Wall clock time and date at job start Tue Mar 31 2020 20:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46509 * 109.46751 * 162.19458 * 3 2 1 5 5 C 1.34785 * 119.99458 * 275.28256 * 4 3 2 6 6 O 1.21273 * 119.99957 * 3.20079 * 5 4 3 7 7 C 1.50699 * 119.99447 * 183.20476 * 5 4 3 8 8 H 1.09006 * 109.47208 * 306.93419 * 7 5 4 9 9 C 1.52996 * 109.47248 * 66.93685 * 7 5 4 10 10 C 1.53000 * 109.46859 * 186.93756 * 7 5 4 11 11 H 1.09006 * 109.46935 * 299.99830 * 10 7 5 12 12 C 1.53001 * 109.47373 * 179.97438 * 10 7 5 13 13 C 1.53004 * 109.47122 * 59.99723 * 10 7 5 14 14 O 1.42900 * 109.47057 * 184.99840 * 13 10 7 15 15 C 1.42901 * 114.00116 * 179.97438 * 14 13 10 16 16 C 1.46496 * 120.00318 * 95.28278 * 4 3 2 17 17 C 1.53036 * 109.46028 * 53.51576 * 16 4 3 18 18 C 1.53193 * 109.31605 * 178.61573 * 17 16 4 19 19 N 1.46927 * 108.89185 * 54.56116 * 18 17 16 20 20 C 1.36930 * 120.62845 * 126.46521 * 19 18 17 21 21 H 1.08005 * 120.00324 * 324.07560 * 20 19 18 22 22 C 1.38810 * 120.00270 * 144.07726 * 20 19 18 23 23 N 1.31619 * 119.99814 * 356.29284 * 22 20 19 24 24 Si 1.86799 * 120.00341 * 176.28938 * 22 20 19 25 25 H 1.48500 * 109.47089 * 60.00060 * 24 22 20 26 26 H 1.48500 * 109.47229 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47049 * 300.00040 * 24 22 20 28 28 C 1.46964 * 118.71509 * 306.64690 * 19 18 17 29 29 C 1.53038 * 109.45699 * 293.45034 * 16 4 3 30 30 H 4.40642 * 5.51368 * 180.02562 * 4 1 2 31 31 H 1.08991 * 109.47510 * 42.19341 * 3 2 1 32 32 H 1.08997 * 109.47410 * 282.18733 * 3 2 1 33 33 H 1.09007 * 109.47046 * 184.43490 * 9 7 5 34 34 H 1.08997 * 109.47061 * 304.43429 * 9 7 5 35 35 H 1.08999 * 109.47116 * 64.43943 * 9 7 5 36 36 H 1.08994 * 109.47164 * 180.02562 * 12 10 7 37 37 H 1.09000 * 109.46854 * 300.00313 * 12 10 7 38 38 H 1.09003 * 109.46643 * 59.99921 * 12 10 7 39 39 H 1.08996 * 109.47322 * 304.99864 * 13 10 7 40 40 H 1.09000 * 109.46962 * 65.00351 * 13 10 7 41 41 H 1.08994 * 109.47402 * 180.02562 * 15 14 13 42 42 H 1.09004 * 109.47296 * 300.00411 * 15 14 13 43 43 H 1.09000 * 109.46882 * 60.00037 * 15 14 13 44 44 H 1.08995 * 109.45899 * 173.49088 * 16 4 3 45 45 H 1.09004 * 109.49846 * 58.66056 * 17 16 4 46 46 H 1.09003 * 109.49786 * 298.56894 * 17 16 4 47 47 H 1.08993 * 109.58944 * 174.42757 * 18 17 16 48 48 H 1.08998 * 109.58168 * 294.70615 * 18 17 16 49 49 H 0.96997 * 120.00533 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.46403 * 293.56950 * 28 19 18 51 51 H 1.08998 * 109.70512 * 173.28752 * 28 19 18 52 52 H 1.09003 * 109.50162 * 301.33166 * 29 16 4 53 53 H 1.08990 * 109.50063 * 61.40255 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3160 -0.4224 5 6 3.2568 1.5996 -1.7343 6 8 2.9094 0.7876 -2.5654 7 6 3.8263 2.9257 -2.1682 8 1 3.2783 3.7330 -1.6823 9 6 5.3023 3.0009 -1.7726 10 6 3.6976 3.0636 -3.6866 11 1 4.2456 2.2563 -4.1725 12 6 4.2751 4.4102 -4.1272 13 6 2.2215 2.9884 -4.0822 14 8 2.1089 3.0002 -5.5067 15 6 0.7637 2.9325 -5.9840 16 6 3.4875 2.3230 0.5811 17 6 4.4899 1.7258 1.5713 18 6 4.8839 2.7918 2.5985 19 7 3.6651 3.3254 3.2218 20 6 3.5272 3.3403 4.5840 21 1 3.9305 2.5324 5.1766 22 6 2.8692 4.3939 5.2036 23 7 2.4420 5.4138 4.4898 24 14 2.5900 4.3642 7.0503 25 1 3.8993 4.2991 7.7480 26 1 1.8699 5.5960 7.4620 27 1 1.7781 3.1736 7.4091 28 6 2.5953 3.8388 2.3547 29 6 2.2270 2.7610 1.3303 30 1 -1.0502 -0.0004 0.0003 31 1 3.0098 -0.7605 -0.6901 32 1 3.0095 -0.2161 1.0045 33 1 5.6937 3.9889 -2.0153 34 1 5.4009 2.8241 -0.7016 35 1 5.8640 2.2434 -2.3192 36 1 4.1830 4.5086 -5.2087 37 1 3.7268 5.2172 -3.6412 38 1 5.3267 4.4642 -3.8453 39 1 1.7869 2.0685 -3.6910 40 1 1.6904 3.8457 -3.6687 41 1 0.7638 2.9458 -7.0739 42 1 0.2992 2.0112 -5.6323 43 1 0.2019 3.7884 -5.6099 44 1 3.9347 3.1859 0.0876 45 1 5.3778 1.3926 1.0339 46 1 4.0345 0.8780 2.0832 47 1 5.5199 2.3453 3.3629 48 1 5.4225 3.5978 2.1003 49 1 1.9825 6.1503 4.9226 50 1 2.9451 4.7316 1.8362 51 1 1.7206 4.0850 2.9567 52 1 1.5042 3.1649 0.6213 53 1 1.7927 1.9035 1.8439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278157792.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:37 Heat of formation + Delta-G solvation = -25.299525 kcal Electronic energy + Delta-G solvation = -31306.091179 eV Core-core repulsion = 27372.487902 eV Total energy + Delta-G solvation = -3933.603277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.77839 -39.50245 -38.75721 -36.92777 -36.52358 -34.55384 -33.62712 -31.80943 -31.48207 -31.17569 -28.64465 -27.96925 -27.07248 -26.79050 -24.75221 -23.81585 -23.68041 -21.91312 -20.90616 -20.10313 -19.08715 -18.64710 -18.31893 -17.48445 -17.01389 -16.88385 -16.76517 -16.50363 -15.99784 -15.68572 -15.48847 -15.24297 -14.83053 -14.71990 -14.68059 -14.35127 -14.20797 -14.09132 -13.84031 -13.53879 -13.29545 -13.14136 -12.92360 -12.84404 -12.69882 -12.63434 -12.41257 -12.39116 -12.23109 -12.08921 -11.96458 -11.89844 -11.69014 -11.60768 -11.53779 -11.43693 -11.33955 -11.05679 -10.73783 -10.52731 -10.41050 -9.78631 -8.52193 -7.84980 -5.39821 1.39192 1.49382 1.49752 1.56163 1.58825 1.88827 2.36868 2.52025 2.77822 3.32113 3.40902 3.50357 3.72043 3.79071 3.82203 3.87055 4.06866 4.13481 4.28865 4.29053 4.37294 4.39462 4.45301 4.47757 4.50150 4.51719 4.52938 4.70002 4.72160 4.78125 4.79827 4.85027 4.89677 4.93503 4.99883 5.02441 5.04013 5.09227 5.12507 5.18818 5.20121 5.34621 5.40267 5.43187 5.49102 5.59573 5.68729 5.78640 6.19968 6.35402 6.47758 6.65407 7.10513 7.21124 7.88743 8.42406 9.20470 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.003164 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.654273 B = 8847.081952 C = 9292.411541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.225 4.225 3 C 0.219 3.781 4 N -0.596 5.596 5 C 0.518 3.482 6 O -0.566 6.566 7 C -0.102 4.102 8 H 0.101 0.899 9 C -0.148 4.148 10 C -0.063 4.063 11 H 0.072 0.928 12 C -0.140 4.140 13 C 0.060 3.940 14 O -0.406 6.406 15 C 0.027 3.973 16 C 0.146 3.854 17 C -0.131 4.131 18 C 0.145 3.855 19 N -0.609 5.609 20 C -0.264 4.264 21 H 0.063 0.937 22 C -0.041 4.041 23 N -0.932 5.932 24 Si 0.963 3.037 25 H -0.275 1.275 26 H -0.296 1.296 27 H -0.280 1.280 28 C 0.186 3.814 29 C -0.131 4.131 30 H 0.241 0.759 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.103 0.897 42 H 0.035 0.965 43 H 0.048 0.952 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.027 0.973 49 H 0.250 0.750 50 H 0.006 0.994 51 H 0.049 0.951 52 H 0.051 0.949 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 -5.530 -15.687 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.227 4.227 3 C 0.098 3.902 4 N -0.326 5.326 5 C 0.308 3.692 6 O -0.445 6.445 7 C -0.124 4.124 8 H 0.119 0.881 9 C -0.205 4.205 10 C -0.082 4.082 11 H 0.091 0.909 12 C -0.197 4.197 13 C -0.017 4.017 14 O -0.325 6.325 15 C -0.069 4.069 16 C 0.044 3.956 17 C -0.171 4.171 18 C 0.020 3.980 19 N -0.333 5.333 20 C -0.394 4.394 21 H 0.080 0.920 22 C -0.237 4.237 23 N -0.577 5.577 24 Si 0.791 3.209 25 H -0.200 1.200 26 H -0.222 1.222 27 H -0.206 1.206 28 C 0.060 3.940 29 C -0.171 4.171 30 H 0.257 0.743 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.121 0.879 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.127 0.873 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.045 0.955 49 H 0.059 0.941 50 H 0.024 0.976 51 H 0.068 0.932 52 H 0.069 0.931 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.063 -5.802 -16.176 17.308 hybrid contribution -1.277 0.135 1.421 1.915 sum 0.786 -5.667 -14.755 15.825 Atomic orbital electron populations 1.25649 0.96878 0.98334 1.00641 1.24003 0.95846 1.02009 1.00808 1.18357 0.83472 0.85764 1.02641 1.48239 1.63981 1.14518 1.05839 1.21152 0.77023 0.89575 0.81493 1.90640 1.51007 1.51021 1.51881 1.21369 1.00057 0.94178 0.96747 0.88111 1.22000 0.91465 1.04507 1.02570 1.20833 0.94609 1.00103 0.92648 0.90949 1.21813 1.01650 0.94567 1.01658 1.22769 0.97787 1.00010 0.81121 1.87779 1.27903 1.95270 1.21578 1.22876 0.82838 1.00114 1.01096 1.21363 0.95131 0.90718 0.88432 1.22304 0.98860 0.99098 0.96799 1.21024 0.88417 0.94149 0.94457 1.44196 1.14334 1.72878 1.01890 1.19374 1.34425 1.02040 0.83606 0.91970 1.25967 1.01316 0.94990 1.01453 1.70069 1.42738 1.09207 1.35684 0.85430 0.77897 0.76491 0.81095 1.20048 1.22187 1.20598 1.20479 0.92040 0.91496 0.89990 1.22351 0.97033 0.99775 0.97940 0.74279 0.88035 0.86824 0.89037 0.90983 0.91500 0.92186 0.92280 0.90538 0.93585 0.93604 0.87906 0.94611 0.93370 0.87339 0.89132 0.92064 0.92264 0.95496 0.94123 0.97634 0.93221 0.93053 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.33 19.25 74.32 1.43 -3.90 16 2 C -0.23 -6.69 12.56 31.12 0.39 -6.29 16 3 C 0.22 5.86 5.29 84.57 0.45 6.31 16 4 N -0.60 -16.09 2.36 -808.18 -1.91 -18.00 16 5 C 0.52 14.42 6.46 87.66 0.57 14.98 16 6 O -0.57 -18.98 13.68 -3.01 -0.04 -19.02 16 7 C -0.10 -2.30 1.46 -11.54 -0.02 -2.32 16 8 H 0.10 2.25 7.40 -2.38 -0.02 2.23 16 9 C -0.15 -2.68 8.24 71.98 0.59 -2.09 16 10 C -0.06 -1.44 1.84 -10.79 -0.02 -1.46 16 11 H 0.07 1.86 8.02 -2.38 -0.02 1.84 16 12 C -0.14 -2.56 8.74 71.98 0.63 -1.93 16 13 C 0.06 1.54 5.06 71.98 0.36 1.91 16 14 O -0.41 -10.52 10.24 -148.98 -1.53 -12.05 16 15 C 0.03 0.53 11.01 113.37 1.25 1.78 16 16 C 0.15 4.13 1.52 45.02 0.07 4.20 16 17 C -0.13 -3.65 4.90 30.67 0.15 -3.50 16 18 C 0.15 5.21 6.51 86.36 0.56 5.77 16 19 N -0.61 -28.16 2.98 -699.00 -2.08 -30.25 16 20 C -0.26 -13.75 9.54 84.03 0.80 -12.95 16 21 H 0.06 3.17 7.83 -2.91 -0.02 3.14 16 22 C -0.04 -2.21 5.17 84.86 0.44 -1.77 16 23 N -0.93 -52.84 11.03 21.65 0.24 -52.60 16 24 Si 0.96 43.39 29.56 68.60 2.03 45.42 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 28 C 0.19 8.37 5.21 86.36 0.45 8.82 16 29 C -0.13 -4.64 5.06 30.67 0.16 -4.49 16 30 H 0.24 4.65 7.80 -4.41 -0.03 4.61 16 31 H 0.10 2.62 7.63 -2.39 -0.02 2.60 16 32 H 0.11 2.78 6.13 -2.39 -0.01 2.77 16 33 H 0.09 1.34 6.68 -2.38 -0.02 1.32 16 34 H 0.07 1.35 5.06 -2.39 -0.01 1.34 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.16 7.82 -2.39 -0.02 1.14 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.14 6.53 -2.39 -0.02 1.12 16 39 H 0.05 1.42 5.67 -2.39 -0.01 1.41 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.11 2.88 4.31 -2.39 -0.01 2.87 16 45 H 0.09 2.00 7.77 -2.39 -0.02 1.98 16 46 H 0.06 1.78 6.52 -2.39 -0.02 1.77 16 47 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 48 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 50 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 51 H 0.05 2.62 6.26 -2.39 -0.01 2.61 16 52 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 53 H 0.05 1.80 7.32 -2.39 -0.02 1.79 16 Total: -1.00 -66.06 407.29 5.85 -60.21 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.88 Total: 23.22 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 8.26 Total: 3.07 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -3.75 Total: -100.85 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -1.57 Total: -31.07 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -66.06 5.85 -60.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278157792.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.908 kcal (2) G-P(sol) polarization free energy of solvation -66.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds