Wall clock time and date at job start Tue Mar 31 2020 20:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20761 * 119.99753 * 2 1 4 4 C 1.50697 * 119.99954 * 179.97438 * 2 1 3 5 5 H 1.08994 * 109.47204 * 320.00603 * 4 2 1 6 6 C 1.53007 * 109.46897 * 80.00133 * 4 2 1 7 7 N 1.46494 * 109.47079 * 199.99752 * 4 2 1 8 8 C 1.34779 * 120.00159 * 155.00545 * 7 4 2 9 9 O 1.21287 * 119.99870 * 359.97438 * 8 7 4 10 10 C 1.50694 * 120.00463 * 180.02562 * 8 7 4 11 11 H 1.08999 * 115.56652 * 325.71654 * 10 8 7 12 12 C 1.53053 * 117.50650 * 111.43672 * 10 8 7 13 13 C 1.52734 * 117.50596 * 179.97438 * 10 8 7 14 14 C 1.53223 * 117.84242 * 144.78190 * 13 10 8 15 15 C 1.53256 * 108.61950 * 162.99002 * 14 13 10 16 16 N 1.46813 * 109.44626 * 55.60157 * 15 14 13 17 17 C 1.46899 * 111.00227 * 170.80219 * 16 15 14 18 18 C 1.53002 * 109.46870 * 66.18662 * 17 16 15 19 19 C 1.53004 * 109.46920 * 183.23476 * 18 17 16 20 20 C 1.50696 * 109.47014 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00070 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99692 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99634 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00250 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47565 * 89.99640 * 24 22 20 26 26 H 1.48495 * 109.47344 * 210.00000 * 24 22 20 27 27 H 1.48507 * 109.47264 * 329.99826 * 24 22 20 28 28 C 1.46811 * 111.56860 * 295.17352 * 16 15 14 29 29 C 1.53210 * 117.84977 * 0.27445 * 13 10 8 30 30 H 1.09002 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47436 * 299.99781 * 1 2 3 32 32 H 1.08998 * 109.47411 * 60.00131 * 1 2 3 33 33 H 1.08995 * 109.47163 * 179.97438 * 6 4 2 34 34 H 1.09001 * 109.46850 * 299.99995 * 6 4 2 35 35 H 1.09002 * 109.46684 * 59.99915 * 6 4 2 36 36 H 0.96997 * 120.00490 * 335.00450 * 7 4 2 37 37 H 1.09000 * 117.50573 * 0.02562 * 12 10 8 38 38 H 1.09001 * 117.53063 * 214.93223 * 12 10 8 39 39 H 1.09000 * 109.61249 * 43.24981 * 14 13 10 40 40 H 1.08998 * 109.75602 * 282.81470 * 14 13 10 41 41 H 1.08999 * 109.47938 * 295.61118 * 15 14 13 42 42 H 1.09000 * 109.47956 * 175.59225 * 15 14 13 43 43 H 1.08998 * 109.47009 * 306.18327 * 17 16 15 44 44 H 1.08996 * 109.47136 * 186.18633 * 17 16 15 45 45 H 1.08998 * 109.46946 * 303.23319 * 18 17 16 46 46 H 1.08999 * 109.47342 * 63.23507 * 18 17 16 47 47 H 1.09004 * 109.46952 * 300.00108 * 19 18 17 48 48 H 1.08999 * 109.47088 * 59.99876 * 19 18 17 49 49 H 0.97000 * 119.99865 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.47719 * 184.81727 * 28 16 15 51 51 H 1.09003 * 109.47078 * 304.83624 * 28 16 15 52 52 H 1.08997 * 109.60994 * 316.75003 * 29 13 10 53 53 H 1.09005 * 109.60986 * 77.26515 * 29 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7604 -2.0131 0.6613 6 6 2.2985 -1.8726 -1.4198 7 7 3.6286 -1.0788 0.4728 8 6 4.3237 -2.0883 1.0334 9 8 3.8162 -3.1841 1.1473 10 6 5.7309 -1.8555 1.5197 11 1 6.3201 -1.1496 0.9344 12 6 5.9724 -1.8958 3.0305 13 6 6.4656 -3.0390 2.1461 14 6 7.9740 -3.1547 1.9031 15 6 8.5631 -4.1226 2.9351 16 7 7.8577 -5.4079 2.8581 17 6 8.5309 -6.4276 3.6734 18 6 8.4284 -6.0476 5.1520 19 6 9.1983 -7.0664 5.9949 20 6 9.0978 -6.6918 7.4511 21 1 8.5404 -5.8151 7.7459 22 6 9.7169 -7.4690 8.4071 23 7 9.6297 -7.1418 9.6779 24 14 10.6805 -8.9857 7.8972 25 1 12.0948 -8.6114 7.6427 26 1 10.6239 -9.9966 8.9835 27 1 10.0890 -9.5553 6.6598 28 6 6.4473 -5.2734 3.2428 29 6 5.7253 -4.3777 2.2302 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.8439 -2.8163 -1.4195 34 1 1.2805 -2.0409 -1.7712 35 1 2.7987 -1.1645 -2.0806 36 1 4.0344 -0.2025 0.3821 37 1 5.1135 -2.0911 3.6726 38 1 6.7206 -1.2168 3.4394 39 1 8.4386 -2.1749 2.0136 40 1 8.1572 -3.5353 0.8983 41 1 8.4465 -3.7035 3.9345 42 1 9.6218 -4.2761 2.7265 43 1 9.5805 -6.4881 3.3857 44 1 8.0539 -7.3944 3.5129 45 1 8.8542 -5.0556 5.3025 46 1 7.3812 -6.0432 5.4543 47 1 8.7724 -8.0584 5.8443 48 1 10.2455 -7.0708 5.6926 49 1 10.0648 -7.6887 10.3504 50 1 5.9788 -6.2575 3.2564 51 1 6.3823 -4.8262 4.2347 52 1 4.6995 -4.2086 2.5574 53 1 5.7254 -4.8579 1.2516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274043737.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:35 Heat of formation + Delta-G solvation = -80.431468 kcal Electronic energy + Delta-G solvation = -29249.841552 eV Core-core repulsion = 25313.847575 eV Total energy + Delta-G solvation = -3935.993977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.75651 -40.78904 -39.68964 -37.73205 -36.03109 -35.53074 -33.69270 -32.67679 -31.89016 -31.00541 -30.14862 -27.86502 -26.15010 -24.80762 -24.38683 -24.13431 -22.89025 -21.73322 -21.24681 -20.60491 -19.36015 -18.87524 -18.29002 -17.70474 -16.81931 -16.59010 -16.33899 -16.20442 -16.16334 -15.91607 -15.73879 -15.53502 -15.27075 -14.87533 -14.79139 -14.43484 -14.31913 -14.02987 -13.88812 -13.49865 -13.45715 -13.37025 -13.13874 -13.11587 -12.99829 -12.87078 -12.82330 -12.62388 -12.55535 -12.30569 -12.16315 -11.79919 -11.72498 -11.47416 -11.40010 -11.29266 -10.93597 -10.90285 -10.79519 -10.77650 -10.45883 -10.15237 -9.11279 -8.31125 -6.35718 0.78729 1.35096 1.37469 1.43030 1.50009 1.97324 2.35391 2.78518 2.93892 3.04026 3.09634 3.56370 3.66261 3.81371 3.94868 3.97193 4.06756 4.07592 4.12043 4.17120 4.25046 4.35524 4.40414 4.55140 4.56436 4.60421 4.60827 4.64460 4.68869 4.73102 4.79060 4.82488 4.88331 4.90394 4.96618 5.01207 5.03643 5.07262 5.08834 5.15676 5.19306 5.22876 5.32771 5.38973 5.48417 5.50955 5.56217 5.64807 6.15288 6.25101 6.29039 6.34009 6.43294 6.71881 7.18604 7.28910 8.85850 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024482 B = 0.001867 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.419109 B =14993.900208 C =15251.232167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.362 3.638 3 O -0.488 6.488 4 C 0.086 3.914 5 H 0.115 0.885 6 C -0.151 4.151 7 N -0.716 5.716 8 C 0.545 3.455 9 O -0.559 6.559 10 C -0.176 4.176 11 H 0.149 0.851 12 C -0.145 4.145 13 C -0.093 4.093 14 C -0.069 4.069 15 C 0.052 3.948 16 N -0.535 5.535 17 C 0.061 3.939 18 C -0.124 4.124 19 C -0.008 4.008 20 C -0.534 4.534 21 H 0.024 0.976 22 C 0.000 4.000 23 N -0.953 5.953 24 Si 0.956 3.044 25 H -0.264 1.264 26 H -0.284 1.284 27 H -0.245 1.245 28 C 0.055 3.945 29 C -0.059 4.059 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.412 0.588 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.024 0.976 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.044 0.956 46 H 0.039 0.961 47 H 0.020 0.980 48 H 0.021 0.979 49 H 0.266 0.734 50 H 0.066 0.934 51 H 0.020 0.980 52 H 0.077 0.923 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.690 15.016 -27.130 34.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.240 3.760 3 O -0.364 6.364 4 C -0.019 4.019 5 H 0.132 0.868 6 C -0.209 4.209 7 N -0.369 5.369 8 C 0.333 3.667 9 O -0.438 6.438 10 C -0.197 4.197 11 H 0.166 0.834 12 C -0.182 4.182 13 C -0.094 4.094 14 C -0.106 4.106 15 C -0.075 4.075 16 N -0.258 5.258 17 C -0.067 4.067 18 C -0.163 4.163 19 C -0.046 4.046 20 C -0.572 4.572 21 H 0.042 0.958 22 C -0.196 4.196 23 N -0.594 5.594 24 Si 0.779 3.221 25 H -0.189 1.189 26 H -0.209 1.209 27 H -0.168 1.168 28 C -0.073 4.073 29 C -0.096 4.096 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.249 0.751 37 H 0.104 0.896 38 H 0.139 0.861 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.038 0.962 48 H 0.040 0.960 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.038 0.962 52 H 0.095 0.905 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.701 14.605 -27.402 34.796 hybrid contribution 0.464 0.071 1.579 1.647 sum -15.237 14.676 -25.824 33.383 Atomic orbital electron populations 1.22289 0.90340 1.06895 1.05997 1.25226 0.93979 0.88568 0.68251 1.90416 1.72797 1.35753 1.37416 1.21635 0.83596 0.97585 0.99116 0.86754 1.22005 1.04671 1.01248 0.92969 1.45875 1.14845 1.14341 1.61834 1.19985 0.87044 0.83632 0.76078 1.90682 1.71283 1.24927 1.56921 1.22336 0.94095 1.04882 0.98399 0.83362 1.23131 1.03437 1.01556 0.90069 1.21510 0.95515 0.90140 1.02246 1.21214 0.90641 0.99378 0.99391 1.22144 0.98425 0.89275 0.97707 1.62147 1.02183 1.07992 1.53503 1.22229 0.99819 0.95351 0.89333 1.21915 0.99216 0.98938 0.96265 1.19459 0.96092 0.95836 0.93185 1.21512 1.32398 1.10872 0.92457 0.95760 1.26106 0.97332 1.01566 0.94620 1.70083 1.46193 1.41316 1.01760 0.85573 0.79273 0.78421 0.78870 1.18940 1.20948 1.16839 1.22151 0.88787 0.99779 0.96609 1.21193 0.97646 0.92213 0.98589 0.87537 0.88001 0.87244 0.92259 0.88247 0.91929 0.75072 0.89556 0.86136 0.89158 0.90293 0.95787 0.89987 0.90085 0.90786 0.93728 0.94190 0.96190 0.96026 0.92499 0.91506 0.96153 0.90495 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.73 10.33 71.24 0.74 0.01 16 2 C 0.36 3.89 6.51 29.10 0.19 4.08 16 3 O -0.49 -8.57 16.67 -1.45 -0.02 -8.59 16 4 C 0.09 1.03 2.82 44.25 0.12 1.16 16 5 H 0.11 1.46 7.58 -2.39 -0.02 1.44 16 6 C -0.15 -1.46 9.47 71.98 0.68 -0.78 16 7 N -0.72 -10.79 5.04 -446.10 -2.25 -13.03 16 8 C 0.54 10.76 7.56 87.65 0.66 11.43 16 9 O -0.56 -14.55 12.79 -3.05 -0.04 -14.59 16 10 C -0.18 -3.02 5.93 -11.61 -0.07 -3.09 16 11 H 0.15 1.73 8.14 -2.39 -0.02 1.72 16 12 C -0.14 -2.77 9.62 30.52 0.29 -2.48 16 13 C -0.09 -2.00 2.01 -52.22 -0.11 -2.11 16 14 C -0.07 -1.36 5.87 30.75 0.18 -1.18 16 15 C 0.05 1.35 4.99 86.41 0.43 1.78 16 16 N -0.54 -15.63 4.78 -895.65 -4.28 -19.91 16 17 C 0.06 1.97 5.33 86.30 0.46 2.43 16 18 C -0.12 -5.06 4.45 30.60 0.14 -4.92 16 19 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 20 C -0.53 -32.03 9.66 25.60 0.25 -31.78 16 21 H 0.02 1.61 7.99 -2.91 -0.02 1.58 16 22 C 0.00 0.01 5.47 84.66 0.46 0.47 16 23 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 24 Si 0.96 45.19 27.47 68.60 1.88 47.08 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 27 H -0.24 -10.72 6.54 99.48 0.65 -10.07 16 28 C 0.05 1.64 4.76 86.41 0.41 2.05 16 29 C -0.06 -1.56 4.32 30.75 0.13 -1.43 16 30 H 0.11 -0.02 8.00 -2.39 -0.02 -0.04 16 31 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 36 H 0.41 5.46 7.74 -92.71 -0.72 4.74 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.02 0.70 6.84 -2.39 -0.02 0.69 16 42 H 0.08 1.97 8.00 -2.39 -0.02 1.95 16 43 H 0.08 2.46 8.02 -2.39 -0.02 2.44 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.04 1.86 6.62 -2.39 -0.02 1.85 16 46 H 0.04 1.71 6.77 -2.39 -0.02 1.70 16 47 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 48 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 49 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 50 H 0.07 2.02 8.09 -2.39 -0.02 2.01 16 51 H 0.02 0.68 6.86 -2.39 -0.02 0.66 16 52 H 0.08 2.22 6.00 -2.39 -0.01 2.21 16 53 H 0.06 1.73 8.12 -2.38 -0.02 1.71 16 Total: -1.00 -76.19 413.81 0.80 -75.39 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.11 Total: 19.25 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 5.10 Total: -24.60 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -6.23 Total: -93.94 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.06 Total: -23.18 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.08 kcal Total: -76.19 0.80 -75.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043737.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.044 kcal (2) G-P(sol) polarization free energy of solvation -76.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds