Wall clock time and date at job start Tue Mar 31 2020 20:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20766 * 119.99758 * 2 1 4 4 C 1.50700 * 120.00203 * 180.02562 * 2 1 3 5 5 H 1.08998 * 109.47177 * 320.00109 * 4 2 1 6 6 C 1.53000 * 109.47189 * 79.99978 * 4 2 1 7 7 N 1.46500 * 109.47458 * 199.99601 * 4 2 1 8 8 C 1.46915 * 124.34802 * 119.99750 * 7 4 2 9 9 C 1.53835 * 105.33865 * 163.56368 * 8 7 4 10 10 C 1.53969 * 102.47166 * 24.70596 * 9 8 7 11 11 C 1.34493 * 124.34975 * 299.98213 * 7 4 2 12 12 O 1.21285 * 124.94260 * 0.41516 * 11 7 4 13 13 C 1.52237 * 110.60491 * 142.55517 * 9 8 7 14 14 C 1.53255 * 109.35493 * 66.41319 * 13 9 8 15 15 C 1.53125 * 109.07681 * 56.45605 * 14 13 9 16 16 C 1.53037 * 109.37956 * 301.73244 * 15 14 13 17 17 N 1.45968 * 110.75261 * 266.61080 * 9 8 7 18 18 C 1.46907 * 111.00130 * 60.33354 * 17 9 8 19 19 C 1.52997 * 109.47057 * 169.54802 * 18 17 9 20 20 C 1.52998 * 109.47009 * 180.02562 * 19 18 17 21 21 C 1.50697 * 109.47331 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99967 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00164 * 179.97438 * 21 20 19 24 24 N 1.31518 * 119.99990 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00104 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47078 * 90.00441 * 25 23 21 27 27 H 1.48499 * 109.47294 * 210.00426 * 25 23 21 28 28 H 1.48499 * 109.47269 * 330.00596 * 25 23 21 29 29 H 1.09000 * 109.46851 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47006 * 299.99538 * 1 2 3 31 31 H 1.08999 * 109.47319 * 59.99754 * 1 2 3 32 32 H 1.09005 * 109.46891 * 300.00334 * 6 4 2 33 33 H 1.09006 * 109.47382 * 59.99551 * 6 4 2 34 34 H 1.08992 * 109.47351 * 180.02562 * 6 4 2 35 35 H 1.09004 * 110.26956 * 44.60104 * 8 7 4 36 36 H 1.08995 * 110.34970 * 282.56828 * 8 7 4 37 37 H 1.09004 * 110.51269 * 94.53130 * 10 9 8 38 38 H 1.09005 * 110.51115 * 217.24027 * 10 9 8 39 39 H 1.09000 * 109.48794 * 186.37532 * 13 9 8 40 40 H 1.09000 * 109.49271 * 306.45133 * 13 9 8 41 41 H 1.09009 * 109.53659 * 176.33406 * 14 13 9 42 42 H 1.08995 * 109.54177 * 296.49152 * 14 13 9 43 43 H 1.09000 * 109.48848 * 181.75930 * 15 14 13 44 44 H 1.09006 * 109.48649 * 61.70461 * 15 14 13 45 45 H 1.09001 * 109.47034 * 299.76803 * 16 15 14 46 46 H 1.09000 * 109.47149 * 179.76488 * 16 15 14 47 47 H 1.08997 * 109.46714 * 289.54412 * 18 17 9 48 48 H 1.08998 * 109.46590 * 49.54521 * 18 17 9 49 49 H 1.09003 * 109.46724 * 299.99716 * 19 18 17 50 50 H 1.08998 * 109.47448 * 59.99853 * 19 18 17 51 51 H 1.09010 * 109.46686 * 299.99628 * 20 19 18 52 52 H 1.08998 * 109.47417 * 59.99488 * 20 19 18 53 53 H 0.96992 * 119.99559 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7604 -2.0137 0.6596 6 6 2.2986 -1.8714 -1.4214 7 7 3.6287 -1.0793 0.4718 8 6 4.2132 -1.7217 1.6568 9 6 5.7327 -1.5265 1.5176 10 6 5.8270 -0.2750 0.6257 11 6 4.5113 -0.2575 -0.1237 12 8 4.2860 0.4020 -1.1164 13 6 6.3657 -1.2628 2.8768 14 6 6.2393 -2.5173 3.7480 15 6 6.8826 -3.7000 3.0186 16 6 6.1955 -3.8967 1.6654 17 7 6.3437 -2.6768 0.8588 18 6 5.7909 -2.8666 -0.4890 19 6 6.6263 -3.9043 -1.2414 20 6 6.0509 -4.1015 -2.6453 21 6 6.8741 -5.1232 -3.3867 22 1 7.7230 -5.5853 -2.9049 23 6 6.5434 -5.4679 -4.6801 24 7 5.5099 -4.9047 -5.2670 25 14 7.5642 -6.7338 -5.5993 26 1 7.0058 -8.0887 -5.3593 27 1 7.5309 -6.4351 -7.0535 28 1 8.9673 -6.6840 -5.1157 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.2806 -2.0394 -1.7730 33 1 2.7986 -1.1627 -2.0818 34 1 2.8432 -2.8155 -1.4218 35 1 3.9685 -2.7838 1.6699 36 1 3.8523 -1.2403 2.5657 37 1 5.9309 0.6221 1.2361 38 1 6.6616 -0.3637 -0.0698 39 1 7.4192 -1.0158 2.7456 40 1 5.8543 -0.4308 3.3610 41 1 6.7485 -2.3542 4.6980 42 1 5.1860 -2.7295 3.9309 43 1 6.7689 -4.6028 3.6188 44 1 7.9424 -3.4981 2.8625 45 1 5.1366 -4.1022 1.8220 46 1 6.6552 -4.7357 1.1430 47 1 4.7609 -3.2149 -0.4134 48 1 5.8157 -1.9198 -1.0284 49 1 7.6564 -3.5560 -1.3169 50 1 6.6015 -4.8511 -0.7019 51 1 5.0207 -4.4497 -2.5701 52 1 6.0760 -3.1546 -3.1846 53 1 5.2776 -5.1470 -6.1770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274044194.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:06 Heat of formation + Delta-G solvation = -92.603882 kcal Electronic energy + Delta-G solvation = -31931.456632 eV Core-core repulsion = 27994.934819 eV Total energy + Delta-G solvation = -3936.521813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.65294 -40.61630 -39.23947 -36.88520 -36.41286 -34.80047 -34.74041 -32.45665 -32.07235 -30.31858 -29.15823 -28.55847 -27.01030 -25.69503 -24.99632 -23.92606 -22.46004 -21.88989 -21.58688 -19.87082 -19.44624 -18.51181 -18.16086 -17.76243 -16.72998 -16.69149 -16.41826 -16.31857 -16.12248 -15.83893 -15.68534 -15.35595 -15.01909 -14.79554 -14.59119 -14.48274 -14.14719 -13.92504 -13.74796 -13.72282 -13.53071 -13.32199 -13.21855 -13.16684 -12.97047 -12.87155 -12.83881 -12.70888 -12.65680 -12.49660 -12.32613 -12.13321 -11.66617 -11.52356 -11.43959 -11.35513 -11.22007 -10.97005 -10.86517 -10.59657 -10.57247 -9.72417 -9.19101 -8.21539 -6.33614 0.91352 1.37710 1.40040 1.51196 1.62047 1.89134 2.39022 2.78519 2.98913 3.11317 3.34145 3.38840 3.76244 3.80289 3.94750 3.97309 4.02181 4.10907 4.15239 4.23581 4.32996 4.37350 4.44670 4.48446 4.51672 4.54703 4.58934 4.61765 4.63912 4.68819 4.73747 4.80362 4.84756 4.93021 5.01732 5.05430 5.07172 5.12802 5.16674 5.16975 5.23215 5.31620 5.41531 5.48708 5.51035 5.59105 5.69947 5.82367 6.03839 6.09804 6.23713 6.27012 6.51172 6.83136 7.20698 7.36065 8.90408 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009621 B = 0.004117 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.692888 B = 6799.759371 C = 8863.050860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.337 3.663 3 O -0.482 6.482 4 C 0.102 3.898 5 H 0.158 0.842 6 C -0.156 4.156 7 N -0.615 5.615 8 C 0.075 3.925 9 C 0.112 3.888 10 C -0.147 4.147 11 C 0.513 3.487 12 O -0.568 6.568 13 C -0.094 4.094 14 C -0.115 4.115 15 C -0.111 4.111 16 C 0.047 3.953 17 N -0.523 5.523 18 C 0.075 3.925 19 C -0.088 4.088 20 C 0.033 3.967 21 C -0.542 4.542 22 H 0.061 0.939 23 C 0.000 4.000 24 N -0.934 5.934 25 Si 0.966 3.034 26 H -0.268 1.268 27 H -0.284 1.284 28 H -0.263 1.263 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.030 0.970 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.067 0.933 47 H 0.029 0.971 48 H 0.042 0.958 49 H 0.047 0.953 50 H 0.059 0.941 51 H -0.011 1.011 52 H -0.025 1.025 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.851 4.373 24.354 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.213 3.787 3 O -0.356 6.356 4 C -0.001 4.001 5 H 0.175 0.825 6 C -0.214 4.214 7 N -0.349 5.349 8 C -0.048 4.048 9 C 0.021 3.979 10 C -0.188 4.188 11 C 0.302 3.698 12 O -0.446 6.446 13 C -0.132 4.132 14 C -0.153 4.153 15 C -0.149 4.149 16 C -0.080 4.080 17 N -0.247 5.247 18 C -0.053 4.053 19 C -0.126 4.126 20 C -0.004 4.004 21 C -0.580 4.580 22 H 0.079 0.921 23 C -0.198 4.198 24 N -0.574 5.574 25 Si 0.790 3.210 26 H -0.193 1.193 27 H -0.209 1.209 28 H -0.187 1.187 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.047 0.953 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.078 0.922 51 H 0.008 0.992 52 H -0.007 1.007 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.302 5.349 23.627 25.301 hybrid contribution -0.436 -0.570 -1.628 1.779 sum -7.738 4.779 21.999 23.805 Atomic orbital electron populations 1.22253 0.89955 1.07044 1.05497 1.25692 0.94112 0.89595 0.69333 1.90465 1.73033 1.36126 1.35992 1.21787 0.82296 0.97727 0.98296 0.82496 1.21977 1.04249 1.00522 0.94652 1.48327 1.12067 1.45319 1.29141 1.23068 0.94620 0.99279 0.87837 1.21445 0.91087 0.89694 0.95644 1.22512 0.95162 1.00837 1.00240 1.21294 0.87447 0.77718 0.83326 1.90680 1.81753 1.44855 1.27318 1.21478 1.01807 0.99339 0.90530 1.21621 1.01744 0.93398 0.98494 1.21576 1.00145 0.99522 0.93664 1.22299 0.99524 0.91357 0.94822 1.61818 1.56739 1.04632 1.01496 1.21955 0.95919 0.98061 0.89355 1.21397 0.98526 0.97519 0.95154 1.18882 0.94876 0.94301 0.92389 1.21659 1.13659 1.23507 0.99143 0.92073 1.26013 0.96416 0.98718 0.98667 1.70122 1.28777 1.44526 1.13986 0.85432 0.79258 0.78961 0.77326 1.19288 1.20911 1.18720 0.86738 0.87335 0.88960 0.87793 0.95106 0.92246 0.89273 0.87903 0.85582 0.89085 0.90558 0.89049 0.89618 0.90885 0.89862 0.91781 0.93845 0.91437 0.95263 0.93964 0.93458 0.92217 0.99228 1.00707 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.50 10.33 71.23 0.74 -1.76 16 2 C 0.34 8.15 6.42 29.10 0.19 8.34 16 3 O -0.48 -16.88 14.83 19.07 0.28 -16.59 16 4 C 0.10 2.36 3.13 44.25 0.14 2.49 16 5 H 0.16 2.06 8.07 -2.39 -0.02 2.04 16 6 C -0.16 -4.50 9.18 71.98 0.66 -3.84 16 7 N -0.61 -16.45 2.08 -798.78 -1.66 -18.11 16 8 C 0.08 1.43 4.75 86.58 0.41 1.84 16 9 C 0.11 2.39 0.71 4.06 0.00 2.39 16 10 C -0.15 -4.05 5.44 30.41 0.17 -3.89 16 11 C 0.51 17.93 4.83 87.93 0.42 18.35 16 12 O -0.57 -25.94 14.74 17.50 0.26 -25.68 16 13 C -0.09 -1.31 4.66 30.43 0.14 -1.17 16 14 C -0.12 -1.26 5.81 30.72 0.18 -1.08 16 15 C -0.11 -1.68 6.07 30.65 0.19 -1.50 16 16 C 0.05 1.02 5.06 86.30 0.44 1.46 16 17 N -0.52 -13.97 4.46 -846.53 -3.77 -17.75 16 18 C 0.07 2.70 3.55 86.30 0.31 3.00 16 19 C -0.09 -3.81 5.09 30.59 0.16 -3.65 16 20 C 0.03 1.84 4.97 29.85 0.15 1.99 16 21 C -0.54 -31.94 9.11 25.60 0.23 -31.71 16 22 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 23 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 24 N -0.93 -58.84 13.29 21.45 0.28 -58.55 16 25 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 28 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 29 H 0.11 0.76 8.00 -2.39 -0.02 0.74 16 30 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.03 1.18 6.80 -2.38 -0.02 1.16 16 34 H 0.06 1.91 7.40 -2.39 -0.02 1.90 16 35 H 0.09 1.57 5.75 -2.39 -0.01 1.55 16 36 H 0.10 1.37 7.78 -2.39 -0.02 1.35 16 37 H 0.13 2.83 7.86 -2.38 -0.02 2.81 16 38 H 0.09 2.91 7.40 -2.38 -0.02 2.89 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 0.95 8.05 -2.39 -0.02 0.93 16 41 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.07 0.65 7.59 -2.39 -0.02 0.63 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.04 0.86 6.19 -2.39 -0.01 0.85 16 46 H 0.07 1.73 6.27 -2.39 -0.01 1.72 16 47 H 0.03 1.06 6.32 -2.39 -0.02 1.04 16 48 H 0.04 1.77 5.15 -2.39 -0.01 1.76 16 49 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.06 2.42 6.46 -2.39 -0.02 2.40 16 51 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 52 H -0.03 -1.60 8.14 -2.39 -0.02 -1.62 16 53 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -85.37 397.38 3.28 -82.10 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.88 Total: 15.52 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 4.98 Total: -8.29 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -5.15 Total: -94.41 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: 0.54 Total: -42.27 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -85.37 3.28 -82.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274044194.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.508 kcal (2) G-P(sol) polarization free energy of solvation -85.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds