 0.4730 8 6 4.2127 -1.7194 1.6574 9 6 5.7402 -1.5389 1.5126 10 6 5.8250 -0.2765 0.6249 11 6 5.9793 0.9548 1.4764 12 6 5.2438 2.1301 0.7924 13 6 6.0131 2.6610 -0.3280 14 7 6.2427 1.6657 -1.3950 15 6 6.4278 2.3221 -2.6962 16 6 7.7212 3.1391 -2.6759 17 6 7.9114 3.8119 -4.0109 18 1 7.1824 3.6712 -4.7952 19 6 9.0155 4.6079 -4.2306 20 7 9.9029 4.7796 -3.2754 21 14 9.2508 5.4424 -5.8852 22 1 8.1005 6.3425 -6.1536 23 1 10.5062 6.2353 -5.8655 24 1 9.3329 4.4126 -6.9518 25 6 7.3876 0.8549 -1.0574 26 6 6.9742 -0.4687 -0.3861 27 6 4.5111 -0.2578 -0.1230 28 8 4.2857 0.4020 -1.1154 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3632 -0.8900 -0.5139 32 1 2.7988 -1.1645 -2.0806 33 1 2.8434 -2.8167 -1.4193 34 1 1.2808 -2.0409 -1.7712 35 1 3.9583 -2.7792 1.6769 36 1 3.8592 -1.2291 2.5643 37 1 6.1890 -2.3977 1.0135 38 1 6.2068 -1.3659 2.4824 39 1 7.0368 1.1973 1.5815 40 1 5.5446 0.7747 2.4597 41 1 5.0840 2.9236 1.5225 42 1 4.2775 1.7818 0.4279 43 1 5.4765 3.5105 -0.7505 44 1 6.9780 3.0075 0.0420 45 1 6.4877 1.5661 -3.4791 46 1 5.5836 2.9830 -2.8930 47 1 7.6613 3.8950 -1.8928 48 1 8.5654 2.4781 -2.4790 49 1 10.6799 5.3393 -3.4301 50 1 7.9458 0.6326 -1.9668 51 1 8.0289 1.4126 -0.3748 52 1 6.6541 -1.1709 -1.1560 53 1 7.8362 -0.8851 0.1353 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038371.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:31 Heat of formation + Delta-G solvation = -65.062921 kcal Electronic energy + Delta-G solvation = -32286.543559 eV Core-core repulsion = 28351.216012 eV Total energy + Delta-G solvation = -3935.327547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.27034 -40.39293 -39.13691 -37.01926 -36.27554 -35.03302 -33.92371 -33.02231 -31.38197 -30.44010 -29.20879 -27.75524 -26.59398 -25.72154 -25.23548 -23.55379 -22.84788 -22.27860 -20.86763 -20.07126 -18.87446 -18.65903 -17.69752 -17.40682 -16.78561 -16.61955 -16.53454 -16.04265 -15.81197 -15.70226 -15.34007 -15.15681 -15.00579 -14.71934 -14.44121 -14.25271 -14.17972 -13.61445 -13.56569 -13.49313 -13.31884 -13.22505 -13.08717 -12.95722 -12.88654 -12.79646 -12.66071 -12.63830 -12.55240 -12.31618 -12.29860 -11.86794 -11.74783 -11.64449 -11.43943 -11.37269 -11.27371 -11.09835 -10.60683 -10.57455 -9.91596 -9.26663 -8.76294 -8.23631 -6.38166 1.14026 1.33430 1.37903 1.45917 2.15825 2.24528 2.35697 3.05960 3.15281 3.18955 3.51818 3.66932 3.88317 4.02563 4.10370 4.16656 4.17658 4.24818 4.27240 4.31804 4.39211 4.42979 4.55691 4.56877 4.61922 4.69020 4.71320 4.74074 4.76694 4.81323 4.86448 4.87840 4.93726 4.95578 4.98590 5.03359 5.14976 5.18009 5.18575 5.28815 5.31010 5.33496 5.41168 5.42826 5.51511 5.58813 5.71382 5.94657 6.05538 6.40677 6.49818 6.51472 6.78087 6.78468 7.30630 7.83720 8.85787 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.003310 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.403135 B = 8458.086749 C = 9218.260880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.324 3.676 3 O -0.478 6.478 4 C 0.109 3.891 5 H 0.156 0.844 6 C -0.154 4.154 7 N -0.633 5.633 8 C 0.106 3.894 9 C -0.121 4.121 10 C -0.083 4.083 11 C -0.085 4.085 12 C -0.131 4.131 13 C 0.076 3.924 14 N -0.486 5.486 15 C 0.084 3.916 16 C 0.008 3.992 17 C -0.548 4.548 18 H 0.055 0.945 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.968 3.032 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.265 1.265 25 C 0.055 3.945 26 C -0.079 4.079 27 C 0.519 3.481 28 O -0.496 6.496 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.030 0.970 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.027 0.973 44 H 0.010 0.990 45 H 0.052 0.948 46 H 0.040 0.960 47 H -0.016 1.016 48 H -0.004 1.004 49 H 0.265 0.735 50 H 0.041 0.959 51 H 0.023 0.977 52 H 0.053 0.947 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.878 -21.593 16.067 32.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.199 3.801 3 O -0.352 6.352 4 C 0.005 3.995 5 H 0.174 0.826 6 C -0.212 4.212 7 N -0.370 5.370 8 C -0.016 4.016 9 C -0.158 4.158 10 C -0.087 4.087 11 C -0.122 4.122 12 C -0.169 4.169 13 C -0.052 4.052 14 N -0.208 5.208 15 C -0.044 4.044 16 C -0.030 4.030 17 C -0.586 4.586 18 H 0.073 0.927 19 C -0.196 4.196 20 N -0.571 5.571 21 Si 0.792 3.208 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.075 4.075 26 C -0.118 4.118 27 C 0.305 3.695 28 O -0.367 6.367 29 H 0.134 0.866 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.046 0.954 44 H 0.028 0.972 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.003 0.997 48 H 0.014 0.986 49 H 0.073 0.927 50 H 0.060 0.940 51 H 0.041 0.959 52 H 0.071 0.929 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.020 -20.917 15.490 31.657 hybrid contribution 1.264 1.792 -1.159 2.481 sum -16.756 -19.124 14.332 29.187 Atomic orbital electron populations 1.22285 0.91241 1.05567 1.05959 1.25845 0.93750 0.90619 0.69866 1.90504 1.72807 1.36444 1.35402 1.21590 0.82448 0.96530 0.98899 0.82643 1.21980 1.04028 1.01014 0.94134 1.48474 1.11845 1.46928 1.29773 1.22242 0.92903 0.99423 0.87044 1.22887 0.95943 0.95882 1.01082 1.21093 0.93886 0.97652 0.96053 1.21210 1.00780 0.92384 0.97872 1.20885 1.01295 0.98873 0.95857 1.20703 0.97474 0.93697 0.93305 1.62141 1.37446 1.20478 1.00695 1.22011 0.96022 0.95570 0.90843 1.19545 0.93709 0.94166 0.95613 1.21577 1.07671 1.29699 0.99681 0.92654 1.26001 0.95352 0.97029 1.01208 1.70093 1.12383 1.39755 1.34898 0.85460 0.77685 0.78595 0.79062 1.19372 1.20257 1.18982 1.21906 0.91441 0.95718 0.98399 1.21924 0.97550 0.95360 0.96935 1.20734 0.86410 0.78150 0.84170 1.90832 1.79772 1.40618 1.25440 0.86605 0.91245 0.86709 0.95099 0.90330 0.88541 0.87599 0.90652 0.88978 0.87157 0.91519 0.89107 0.92249 0.89842 0.95409 0.97158 0.92987 0.94097 0.99748 0.98556 0.92655 0.94007 0.95855 0.92862 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 10.25 71.24 0.73 -1.43 16 2 C 0.32 6.78 6.42 29.10 0.19 6.97 16 3 O -0.48 -16.05 13.52 19.07 0.26 -15.79 16 4 C 0.11 1.70 3.20 44.25 0.14 1.84 16 5 H 0.16 0.84 8.07 -2.38 -0.02 0.82 16 6 C -0.15 -2.56 9.18 71.98 0.66 -1.90 16 7 N -0.63 -12.73 2.76 -798.20 -2.20 -14.93 16 8 C 0.11 1.20 7.30 86.84 0.63 1.83 16 9 C -0.12 -1.62 5.94 31.63 0.19 -1.43 16 10 C -0.08 -2.06 0.54 -52.62 -0.03 -2.09 16 11 C -0.08 -2.23 4.92 30.33 0.15 -2.08 16 12 C -0.13 -4.64 5.24 28.96 0.15 -4.49 16 13 C 0.08 3.31 3.91 83.97 0.33 3.64 16 14 N -0.49 -21.66 1.71 -911.93 -1.56 -23.22 16 15 C 0.08 4.35 5.00 86.30 0.43 4.78 16 16 C 0.01 0.48 4.42 29.85 0.13 0.62 16 17 C -0.55 -34.32 9.11 25.60 0.23 -34.09 16 18 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 19 C 0.00 0.13 5.46 84.66 0.46 0.59 16 20 N -0.93 -59.90 13.29 21.45 0.28 -59.61 16 21 Si 0.97 47.22 29.54 68.60 2.03 49.25 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 C 0.05 2.18 4.01 87.15 0.35 2.53 16 26 C -0.08 -2.29 4.73 31.38 0.15 -2.14 16 27 C 0.52 15.41 3.78 87.87 0.33 15.74 16 28 O -0.50 -19.94 10.22 17.51 0.18 -19.77 16 29 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.11 0.54 8.00 -2.39 -0.02 0.52 16 32 H 0.03 0.84 6.80 -2.39 -0.02 0.82 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 1.00 8.02 -2.39 -0.02 0.98 16 35 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.09 1.06 7.80 -2.39 -0.02 1.04 16 38 H 0.11 1.00 7.78 -2.39 -0.02 0.98 16 39 H 0.07 1.80 7.20 -2.38 -0.02 1.78 16 40 H 0.09 1.81 7.69 -2.39 -0.02 1.79 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.08 3.30 3.79 -2.39 -0.01 3.29 16 43 H 0.03 1.33 7.63 -2.39 -0.02 1.31 16 44 H 0.01 0.47 6.90 -2.39 -0.02 0.45 16 45 H 0.05 2.70 8.13 -2.39 -0.02 2.68 16 46 H 0.04 2.21 7.89 -2.39 -0.02 2.19 16 47 H -0.02 -1.02 7.18 -2.39 -0.02 -1.04 16 48 H 0.00 -0.24 6.65 -2.39 -0.02 -0.26 16 49 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 50 H 0.04 1.83 6.81 -2.39 -0.02 1.82 16 51 H 0.02 0.97 6.53 -2.39 -0.02 0.95 16 52 H 0.05 1.60 7.93 -2.38 -0.02 1.58 16 53 H 0.09 2.09 8.01 -2.39 -0.02 2.07 16 Total: -1.00 -87.98 389.48 5.10 -82.88 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.88 Total: 12.32 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 5.23 Total: -11.12 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -3.48 Total: -97.76 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: 0.44 Total: -35.56 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -87.98 5.10 -82.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038371.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.817 kcal (2) G-P(sol) polarization free energy of solvation -87.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds