Wall clock time and date at job start Tue Mar 31 2020 20:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20758 * 119.99844 * 2 1 4 4 C 1.50692 * 119.99991 * 180.02562 * 2 1 3 5 5 H 1.09001 * 109.47788 * 45.00118 * 4 2 1 6 6 C 1.53005 * 109.47360 * 284.99820 * 4 2 1 7 7 N 1.46484 * 109.47246 * 164.99954 * 4 2 1 8 8 C 1.46778 * 124.47714 * 240.13397 * 7 4 2 9 9 C 1.54612 * 105.35373 * 163.54730 * 8 7 4 10 10 C 1.54636 * 101.33373 * 26.08667 * 9 8 7 11 11 C 1.50233 * 110.56234 * 94.72833 * 10 9 8 12 12 C 1.54407 * 113.56294 * 210.50497 * 11 10 9 13 13 C 1.54148 * 112.31255 * 293.11833 * 12 11 10 14 14 N 1.44151 * 111.89230 * 346.85765 * 13 12 11 15 15 C 1.46892 * 110.94290 * 208.10536 * 14 13 12 16 16 C 1.53001 * 109.47191 * 302.82813 * 15 14 13 17 17 C 1.50693 * 109.47556 * 185.09011 * 16 15 14 18 18 H 1.08005 * 119.99905 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00450 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99778 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00123 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47357 * 89.99513 * 21 19 17 23 23 H 1.48497 * 109.46929 * 209.99636 * 21 19 17 24 24 H 1.48499 * 109.47173 * 329.99539 * 21 19 17 25 25 C 1.47707 * 109.53757 * 85.25153 * 14 13 12 26 26 C 1.45696 * 113.41785 * 264.47035 * 25 14 13 27 27 C 1.34823 * 124.27985 * 60.02338 * 7 4 2 28 28 O 1.21225 * 124.13946 * 358.90459 * 27 7 4 29 29 H 1.08999 * 109.46954 * 239.99935 * 1 2 3 30 30 H 1.08999 * 109.47243 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46983 * 119.99684 * 1 2 3 32 32 H 1.08993 * 109.47322 * 180.02562 * 6 4 2 33 33 H 1.08994 * 109.46748 * 300.00506 * 6 4 2 34 34 H 1.09000 * 109.46936 * 59.99725 * 6 4 2 35 35 H 1.08983 * 110.39528 * 44.51036 * 8 7 4 36 36 H 1.08961 * 110.15918 * 282.50310 * 8 7 4 37 37 H 1.08879 * 111.10267 * 268.31571 * 9 8 7 38 38 H 1.08858 * 111.15711 * 143.90946 * 9 8 7 39 39 H 1.09198 * 108.57987 * 331.46285 * 11 10 9 40 40 H 1.09076 * 108.75627 * 89.08804 * 11 10 9 41 41 H 1.09211 * 108.77528 * 172.80488 * 12 11 10 42 42 H 1.08905 * 109.31609 * 54.43843 * 12 11 10 43 43 H 1.09099 * 108.85025 * 226.40916 * 13 12 11 44 44 H 1.08936 * 109.09393 * 107.88783 * 13 12 11 45 45 H 1.08995 * 109.47654 * 62.82975 * 15 14 13 46 46 H 1.09006 * 109.47131 * 182.83377 * 15 14 13 47 47 H 1.09001 * 109.47338 * 305.09497 * 16 15 14 48 48 H 1.09004 * 109.46738 * 65.08882 * 16 15 14 49 49 H 0.96998 * 120.00283 * 180.02562 * 20 19 17 50 50 H 1.09464 * 108.15669 * 144.27948 * 25 14 13 51 51 H 1.08727 * 109.21946 * 27.02450 * 25 14 13 52 52 H 1.09263 * 108.99924 * 300.73752 * 26 25 14 53 53 H 1.09293 * 108.94497 * 182.69440 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3050 -0.0006 5 1 1.8130 -1.9828 -0.7275 6 6 2.1923 -1.9341 1.3925 7 7 3.6600 -1.0608 -0.3579 8 6 4.3345 -1.6465 -1.5225 9 6 5.6109 -0.7980 -1.7259 10 6 5.8588 -0.2734 -0.2925 11 6 6.8284 -1.1616 0.4340 12 6 6.5940 -1.2139 1.9593 13 6 6.8859 0.1365 2.6429 14 7 7.5922 1.0397 1.7692 15 6 8.4216 1.9752 2.5403 16 6 7.5404 2.7440 3.5269 17 6 8.3671 3.7900 4.2292 18 1 9.4161 3.8962 3.9950 19 6 7.7844 4.6116 5.1708 20 7 6.5070 4.4826 5.4556 21 14 8.8090 5.9087 6.0409 22 1 8.7627 7.1762 5.2686 23 1 8.2638 6.1386 7.4028 24 1 10.2152 5.4423 6.1429 25 6 6.6241 1.7659 0.9223 26 6 6.4279 1.1561 -0.3863 27 6 4.4945 -0.2656 0.3412 28 8 4.1738 0.3516 1.3341 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3634 1.0276 0.0005 31 1 -0.3633 -0.5138 -0.8901 32 1 2.7376 -2.8777 1.3922 33 1 2.6398 -1.2563 2.1194 34 1 1.1509 -2.1158 1.6585 35 1 3.6953 -1.5841 -2.4029 36 1 4.5986 -2.6843 -1.3208 37 1 5.4282 0.0263 -2.4135 38 1 6.4429 -1.4142 -2.0622 39 1 6.7414 -2.1734 0.0327 40 1 7.8414 -0.8042 0.2443 41 1 7.2507 -1.9727 2.3901 42 1 5.5611 -1.4979 2.1555 43 1 7.4922 -0.0423 3.5322 44 1 5.9447 0.5929 2.9469 45 1 9.1819 1.4194 3.0891 46 1 8.9045 2.6776 1.8609 47 1 6.7260 3.2268 2.9868 48 1 7.1290 2.0522 4.2619 49 1 6.0969 5.0608 6.1178 50 1 6.9965 2.7847 0.7753 51 1 5.6710 1.8291 1.4418 52 1 7.3859 1.1236 -0.9108 53 1 5.7389 1.7751 -0.9665 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038372.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:37 Heat of formation + Delta-G solvation = -86.160666 kcal Electronic energy + Delta-G solvation = -32000.775354 eV Core-core repulsion = 28064.532940 eV Total energy + Delta-G solvation = -3936.242414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.37910 -40.52466 -39.24314 -37.40626 -36.33856 -35.07685 -33.68581 -33.35174 -31.50767 -30.52013 -29.29260 -27.89626 -26.62565 -25.70639 -25.46253 -23.46124 -23.15496 -22.34528 -20.69310 -20.28545 -19.18946 -18.68022 -17.78779 -17.30086 -17.12220 -16.61354 -16.55892 -16.33120 -15.92623 -15.76380 -15.33601 -15.31148 -14.95734 -14.85426 -14.47270 -14.22644 -14.14327 -14.13397 -13.68550 -13.56248 -13.40776 -13.27192 -13.08497 -13.01908 -12.94517 -12.83066 -12.77825 -12.74810 -12.61800 -12.48017 -12.23764 -11.90886 -11.81071 -11.66814 -11.57002 -11.37305 -11.29532 -11.03184 -10.77708 -10.63320 -10.18690 -9.47416 -9.14245 -8.25053 -6.40518 1.02485 1.33128 1.36660 1.48082 1.81660 2.09979 2.35072 3.04346 3.06034 3.12783 3.42977 3.56739 3.84178 3.94225 3.98941 4.06643 4.14013 4.17183 4.20935 4.31965 4.37445 4.41875 4.52052 4.52756 4.57239 4.62866 4.65205 4.67270 4.75527 4.77714 4.81176 4.87401 4.95205 4.97310 5.03467 5.10345 5.10624 5.16912 5.23119 5.26165 5.26861 5.31968 5.36223 5.41405 5.47302 5.55622 5.69882 5.79122 5.99196 6.26206 6.28550 6.35178 6.62537 6.78704 7.29800 7.47896 8.86184 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.003377 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.120841 B = 8288.939767 C = 9336.788198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.324 3.676 3 O -0.490 6.490 4 C 0.106 3.894 5 H 0.165 0.835 6 C -0.155 4.155 7 N -0.627 5.627 8 C 0.102 3.898 9 C -0.117 4.117 10 C -0.086 4.086 11 C -0.077 4.077 12 C -0.099 4.099 13 C 0.064 3.936 14 N -0.503 5.503 15 C 0.071 3.929 16 C 0.007 3.993 17 C -0.543 4.543 18 H 0.068 0.932 19 C -0.006 4.006 20 N -0.939 5.939 21 Si 0.974 3.026 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.256 1.256 25 C 0.051 3.949 26 C -0.079 4.079 27 C 0.524 3.476 28 O -0.550 6.550 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.025 0.975 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.039 0.961 43 H 0.044 0.956 44 H 0.000 1.000 45 H 0.070 0.930 46 H 0.067 0.933 47 H -0.024 1.024 48 H -0.020 1.020 49 H 0.262 0.738 50 H 0.034 0.966 51 H 0.023 0.977 52 H 0.095 0.905 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.331 -22.076 -20.647 31.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.200 3.800 3 O -0.365 6.365 4 C 0.003 3.997 5 H 0.183 0.817 6 C -0.213 4.213 7 N -0.362 5.362 8 C -0.019 4.019 9 C -0.154 4.154 10 C -0.090 4.090 11 C -0.115 4.115 12 C -0.137 4.137 13 C -0.065 4.065 14 N -0.225 5.225 15 C -0.057 4.057 16 C -0.031 4.031 17 C -0.582 4.582 18 H 0.086 0.914 19 C -0.203 4.203 20 N -0.579 5.579 21 Si 0.797 3.203 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.180 1.180 25 C -0.077 4.077 26 C -0.117 4.117 27 C 0.313 3.687 28 O -0.426 6.426 29 H 0.130 0.870 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.143 0.857 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.019 0.981 45 H 0.089 0.911 46 H 0.086 0.914 47 H -0.006 1.006 48 H -0.002 1.002 49 H 0.071 0.929 50 H 0.053 0.947 51 H 0.042 0.958 52 H 0.113 0.887 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.058 -21.440 -20.328 30.902 hybrid contribution -0.711 2.068 1.948 2.928 sum -9.769 -19.372 -18.380 28.435 Atomic orbital electron populations 1.22334 0.90810 1.04983 1.07004 1.25939 0.94084 0.90561 0.69451 1.90520 1.73191 1.36780 1.35982 1.21669 0.81243 0.96115 1.00699 0.81732 1.22021 1.04486 1.00773 0.94040 1.48558 1.10169 1.48294 1.29185 1.22391 0.93791 0.98084 0.87605 1.22888 0.98989 1.00599 0.92922 1.20927 0.92493 0.97316 0.98217 1.20984 0.99275 0.98967 0.92235 1.21924 0.99959 0.94840 0.97027 1.21713 0.95315 0.94735 0.94777 1.62093 1.21635 1.17325 1.21442 1.22249 0.95235 0.93620 0.94607 1.19495 0.94910 0.94629 0.94100 1.21664 0.96703 1.17693 1.22102 0.91379 1.26156 0.96159 1.00221 0.97794 1.70179 1.13110 1.40463 1.34156 0.85318 0.79052 0.78505 0.77394 1.19665 1.20726 1.17952 1.20908 0.94639 0.96114 0.96031 1.20383 1.01600 0.94372 0.95345 1.20957 0.87848 0.77234 0.82691 1.90689 1.79899 1.44665 1.27340 0.86982 0.91694 0.85150 0.89789 0.95613 0.88067 0.88234 0.88343 0.90058 0.85701 0.88964 0.89379 0.90418 0.94224 0.93770 0.98129 0.91131 0.91429 1.00609 1.00153 0.92901 0.94702 0.95819 0.88699 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 10.24 71.24 0.73 -1.79 16 2 C 0.32 7.53 6.39 29.10 0.19 7.71 16 3 O -0.49 -18.29 14.91 18.68 0.28 -18.01 16 4 C 0.11 1.78 3.21 44.25 0.14 1.92 16 5 H 0.17 0.91 8.07 -2.39 -0.02 0.89 16 6 C -0.16 -2.75 9.17 71.98 0.66 -2.09 16 7 N -0.63 -13.29 2.74 -798.63 -2.18 -15.47 16 8 C 0.10 1.14 7.31 86.88 0.64 1.77 16 9 C -0.12 -1.62 6.01 31.70 0.19 -1.43 16 10 C -0.09 -2.17 0.49 -52.96 -0.03 -2.20 16 11 C -0.08 -1.81 4.51 30.18 0.14 -1.67 16 12 C -0.10 -3.08 5.45 31.46 0.17 -2.91 16 13 C 0.06 2.72 3.89 87.20 0.34 3.06 16 14 N -0.50 -20.83 3.72 -912.19 -3.39 -24.23 16 15 C 0.07 3.35 4.93 86.31 0.43 3.77 16 16 C 0.01 0.42 4.35 29.85 0.13 0.55 16 17 C -0.54 -33.70 9.11 25.60 0.23 -33.46 16 18 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 19 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 20 N -0.94 -63.13 13.29 21.45 0.28 -62.84 16 21 Si 0.97 47.46 29.54 68.60 2.03 49.49 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 25 C 0.05 2.17 3.67 83.91 0.31 2.48 16 26 C -0.08 -2.47 4.08 28.75 0.12 -2.35 16 27 C 0.52 16.55 4.16 87.56 0.36 16.91 16 28 O -0.55 -24.22 10.18 17.27 0.18 -24.05 16 29 H 0.11 1.02 7.89 -2.39 -0.02 1.00 16 30 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 31 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.02 0.74 6.78 -2.39 -0.02 0.72 16 34 H 0.10 1.11 7.89 -2.39 -0.02 1.10 16 35 H 0.10 0.62 8.14 -2.40 -0.02 0.60 16 36 H 0.10 0.59 8.14 -2.41 -0.02 0.57 16 37 H 0.08 1.17 7.76 -2.45 -0.02 1.15 16 38 H 0.12 0.95 7.78 -2.46 -0.02 0.93 16 39 H 0.09 1.44 7.71 -2.28 -0.02 1.42 16 40 H 0.09 2.15 7.10 -2.35 -0.02 2.13 16 41 H 0.08 2.06 8.16 -2.28 -0.02 2.04 16 42 H 0.04 1.31 6.72 -2.44 -0.02 1.30 16 43 H 0.04 1.94 7.49 -2.33 -0.02 1.92 16 44 H 0.00 0.02 6.00 -2.42 -0.01 0.00 16 45 H 0.07 3.18 8.08 -2.39 -0.02 3.16 16 46 H 0.07 3.09 7.93 -2.38 -0.02 3.07 16 47 H -0.02 -1.65 7.06 -2.39 -0.02 -1.67 16 48 H -0.02 -1.32 7.12 -2.39 -0.02 -1.33 16 49 H 0.26 16.51 8.31 -92.71 -0.77 15.73 16 50 H 0.03 1.59 7.34 -2.14 -0.02 1.57 16 51 H 0.02 1.24 4.92 -2.53 -0.01 1.23 16 52 H 0.09 2.49 8.08 -2.25 -0.02 2.47 16 53 H 0.05 1.67 8.05 -2.23 -0.02 1.65 16 Total: -1.00 -95.22 392.79 3.27 -91.94 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.88 Total: 12.80 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 5.21 Total: -9.64 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -5.29 Total: -102.54 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: 0.45 Total: -42.05 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -95.22 3.27 -91.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038372.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.783 kcal (2) G-P(sol) polarization free energy of solvation -95.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds