Wall clock time and date at job start Tue Mar 31 2020 20:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47255 * 297.87391 * 3 2 1 5 5 C 1.34776 * 120.00187 * 84.36464 * 4 3 2 6 6 O 1.21285 * 119.99585 * 355.18856 * 5 4 3 7 7 C 1.50699 * 120.00328 * 175.46283 * 5 4 3 8 8 H 1.09002 * 109.47047 * 315.77593 * 7 5 4 9 9 C 1.53005 * 109.47123 * 75.77485 * 7 5 4 10 10 C 1.52999 * 109.47151 * 195.77436 * 7 5 4 11 11 H 1.09002 * 109.47273 * 300.00018 * 10 7 5 12 12 C 1.53000 * 109.47017 * 60.00372 * 10 7 5 13 13 C 1.53002 * 109.47126 * 179.97438 * 10 7 5 14 14 O 1.42900 * 109.47160 * 174.99918 * 13 10 7 15 15 C 1.42904 * 113.99753 * 180.02562 * 14 13 10 16 16 C 1.46499 * 120.00057 * 264.36542 * 4 3 2 17 17 C 1.53038 * 109.46035 * 53.66787 * 16 4 3 18 18 C 1.53197 * 109.31248 * 178.61643 * 17 16 4 19 19 N 1.46924 * 108.77603 * 54.63628 * 18 17 16 20 20 C 1.36938 * 120.63027 * 126.41871 * 19 18 17 21 21 H 1.07998 * 119.99843 * 329.71647 * 20 19 18 22 22 C 1.38817 * 119.99897 * 149.72394 * 20 19 18 23 23 N 1.31618 * 119.99829 * 345.06160 * 22 20 19 24 24 Si 1.86796 * 119.99689 * 165.06235 * 22 20 19 25 25 H 1.48500 * 109.47273 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46958 * 119.99840 * 24 22 20 27 27 H 1.48506 * 109.46905 * 239.99611 * 24 22 20 28 28 C 1.46932 * 118.73737 * 306.38784 * 19 18 17 29 29 C 1.53040 * 109.46013 * 293.59901 * 16 4 3 30 30 H 4.40636 * 5.51323 * 179.97438 * 4 1 2 31 31 H 1.09001 * 109.46814 * 177.87711 * 3 2 1 32 32 H 1.08997 * 109.47403 * 57.88072 * 3 2 1 33 33 H 1.08997 * 109.46654 * 303.32721 * 9 7 5 34 34 H 1.08994 * 109.46789 * 63.32238 * 9 7 5 35 35 H 1.08996 * 109.47044 * 183.32308 * 9 7 5 36 36 H 1.09000 * 109.46840 * 299.99728 * 12 10 7 37 37 H 1.08995 * 109.47742 * 59.99529 * 12 10 7 38 38 H 1.08996 * 109.46976 * 180.02562 * 12 10 7 39 39 H 1.08993 * 109.47272 * 295.00489 * 13 10 7 40 40 H 1.08999 * 109.46450 * 54.99959 * 13 10 7 41 41 H 1.08998 * 109.46897 * 180.02562 * 15 14 13 42 42 H 1.09002 * 109.47207 * 300.00372 * 15 14 13 43 43 H 1.09001 * 109.47031 * 60.00323 * 15 14 13 44 44 H 1.09001 * 109.46028 * 173.63075 * 16 4 3 45 45 H 1.09002 * 109.49947 * 298.56300 * 17 16 4 46 46 H 1.08997 * 109.49609 * 58.66622 * 17 16 4 47 47 H 1.09003 * 109.58281 * 294.84540 * 18 17 16 48 48 H 1.09001 * 109.70034 * 174.49569 * 18 17 16 49 49 H 0.97005 * 119.99396 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.58898 * 293.82598 * 28 19 18 51 51 H 1.08998 * 109.70005 * 173.46457 * 28 19 18 52 52 H 1.08994 * 109.50074 * 301.33759 * 29 16 4 53 53 H 1.09004 * 109.49826 * 61.43619 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6449 1.2209 5 6 3.2518 -1.9865 1.2733 6 8 2.8713 -2.6652 0.3429 7 6 3.8499 -2.6437 2.4904 8 1 4.7404 -2.0958 2.7986 9 6 2.8273 -2.6365 3.6284 10 6 4.2300 -4.0874 2.1555 11 1 3.3395 -4.6354 1.8473 12 6 5.2527 -4.0947 1.0175 13 6 4.8378 -4.7545 3.3910 14 8 5.0854 -6.1344 3.1140 15 6 5.6557 -6.8538 4.2092 16 6 3.4959 0.1679 2.3850 17 6 2.3234 1.0797 2.7539 18 6 2.6920 1.9031 3.9921 19 7 3.9503 2.6146 3.7296 20 6 4.0337 3.9707 3.9003 21 1 3.1618 4.5890 3.7462 22 6 5.2391 4.5507 4.2712 23 7 6.2131 3.8007 4.7416 24 14 5.4788 6.3956 4.1028 25 1 4.2424 7.0072 3.5528 26 1 5.7701 6.9806 5.4363 27 1 6.6147 6.6654 3.1850 28 6 5.1177 1.8433 3.2810 29 6 4.7220 1.0206 2.0508 30 1 -1.0499 0.0001 0.0002 31 1 3.0088 1.0278 -0.0381 32 1 3.0096 -0.5455 -0.8703 33 1 2.5123 -1.6121 3.8272 34 1 1.9615 -3.2338 3.3427 35 1 3.2795 -3.0583 4.5260 36 1 4.8200 -3.6193 0.1372 37 1 6.1431 -3.5467 1.3256 38 1 5.5231 -5.1232 0.7786 39 1 5.7757 -4.2612 3.6459 40 1 4.1441 -4.6705 4.2275 41 1 5.8134 -7.8925 3.9189 42 1 6.6105 -6.4040 4.4815 43 1 4.9786 -6.8134 5.0624 44 1 3.7264 -0.4853 3.2266 45 1 2.1083 1.7504 1.9219 46 1 1.4442 0.4726 2.9691 47 1 2.8189 1.2395 4.8475 48 1 1.9017 2.6237 4.2027 49 1 7.0553 4.2061 5.0011 50 1 5.4425 1.1749 4.0784 51 1 5.9291 2.5229 3.0206 52 1 5.5498 0.3716 1.7656 53 1 4.4843 1.6919 1.2254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278157804.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:42 Heat of formation + Delta-G solvation = -26.679892 kcal Electronic energy + Delta-G solvation = -31114.825690 eV Core-core repulsion = 27181.162556 eV Total energy + Delta-G solvation = -3933.663134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.73015 -39.47415 -38.87117 -36.93986 -36.34733 -34.51501 -33.64532 -31.81629 -31.59188 -31.22310 -28.66206 -28.12982 -26.94800 -26.27385 -25.11004 -23.84234 -23.71055 -21.91109 -20.90101 -20.11162 -19.11002 -18.53669 -18.46288 -17.42821 -16.96943 -16.84118 -16.60469 -16.37375 -15.98835 -15.65314 -15.34126 -15.10906 -14.99335 -14.74751 -14.72151 -14.52707 -14.33689 -14.10645 -13.85202 -13.52593 -13.30109 -13.15281 -13.10422 -12.98055 -12.64508 -12.59937 -12.47587 -12.36233 -12.09964 -11.98551 -11.86937 -11.84977 -11.83779 -11.56690 -11.52856 -11.47254 -11.34590 -11.05287 -10.63668 -10.54501 -10.46049 -9.78219 -8.62498 -7.85484 -5.31908 1.42131 1.47486 1.50854 1.59445 1.59656 1.92932 2.36377 2.52975 2.86125 3.30955 3.40627 3.52815 3.69965 3.76640 3.80570 3.90752 4.05966 4.09468 4.27525 4.29326 4.33125 4.40808 4.46497 4.49211 4.52192 4.54213 4.58063 4.66311 4.68352 4.80498 4.81123 4.83745 4.87166 4.89129 4.93516 5.00710 5.06071 5.07385 5.10372 5.16348 5.25789 5.30896 5.34198 5.38555 5.45716 5.57679 5.69131 5.78383 6.27396 6.36678 6.44008 6.69464 7.12718 7.19325 7.88964 8.40155 9.20800 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011683 B = 0.003356 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.149362 B = 8341.064592 C = 9887.033396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.227 4.227 3 C 0.221 3.779 4 N -0.597 5.597 5 C 0.524 3.476 6 O -0.566 6.566 7 C -0.102 4.102 8 H 0.108 0.892 9 C -0.150 4.150 10 C -0.064 4.064 11 H 0.068 0.932 12 C -0.144 4.144 13 C 0.065 3.935 14 O -0.413 6.413 15 C 0.025 3.975 16 C 0.148 3.852 17 C -0.122 4.122 18 C 0.147 3.853 19 N -0.608 5.608 20 C -0.260 4.260 21 H 0.062 0.938 22 C -0.043 4.043 23 N -0.930 5.930 24 Si 0.960 3.040 25 H -0.270 1.270 26 H -0.293 1.293 27 H -0.291 1.291 28 C 0.183 3.817 29 C -0.137 4.137 30 H 0.245 0.755 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.106 0.894 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.025 0.975 48 H 0.054 0.946 49 H 0.250 0.750 50 H 0.008 0.992 51 H 0.053 0.947 52 H 0.070 0.930 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.719 -15.856 -2.989 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.228 4.228 3 C 0.100 3.900 4 N -0.328 5.328 5 C 0.314 3.686 6 O -0.445 6.445 7 C -0.123 4.123 8 H 0.126 0.874 9 C -0.207 4.207 10 C -0.083 4.083 11 H 0.087 0.913 12 C -0.201 4.201 13 C -0.011 4.011 14 O -0.333 6.333 15 C -0.071 4.071 16 C 0.045 3.955 17 C -0.162 4.162 18 C 0.021 3.979 19 N -0.332 5.332 20 C -0.390 4.390 21 H 0.080 0.920 22 C -0.239 4.239 23 N -0.575 5.575 24 Si 0.788 3.212 25 H -0.194 1.194 26 H -0.220 1.220 27 H -0.218 1.218 28 C 0.057 3.943 29 C -0.177 4.177 30 H 0.261 0.739 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.124 0.876 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.043 0.957 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.027 0.973 51 H 0.072 0.928 52 H 0.089 0.911 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.793 -16.238 -3.598 17.308 hybrid contribution 0.282 1.360 0.207 1.404 sum -4.511 -14.878 -3.391 15.912 Atomic orbital electron populations 1.25645 0.96738 0.99910 0.98361 1.23822 0.95537 1.01303 1.02121 1.18235 0.83984 0.99658 0.88160 1.48224 1.64083 1.05851 1.14593 1.20944 0.77402 0.81516 0.88763 1.90651 1.50429 1.63265 1.40182 1.21322 1.00831 0.96410 0.93760 0.87441 1.21968 0.98240 1.03224 0.97246 1.20774 0.99233 0.92921 0.95325 0.91330 1.21791 0.98198 1.02026 0.98066 1.22671 0.99936 0.81712 0.96802 1.87834 1.83673 1.22209 1.39558 1.22913 0.97473 0.97253 0.89434 1.21308 0.94626 0.92372 0.87186 1.22167 0.96993 0.97802 0.99201 1.20983 0.88453 0.94259 0.94245 1.44285 1.08114 1.03662 1.77136 1.19448 0.96530 0.83658 1.39390 0.92034 1.25733 0.98088 1.01248 0.98864 1.70134 1.05494 1.35568 1.46351 0.85328 0.77654 0.81331 0.76839 1.19418 1.22032 1.21810 1.20514 0.89798 0.92435 0.91555 1.22424 0.97227 0.98352 0.99702 0.73900 0.87452 0.88579 0.91576 0.92150 0.88965 0.93299 0.92360 0.92286 0.92199 0.91461 0.88711 0.93317 0.93107 0.87596 0.92632 0.91177 0.95719 0.92785 0.94117 0.97347 0.92826 0.91093 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.56 19.25 74.32 1.43 -3.13 16 2 C -0.23 -6.31 12.61 31.12 0.39 -5.92 16 3 C 0.22 6.01 4.99 84.57 0.42 6.43 16 4 N -0.60 -16.30 2.36 -808.18 -1.91 -18.21 16 5 C 0.52 14.72 6.23 87.66 0.55 15.27 16 6 O -0.57 -19.21 14.15 -3.05 -0.04 -19.25 16 7 C -0.10 -2.29 1.45 -11.54 -0.02 -2.31 16 8 H 0.11 2.26 7.25 -2.39 -0.02 2.24 16 9 C -0.15 -2.90 8.33 71.98 0.60 -2.30 16 10 C -0.06 -1.44 1.83 -10.79 -0.02 -1.46 16 11 H 0.07 1.82 7.93 -2.39 -0.02 1.80 16 12 C -0.14 -3.46 8.78 71.98 0.63 -2.83 16 13 C 0.07 1.23 5.10 71.98 0.37 1.60 16 14 O -0.41 -8.76 10.24 -148.98 -1.53 -10.29 16 15 C 0.03 0.36 11.01 113.37 1.25 1.61 16 16 C 0.15 4.19 1.62 45.02 0.07 4.26 16 17 C -0.12 -3.71 4.69 30.67 0.14 -3.57 16 18 C 0.15 5.47 6.52 86.36 0.56 6.03 16 19 N -0.61 -28.04 2.98 -699.07 -2.09 -30.13 16 20 C -0.26 -13.53 9.57 84.03 0.80 -12.73 16 21 H 0.06 3.18 7.87 -2.91 -0.02 3.16 16 22 C -0.04 -2.31 4.95 84.86 0.42 -1.89 16 23 N -0.93 -52.10 11.23 21.65 0.24 -51.85 16 24 Si 0.96 43.29 29.58 68.60 2.03 45.32 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 27 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 28 C 0.18 7.92 5.27 86.36 0.46 8.38 16 29 C -0.14 -4.51 5.42 30.67 0.17 -4.34 16 30 H 0.24 3.88 7.80 -4.42 -0.03 3.85 16 31 H 0.11 2.79 6.57 -2.39 -0.02 2.77 16 32 H 0.10 2.60 7.67 -2.39 -0.02 2.58 16 33 H 0.07 1.36 6.09 -2.39 -0.01 1.35 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.39 6.50 -2.39 -0.02 1.38 16 36 H 0.05 1.37 6.12 -2.39 -0.01 1.35 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.42 7.82 -2.39 -0.02 1.40 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.07 6.25 -2.39 -0.01 1.06 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 44 H 0.11 2.81 4.29 -2.39 -0.01 2.80 16 45 H 0.05 1.82 7.12 -2.39 -0.02 1.80 16 46 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 49 H 0.25 13.62 8.31 -92.70 -0.77 12.84 16 50 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 51 H 0.05 2.71 6.17 -2.39 -0.01 2.69 16 52 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 53 H 0.05 1.89 7.02 -2.38 -0.02 1.87 16 Total: -1.00 -65.24 409.61 5.81 -59.43 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.87 Total: 21.89 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 8.23 Total: 3.08 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -3.75 Total: -100.19 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -1.57 Total: -29.54 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -65.24 5.81 -59.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278157804.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.748 kcal (2) G-P(sol) polarization free energy of solvation -65.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds