Wall clock time and date at job start Tue Mar 31 2020 20:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20762 * 119.99940 * 2 1 4 4 C 1.50701 * 119.99655 * 179.97438 * 2 1 3 5 5 H 1.09001 * 109.47142 * 319.99456 * 4 2 1 6 6 C 1.52997 * 109.47039 * 80.00207 * 4 2 1 7 7 N 1.46501 * 109.46692 * 200.00092 * 4 2 1 8 8 C 1.34776 * 119.99949 * 154.99981 * 7 4 2 9 9 O 1.21280 * 120.00121 * 359.97438 * 8 7 4 10 10 C 1.50703 * 119.99853 * 179.97438 * 8 7 4 11 11 H 1.08995 * 115.55955 * 300.78371 * 10 8 7 12 12 C 1.53048 * 117.50167 * 155.03223 * 10 8 7 13 13 C 1.52735 * 59.94919 * 252.53121 * 12 10 8 14 14 C 1.53214 * 117.85035 * 252.26385 * 13 12 10 15 15 C 1.53262 * 108.62936 * 162.99696 * 14 13 12 16 16 N 1.46803 * 109.44109 * 55.58876 * 15 14 13 17 17 C 1.46898 * 111.00047 * 170.79828 * 16 15 14 18 18 C 1.53006 * 109.47072 * 294.69918 * 17 16 15 19 19 C 1.52993 * 109.47122 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.47032 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00067 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00004 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47036 * 60.00241 * 24 22 20 26 26 H 1.48510 * 109.47064 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47569 * 299.99990 * 24 22 20 28 28 C 1.46811 * 111.58063 * 295.17085 * 16 15 14 29 29 C 1.53219 * 117.84496 * 107.73965 * 13 12 10 30 30 H 1.08999 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47610 * 300.00036 * 1 2 3 32 32 H 1.09000 * 109.47033 * 59.99906 * 1 2 3 33 33 H 1.09000 * 109.47344 * 299.99346 * 6 4 2 34 34 H 1.09001 * 109.47050 * 59.99841 * 6 4 2 35 35 H 1.09008 * 109.46538 * 179.97438 * 6 4 2 36 36 H 0.96997 * 120.00355 * 334.99813 * 7 4 2 37 37 H 1.09001 * 117.50185 * 145.06149 * 12 10 8 38 38 H 1.09001 * 117.50768 * 0.02562 * 12 10 8 39 39 H 1.09002 * 109.60835 * 282.73990 * 14 13 12 40 40 H 1.09005 * 109.61062 * 43.24935 * 14 13 12 41 41 H 1.08997 * 109.47212 * 175.57807 * 15 14 13 42 42 H 1.08999 * 109.47349 * 295.59610 * 15 14 13 43 43 H 1.08993 * 109.47378 * 54.69904 * 17 16 15 44 44 H 1.08997 * 109.47310 * 174.70277 * 17 16 15 45 45 H 1.08993 * 109.47007 * 300.00213 * 18 17 16 46 46 H 1.08997 * 109.46759 * 60.00022 * 18 17 16 47 47 H 1.08993 * 109.47534 * 300.00112 * 19 18 17 48 48 H 1.09002 * 109.47514 * 60.00230 * 19 18 17 49 49 H 0.97001 * 120.00061 * 180.02562 * 23 22 20 50 50 H 1.08999 * 109.47469 * 304.84157 * 28 16 15 51 51 H 1.08999 * 109.48310 * 184.82212 * 28 16 15 52 52 H 1.08996 * 109.61113 * 316.74353 * 29 13 12 53 53 H 1.09001 * 109.60796 * 77.09415 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3052 0.0006 5 1 1.7603 -2.0131 0.6615 6 6 2.2985 -1.8727 -1.4197 7 7 3.6286 -1.0789 0.4729 8 6 4.3235 -2.0884 1.0336 9 8 3.8161 -3.1840 1.1476 10 6 5.7312 -1.8557 1.5190 11 1 6.4401 -1.5201 0.7622 12 6 6.2583 -2.7735 2.6246 13 6 5.9085 -1.3203 2.9388 14 6 7.0625 -0.3458 3.1958 15 6 6.5327 1.0862 3.0638 16 7 5.3958 1.2724 3.9738 17 6 4.9991 2.6853 4.0384 18 6 6.1280 3.5037 4.6683 19 6 5.7150 4.9754 4.7350 20 6 6.8272 5.7816 5.3549 21 1 7.7373 5.2931 5.6702 22 6 6.6824 7.1427 5.5206 23 7 5.5735 7.7374 5.1380 24 14 8.0607 8.1418 6.2896 25 1 9.2880 8.0095 5.4642 26 1 7.6599 9.5704 6.3542 27 1 8.3300 7.6403 7.6610 28 6 4.2586 0.4233 3.5979 29 6 4.6457 -1.0504 3.7634 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.2805 -2.0410 -1.7712 34 1 2.7986 -1.1647 -2.0806 35 1 2.8439 -2.8165 -1.4193 36 1 4.0344 -0.2025 0.3821 37 1 7.3143 -3.0419 2.5951 38 1 5.5871 -3.5457 3.0005 39 1 7.4543 -0.4998 4.2013 40 1 7.8523 -0.5127 2.4633 41 1 7.3232 1.7913 3.3209 42 1 6.2093 1.2609 2.0377 43 1 4.8014 3.0536 3.0318 44 1 4.0982 2.7824 4.6442 45 1 6.3257 3.1355 5.6749 46 1 7.0288 3.4066 4.0625 47 1 5.5176 5.3434 3.7283 48 1 4.8140 5.0729 5.3406 49 1 5.4717 8.6950 5.2542 50 1 3.9905 0.6141 2.5588 51 1 3.4078 0.6500 4.2403 52 1 3.8337 -1.6841 3.4071 53 1 4.8424 -1.2638 4.8141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274043736.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:30 Heat of formation + Delta-G solvation = -86.778153 kcal Electronic energy + Delta-G solvation = -30105.059523 eV Core-core repulsion = 26168.790333 eV Total energy + Delta-G solvation = -3936.269190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.81028 -40.74239 -39.64058 -37.68180 -36.11674 -35.63845 -33.60950 -32.69602 -31.97548 -30.81628 -30.21368 -27.85141 -26.29683 -24.84771 -24.43053 -24.11071 -22.66264 -21.53633 -21.38532 -20.78702 -19.67530 -18.49879 -18.28199 -17.72130 -17.06589 -16.65865 -16.46693 -16.37568 -16.20366 -15.89572 -15.64988 -15.51342 -15.35325 -14.87303 -14.58091 -14.36325 -14.22937 -14.09746 -13.85059 -13.59894 -13.40291 -13.31229 -13.18981 -13.13704 -13.03614 -12.86103 -12.68478 -12.63469 -12.57567 -12.37419 -12.29327 -12.16317 -11.66644 -11.40850 -11.30164 -11.20473 -11.19043 -10.85876 -10.85134 -10.61110 -10.53805 -10.20974 -9.23889 -8.19721 -6.31079 0.77212 1.39841 1.43425 1.44361 1.51260 1.94971 2.41101 2.69425 2.89620 2.95802 3.13208 3.49008 3.64100 3.79491 3.81651 3.92618 4.01636 4.04627 4.07448 4.14750 4.25371 4.27913 4.43300 4.48559 4.51960 4.55823 4.57510 4.60545 4.66063 4.70289 4.76292 4.81516 4.84903 4.90307 4.94872 5.00436 5.03102 5.05231 5.09372 5.14294 5.15204 5.24938 5.27981 5.30938 5.33251 5.52230 5.74440 5.85884 6.09829 6.23197 6.27626 6.33414 6.34440 6.85754 7.08960 7.38152 8.92205 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.002572 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.876179 B =10883.462983 C =12487.299962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.356 3.644 3 O -0.491 6.491 4 C 0.087 3.913 5 H 0.120 0.880 6 C -0.150 4.150 7 N -0.716 5.716 8 C 0.554 3.446 9 O -0.569 6.569 10 C -0.193 4.193 11 H 0.144 0.856 12 C -0.125 4.125 13 C -0.096 4.096 14 C -0.069 4.069 15 C 0.051 3.949 16 N -0.538 5.538 17 C 0.070 3.930 18 C -0.086 4.086 19 C 0.026 3.974 20 C -0.542 4.542 21 H 0.061 0.939 22 C -0.002 4.002 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.266 1.266 26 H -0.283 1.283 27 H -0.266 1.266 28 C 0.062 3.938 29 C -0.073 4.073 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.407 0.593 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.028 0.972 43 H 0.017 0.983 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.053 0.947 47 H -0.013 1.013 48 H -0.011 1.011 49 H 0.263 0.737 50 H 0.027 0.973 51 H 0.067 0.933 52 H 0.061 0.939 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 -24.890 -12.530 28.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.233 3.767 3 O -0.366 6.366 4 C -0.018 4.018 5 H 0.137 0.863 6 C -0.208 4.208 7 N -0.369 5.369 8 C 0.342 3.658 9 O -0.448 6.448 10 C -0.214 4.214 11 H 0.161 0.839 12 C -0.162 4.162 13 C -0.096 4.096 14 C -0.106 4.106 15 C -0.077 4.077 16 N -0.263 5.263 17 C -0.058 4.058 18 C -0.124 4.124 19 C -0.011 4.011 20 C -0.580 4.580 21 H 0.079 0.921 22 C -0.200 4.200 23 N -0.576 5.576 24 Si 0.790 3.210 25 H -0.191 1.191 26 H -0.208 1.208 27 H -0.191 1.191 28 C -0.066 4.066 29 C -0.111 4.111 30 H 0.130 0.870 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.243 0.757 37 H 0.144 0.856 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.036 0.964 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.005 0.995 48 H 0.008 0.992 49 H 0.072 0.928 50 H 0.045 0.955 51 H 0.085 0.915 52 H 0.079 0.921 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.324 -25.097 -12.013 28.534 hybrid contribution 0.135 1.709 -0.594 1.814 sum -6.189 -23.388 -12.607 27.281 Atomic orbital electron populations 1.22292 0.90311 1.07038 1.05841 1.25360 0.94138 0.88816 0.68402 1.90472 1.72851 1.36058 1.37231 1.21661 0.83480 0.97303 0.99398 0.86277 1.22005 1.04838 1.01247 0.92683 1.45974 1.14929 1.14293 1.61683 1.19892 0.87063 0.83342 0.75529 1.90668 1.71288 1.25204 1.57665 1.22502 0.94795 1.09517 0.94560 0.83876 1.23079 1.03118 0.92202 0.97815 1.21533 0.97928 0.96628 0.93535 1.21230 0.95126 0.90831 1.03436 1.22206 0.93653 0.98312 0.93497 1.61773 1.07526 1.05616 1.51388 1.21968 0.98334 0.87310 0.98201 1.21383 0.97025 0.94169 0.99847 1.18961 0.95378 0.92179 0.94613 1.21662 1.02664 0.93395 1.40276 0.92098 1.26016 0.98439 0.99378 0.96143 1.70105 1.27945 1.10642 1.48866 0.85485 0.79074 0.77137 0.79273 1.19055 1.20843 1.19080 1.22031 0.92903 0.93264 0.98358 1.21157 0.94955 0.94300 1.00672 0.86963 0.88362 0.87437 0.88021 0.92286 0.91753 0.75658 0.85601 0.88626 0.90077 0.88965 0.90784 0.95361 0.96432 0.91899 0.92804 0.92837 0.99468 0.99240 0.92785 0.95517 0.91451 0.92063 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 10.33 71.24 0.74 -0.92 16 2 C 0.36 5.68 6.51 29.10 0.19 5.87 16 3 O -0.49 -12.26 16.67 -1.46 -0.02 -12.28 16 4 C 0.09 1.31 2.82 44.24 0.12 1.43 16 5 H 0.12 1.73 7.58 -2.39 -0.02 1.71 16 6 C -0.15 -1.74 9.47 71.98 0.68 -1.06 16 7 N -0.72 -13.46 4.89 -446.09 -2.18 -15.64 16 8 C 0.55 11.59 5.82 87.66 0.51 12.10 16 9 O -0.57 -14.87 16.22 -3.03 -0.05 -14.92 16 10 C -0.19 -3.39 5.88 -11.60 -0.07 -3.46 16 11 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 12 C -0.12 -2.02 9.51 30.52 0.29 -1.73 16 13 C -0.10 -1.78 2.02 -52.20 -0.11 -1.89 16 14 C -0.07 -1.32 5.87 30.75 0.18 -1.13 16 15 C 0.05 1.32 5.35 86.41 0.46 1.78 16 16 N -0.54 -16.00 4.59 -895.66 -4.11 -20.11 16 17 C 0.07 2.55 4.96 86.31 0.43 2.98 16 18 C -0.09 -3.70 5.08 30.59 0.16 -3.55 16 19 C 0.03 1.44 4.97 29.85 0.15 1.59 16 20 C -0.54 -31.66 9.11 25.60 0.23 -31.42 16 21 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 22 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 23 N -0.94 -58.26 13.29 21.45 0.28 -57.98 16 24 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 28 C 0.06 1.62 5.49 86.41 0.47 2.09 16 29 C -0.07 -1.59 5.52 30.76 0.17 -1.42 16 30 H 0.11 0.31 8.00 -2.39 -0.02 0.29 16 31 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.41 8.19 7.47 -92.71 -0.69 7.50 16 37 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.76 7.89 -2.39 -0.02 1.74 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.09 1.36 8.08 -2.38 -0.02 1.34 16 41 H 0.07 2.10 6.07 -2.39 -0.01 2.09 16 42 H 0.03 0.74 8.12 -2.39 -0.02 0.72 16 43 H 0.02 0.67 8.13 -2.39 -0.02 0.65 16 44 H 0.06 2.35 7.94 -2.39 -0.02 2.33 16 45 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.05 2.21 6.35 -2.39 -0.02 2.20 16 47 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 48 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 49 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 50 H 0.03 0.71 7.69 -2.39 -0.02 0.70 16 51 H 0.07 1.79 7.95 -2.39 -0.02 1.77 16 52 H 0.06 1.36 6.85 -2.39 -0.02 1.34 16 53 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -74.13 422.55 1.21 -72.92 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.19 Total: 19.42 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 5.07 Total: -18.40 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -6.00 Total: -93.74 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.07 Total: -27.20 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -74.13 1.21 -72.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043736.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.861 kcal (2) G-P(sol) polarization free energy of solvation -74.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds