Wall clock time and date at job start Tue Mar 31 2020 20:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46716 * 78.25456 * 3 2 1 5 5 C 1.34776 * 119.99819 * 84.78129 * 4 3 2 6 6 O 1.21279 * 120.00179 * 356.69012 * 5 4 3 7 7 C 1.50704 * 119.99243 * 176.41240 * 5 4 3 8 8 H 1.08992 * 109.47298 * 53.50280 * 7 5 4 9 9 C 1.52998 * 109.47308 * 293.49567 * 7 5 4 10 10 C 1.53008 * 109.46580 * 173.50076 * 7 5 4 11 11 H 1.08999 * 109.47105 * 59.99702 * 10 7 5 12 12 C 1.52998 * 109.46884 * 299.99751 * 10 7 5 13 13 C 1.53000 * 109.47014 * 180.02562 * 10 7 5 14 14 O 1.42900 * 109.47042 * 184.99880 * 13 10 7 15 15 C 1.42897 * 113.99761 * 180.02562 * 14 13 10 16 16 C 1.46499 * 119.99639 * 264.77796 * 4 3 2 17 17 C 1.53033 * 109.45971 * 66.44858 * 16 4 3 18 18 C 1.53202 * 109.31279 * 178.61262 * 17 16 4 19 19 N 1.46922 * 108.77245 * 54.63466 * 18 17 16 20 20 C 1.36937 * 120.63177 * 126.41700 * 19 18 17 21 21 H 1.08004 * 119.99722 * 323.70822 * 20 19 18 22 22 C 1.38812 * 120.00191 * 143.70546 * 20 19 18 23 23 N 1.31606 * 120.00163 * 355.83218 * 22 20 19 24 24 Si 1.86807 * 119.99596 * 175.82502 * 22 20 19 25 25 H 1.48503 * 109.46873 * 90.00589 * 24 22 20 26 26 H 1.48500 * 109.46720 * 210.00088 * 24 22 20 27 27 H 1.48490 * 109.47427 * 330.00166 * 24 22 20 28 28 C 1.46923 * 118.74175 * 306.39123 * 19 18 17 29 29 C 1.53040 * 109.46220 * 306.37895 * 16 4 3 30 30 H 4.40639 * 5.51351 * 180.02562 * 4 1 2 31 31 H 1.08996 * 109.47287 * 318.25697 * 3 2 1 32 32 H 1.08998 * 109.46795 * 198.25225 * 3 2 1 33 33 H 1.09006 * 109.47021 * 303.26417 * 9 7 5 34 34 H 1.09001 * 109.46935 * 63.26238 * 9 7 5 35 35 H 1.08999 * 109.47225 * 183.26669 * 9 7 5 36 36 H 1.09006 * 109.47241 * 180.02562 * 12 10 7 37 37 H 1.09006 * 109.47530 * 300.00065 * 12 10 7 38 38 H 1.09007 * 109.47263 * 60.00164 * 12 10 7 39 39 H 1.09003 * 109.47016 * 304.99637 * 13 10 7 40 40 H 1.09002 * 109.47194 * 64.99691 * 13 10 7 41 41 H 1.09002 * 109.47071 * 180.02562 * 15 14 13 42 42 H 1.09007 * 109.47183 * 299.99745 * 15 14 13 43 43 H 1.08997 * 109.47848 * 59.99470 * 15 14 13 44 44 H 1.09000 * 109.45449 * 186.40883 * 16 4 3 45 45 H 1.08996 * 109.49971 * 298.56118 * 17 16 4 46 46 H 1.08999 * 109.50147 * 58.66380 * 17 16 4 47 47 H 1.09000 * 109.57997 * 294.85049 * 18 17 16 48 48 H 1.08996 * 109.70122 * 174.49333 * 18 17 16 49 49 H 0.97005 * 120.00483 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.58924 * 293.82753 * 28 19 18 51 51 H 1.09001 * 109.70563 * 173.46631 * 28 19 18 52 52 H 1.09000 * 109.49727 * 301.33928 * 29 16 4 53 53 H 1.09003 * 109.49888 * 61.43683 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2803 -1.3524 5 6 3.2584 0.7213 -2.2457 6 8 2.9094 1.8444 -1.9498 7 6 3.8366 0.4466 -3.6100 8 1 3.2896 -0.3714 -4.0785 9 6 5.3107 0.0609 -3.4710 10 6 3.7175 1.7020 -4.4765 11 1 4.2646 2.5201 -4.0079 12 6 2.2435 2.0878 -4.6154 13 6 4.3040 1.4231 -5.8618 14 8 4.2992 2.6266 -6.6322 15 6 4.8290 2.4748 -7.9506 16 6 3.4880 -1.6499 -1.7336 17 6 2.2276 -2.5178 -1.7437 18 6 2.5956 -3.9407 -2.1762 19 7 3.6648 -4.4394 -1.3005 20 6 3.5267 -5.6309 -0.6398 21 1 2.5613 -5.9271 -0.2566 22 6 4.6273 -6.4579 -0.4625 23 7 5.7850 -6.1368 -0.9997 24 14 4.4651 -8.0266 0.5388 25 1 4.0794 -9.1473 -0.3559 26 1 5.7645 -8.3361 1.1878 27 1 3.4228 -7.8435 1.5804 28 6 4.8853 -3.6359 -1.1476 29 6 4.4916 -2.2165 -0.7267 30 1 -1.0499 0.0002 0.0000 31 1 3.0097 -0.7659 0.6842 32 1 3.0088 0.9768 0.3219 33 1 5.8464 0.8547 -2.9505 34 1 5.3917 -0.8656 -2.9024 35 1 5.7439 -0.0813 -4.4611 36 1 2.1586 2.9819 -5.2331 37 1 1.6964 1.2696 -5.0840 38 1 1.8252 2.2863 -3.6286 39 1 5.3273 1.0627 -5.7573 40 1 3.7020 0.6668 -6.3656 41 1 4.7908 3.4324 -8.4701 42 1 5.8632 2.1359 -7.8899 43 1 4.2377 1.7405 -8.4976 44 1 3.9341 -1.6463 -2.7281 45 1 1.7946 -2.5422 -0.7437 46 1 1.5040 -2.1005 -2.4439 47 1 2.9443 -3.9299 -3.2089 48 1 1.7226 -4.5878 -2.0919 49 1 6.5541 -6.7149 -0.8761 50 1 5.4206 -3.6003 -2.0964 51 1 5.5241 -4.0795 -0.3840 52 1 5.3794 -1.5846 -0.7030 53 1 4.0373 -2.2437 0.2638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278157805.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:47 Heat of formation + Delta-G solvation = -23.640955 kcal Electronic energy + Delta-G solvation = -31122.111162 eV Core-core repulsion = 27188.579806 eV Total energy + Delta-G solvation = -3933.531356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.74842 -39.46883 -38.86515 -36.92753 -36.34811 -34.51865 -33.66307 -31.72659 -31.64418 -31.22447 -28.62414 -28.11946 -26.94855 -26.27001 -25.11931 -23.80180 -23.71174 -21.90721 -20.90469 -20.08354 -19.12744 -18.57640 -18.41012 -17.45110 -16.98013 -16.84740 -16.62961 -16.36082 -15.98316 -15.63168 -15.35087 -15.14204 -14.97037 -14.73753 -14.68810 -14.55701 -14.30329 -14.11511 -13.84471 -13.55400 -13.19845 -13.16339 -13.08986 -12.85787 -12.65066 -12.59537 -12.48914 -12.36125 -12.07099 -11.99268 -11.89859 -11.84366 -11.83301 -11.59405 -11.51146 -11.42842 -11.33027 -11.03024 -10.62589 -10.53087 -10.42249 -9.77480 -8.51498 -7.85195 -5.39872 1.42139 1.48488 1.50202 1.58006 1.60569 1.92202 2.36129 2.52043 2.86207 3.32412 3.41505 3.52688 3.71585 3.78264 3.82293 3.91090 4.07321 4.09621 4.26670 4.28418 4.34563 4.42408 4.46019 4.50940 4.52212 4.54424 4.58264 4.67998 4.69009 4.80892 4.82554 4.88053 4.89331 4.90291 4.94458 5.00344 5.06086 5.09292 5.11154 5.18057 5.30096 5.34131 5.35335 5.40408 5.49087 5.59766 5.69125 5.82126 6.27702 6.37859 6.48340 6.68739 7.13669 7.21953 7.88585 8.42435 9.20215 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.003240 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.072189 B = 8639.514418 C =10063.862016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.227 4.227 3 C 0.219 3.781 4 N -0.596 5.596 5 C 0.522 3.478 6 O -0.565 6.565 7 C -0.100 4.100 8 H 0.108 0.892 9 C -0.155 4.155 10 C -0.063 4.063 11 H 0.068 0.932 12 C -0.145 4.145 13 C 0.064 3.936 14 O -0.413 6.413 15 C 0.025 3.975 16 C 0.146 3.854 17 C -0.126 4.126 18 C 0.147 3.853 19 N -0.609 5.609 20 C -0.265 4.265 21 H 0.058 0.942 22 C -0.037 4.037 23 N -0.928 5.928 24 Si 0.961 3.039 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.273 1.273 28 C 0.185 3.815 29 C -0.137 4.137 30 H 0.244 0.756 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.109 0.891 45 H 0.051 0.949 46 H 0.067 0.933 47 H 0.025 0.975 48 H 0.052 0.948 49 H 0.251 0.749 50 H 0.009 0.991 51 H 0.054 0.946 52 H 0.074 0.926 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 14.368 -8.263 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.228 4.228 3 C 0.097 3.903 4 N -0.326 5.326 5 C 0.312 3.688 6 O -0.444 6.444 7 C -0.121 4.121 8 H 0.126 0.874 9 C -0.212 4.212 10 C -0.082 4.082 11 H 0.087 0.913 12 C -0.202 4.202 13 C -0.012 4.012 14 O -0.333 6.333 15 C -0.071 4.071 16 C 0.044 3.956 17 C -0.166 4.166 18 C 0.021 3.979 19 N -0.333 5.333 20 C -0.396 4.396 21 H 0.075 0.925 22 C -0.234 4.234 23 N -0.573 5.573 24 Si 0.790 3.210 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.198 1.198 28 C 0.059 3.941 29 C -0.176 4.176 30 H 0.260 0.740 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.127 0.873 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.043 0.957 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.027 0.973 51 H 0.073 0.927 52 H 0.093 0.907 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.281 15.039 -8.026 17.360 hybrid contribution -0.075 -1.330 0.594 1.459 sum -3.355 13.709 -7.432 15.951 Atomic orbital electron populations 1.25643 0.96769 1.00560 0.97893 1.23881 0.95633 1.00932 1.02348 1.18296 0.83851 1.03299 0.84821 1.48208 1.64088 1.08342 1.11992 1.20963 0.77008 0.83810 0.87000 1.90633 1.50943 1.23351 1.79431 1.21283 0.99187 0.99871 0.91747 0.87442 1.22074 0.92390 1.02361 1.04347 1.20755 0.97567 0.96266 0.93583 0.91324 1.21835 0.95196 1.01351 1.01820 1.22697 1.00740 0.86880 0.90854 1.87835 1.84677 1.33766 1.27017 1.22912 0.98065 1.03286 0.82814 1.21356 0.95233 0.78975 1.00032 1.22220 0.96873 0.96047 1.01423 1.20982 0.91478 0.92812 0.92613 1.44198 1.16698 1.20763 1.51611 1.19352 0.95307 0.95575 1.29324 0.92468 1.25927 0.96636 1.00188 1.00628 1.70055 1.00851 1.38750 1.47682 0.85377 0.76724 0.80428 0.78495 1.21202 1.21916 1.19814 1.20520 0.88157 0.87381 0.98079 1.22426 0.98521 0.98021 0.98673 0.73985 0.87300 0.88377 0.91996 0.91175 0.89150 0.92496 0.92702 0.92854 0.91413 0.92186 0.88731 0.93149 0.93259 0.87300 0.93002 0.91427 0.95722 0.92977 0.93994 0.97267 0.92735 0.90742 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.80 19.25 74.32 1.43 -3.37 16 2 C -0.23 -6.49 12.56 31.13 0.39 -6.10 16 3 C 0.22 6.00 5.29 84.57 0.45 6.45 16 4 N -0.60 -16.29 2.36 -808.15 -1.91 -18.20 16 5 C 0.52 14.60 6.51 87.66 0.57 15.17 16 6 O -0.56 -18.99 13.64 -3.02 -0.04 -19.03 16 7 C -0.10 -2.21 1.46 -11.54 -0.02 -2.23 16 8 H 0.11 2.19 7.40 -2.39 -0.02 2.17 16 9 C -0.15 -3.03 8.53 71.98 0.61 -2.42 16 10 C -0.06 -1.41 1.84 -10.79 -0.02 -1.43 16 11 H 0.07 1.79 8.03 -2.39 -0.02 1.77 16 12 C -0.14 -3.53 8.77 71.98 0.63 -2.90 16 13 C 0.06 1.20 5.11 71.98 0.37 1.57 16 14 O -0.41 -8.68 10.24 -148.98 -1.53 -10.21 16 15 C 0.03 0.35 11.01 113.37 1.25 1.60 16 16 C 0.15 4.17 1.59 45.02 0.07 4.24 16 17 C -0.13 -3.92 5.05 30.67 0.16 -3.77 16 18 C 0.15 5.58 6.52 86.37 0.56 6.14 16 19 N -0.61 -28.21 2.97 -699.09 -2.08 -30.29 16 20 C -0.27 -13.86 9.54 84.03 0.80 -13.06 16 21 H 0.06 2.98 7.83 -2.91 -0.02 2.96 16 22 C -0.04 -1.99 5.16 84.86 0.44 -1.55 16 23 N -0.93 -51.67 11.07 21.65 0.24 -51.43 16 24 Si 0.96 43.14 29.56 68.60 2.03 45.17 16 25 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 26 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 C 0.18 7.96 5.21 86.36 0.45 8.41 16 29 C -0.14 -4.45 4.91 30.67 0.15 -4.30 16 30 H 0.24 4.13 7.80 -4.42 -0.03 4.10 16 31 H 0.11 2.86 6.13 -2.39 -0.01 2.84 16 32 H 0.10 2.65 7.63 -2.39 -0.02 2.63 16 33 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 1.51 5.18 -2.39 -0.01 1.50 16 35 H 0.09 1.41 6.16 -2.39 -0.01 1.40 16 36 H 0.06 1.38 7.82 -2.38 -0.02 1.36 16 37 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.05 1.56 5.76 -2.38 -0.01 1.54 16 39 H 0.07 1.08 6.11 -2.39 -0.01 1.06 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.11 2.88 4.19 -2.39 -0.01 2.87 16 45 H 0.05 1.77 7.32 -2.39 -0.02 1.75 16 46 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 49 H 0.25 13.60 8.31 -92.70 -0.77 12.83 16 50 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.05 2.74 6.29 -2.39 -0.02 2.73 16 52 H 0.07 2.16 7.93 -2.39 -0.02 2.14 16 53 H 0.05 1.89 6.52 -2.39 -0.02 1.87 16 Total: -1.00 -64.80 407.10 5.89 -58.91 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.88 Total: 22.63 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 8.29 Total: 2.45 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -3.74 Total: -99.92 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.57 Total: -29.24 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -64.80 5.89 -58.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278157805.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.266 kcal (2) G-P(sol) polarization free energy of solvation -64.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds