Wall clock time and date at job start Tue Mar 31 2020 19:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09000 * 109.47699 * 2 1 4 4 N 1.46501 * 109.47526 * 239.99300 * 2 1 3 5 5 C 1.36944 * 119.99452 * 85.00209 * 4 2 1 6 6 H 1.07998 * 119.99999 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99795 * 180.02562 * 5 4 2 8 8 N 1.31626 * 119.99699 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 119.99944 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47384 * 89.99721 * 9 7 5 11 11 H 1.48508 * 109.47160 * 209.99665 * 9 7 5 12 12 H 1.48497 * 109.47201 * 329.99629 * 9 7 5 13 13 C 1.53005 * 109.47047 * 119.99381 * 2 1 3 14 14 H 1.09008 * 110.88290 * 63.88297 * 13 2 1 15 15 C 1.55154 * 111.00679 * 187.80251 * 13 2 1 16 16 C 1.54336 * 103.02073 * 153.38093 * 15 13 2 17 17 N 1.47016 * 107.26501 * 338.14591 * 16 15 13 18 18 C 1.34776 * 125.64877 * 178.84808 * 17 16 15 19 19 O 1.21278 * 120.00218 * 179.69392 * 18 17 16 20 20 C 1.50701 * 120.00040 * 359.68605 * 18 17 16 21 21 C 1.53861 * 113.60349 * 179.97438 * 20 18 17 22 22 C 1.53326 * 86.93833 * 139.74615 * 21 20 18 23 23 C 1.53302 * 87.55634 * 334.82032 * 22 21 20 24 24 C 1.52836 * 113.60767 * 220.01873 * 22 21 20 25 25 C 1.53262 * 108.88002 * 282.22510 * 24 22 21 26 26 O 1.42891 * 109.33485 * 304.69504 * 25 24 22 27 27 C 1.42901 * 114.36154 * 62.98662 * 26 25 24 28 28 C 1.52824 * 113.61779 * 89.62329 * 22 21 20 29 29 C 1.47424 * 108.70501 * 358.58186 * 17 16 15 30 30 H 1.08997 * 109.47423 * 300.00151 * 1 2 3 31 31 H 1.09009 * 109.47035 * 60.00517 * 1 2 3 32 32 H 1.09007 * 109.47286 * 180.02562 * 1 2 3 33 33 H 0.96993 * 120.00541 * 265.00512 * 4 2 1 34 34 H 0.97001 * 119.99581 * 180.02562 * 8 7 5 35 35 H 1.08996 * 110.72585 * 271.94356 * 15 13 2 36 36 H 1.09006 * 110.71798 * 35.21987 * 15 13 2 37 37 H 1.08995 * 109.99254 * 218.66803 * 16 15 13 38 38 H 1.09006 * 109.77332 * 97.50202 * 16 15 13 39 39 H 1.09006 * 112.83609 * 48.84517 * 20 18 17 40 40 H 1.09000 * 113.63469 * 25.23249 * 21 20 18 41 41 H 1.08996 * 113.64039 * 254.25338 * 21 20 18 42 42 H 1.08999 * 113.63579 * 139.69058 * 23 22 21 43 43 H 1.08997 * 113.63937 * 270.66432 * 23 22 21 44 44 H 1.08994 * 109.56957 * 42.05123 * 24 22 21 45 45 H 1.09008 * 109.56327 * 162.41040 * 24 22 21 46 46 H 1.08999 * 109.49316 * 184.73607 * 25 24 22 47 47 H 1.08998 * 109.51537 * 64.66598 * 25 24 22 48 48 H 1.09001 * 109.49265 * 177.06187 * 27 26 25 49 49 H 1.09001 * 109.52140 * 56.98955 * 27 26 25 50 50 H 1.08992 * 109.57353 * 197.58598 * 28 22 21 51 51 H 1.09004 * 109.56974 * 317.82981 * 28 22 21 52 52 H 1.09000 * 110.36703 * 143.19266 * 29 17 16 53 53 H 1.09000 * 110.36619 * 265.40852 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8919 1.0402 -2.4243 7 6 2.6114 -0.6621 -3.5092 8 7 2.9245 -1.9393 -3.4499 9 14 2.7906 0.2698 -5.1181 10 1 4.1533 0.8540 -5.2027 11 1 2.5797 -0.6613 -6.2556 12 1 1.7813 1.3576 -5.1751 13 6 2.0399 -0.7211 1.2494 14 1 1.7467 -1.7710 1.2389 15 6 3.5782 -0.5739 1.3876 16 6 3.8049 -0.7057 2.9085 17 7 2.5330 -0.3786 3.5692 18 6 2.3103 -0.3986 4.8983 19 8 1.2179 -0.1035 5.3347 20 6 3.4187 -0.7880 5.8422 21 6 3.0043 -0.7605 7.3237 22 6 3.8211 -2.0473 7.4910 23 6 3.5920 -2.3089 5.9979 24 6 3.1579 -3.0790 8.4030 25 6 3.3666 -2.6582 9.8618 26 8 4.7634 -2.4879 10.1099 27 6 5.3763 -1.4503 9.3419 28 6 5.2853 -1.8005 7.8524 29 6 1.5432 -0.0187 2.5376 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6318 -1.1525 34 1 3.2479 -2.3966 -4.2419 35 1 4.0919 -1.3697 0.8483 36 1 3.9050 0.4049 1.0361 37 1 4.5799 -0.0106 3.2314 38 1 4.0964 -1.7278 3.1507 39 1 4.3511 -0.2607 5.6403 40 1 1.9345 -0.8983 7.4809 41 1 3.4086 0.0884 7.8749 42 1 4.4683 -2.7038 5.4840 43 1 2.6851 -2.8759 5.7877 44 1 2.0909 -3.1261 8.1856 45 1 3.6097 -4.0570 8.2368 46 1 2.9711 -3.4294 10.5229 47 1 2.8469 -1.7183 10.0476 48 1 6.4232 -1.3546 9.6298 49 1 4.8607 -0.5077 9.5262 50 1 5.8673 -2.7001 7.6527 51 1 5.6741 -0.9743 7.2570 52 1 0.5556 -0.3879 2.8142 53 1 1.5178 1.0618 2.3968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279038090.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:01 Heat of formation + Delta-G solvation = -80.561506 kcal Electronic energy + Delta-G solvation = -29905.811147 eV Core-core repulsion = 25969.811531 eV Total energy + Delta-G solvation = -3935.999616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.06787 -40.65372 -39.12972 -37.88864 -36.76844 -34.25455 -32.44688 -32.07657 -31.60968 -30.81133 -28.92146 -27.03030 -26.67265 -25.80736 -24.69485 -24.19925 -22.77525 -22.61959 -21.08103 -19.99673 -19.19439 -19.14345 -18.21446 -17.45444 -17.05225 -16.93027 -16.69571 -16.45891 -16.01479 -15.74031 -15.46725 -15.25684 -14.96025 -14.75199 -14.58579 -14.45725 -14.02077 -13.90106 -13.87103 -13.59084 -13.38590 -13.20322 -13.11224 -12.90037 -12.77981 -12.70706 -12.52536 -12.32143 -12.20534 -12.17819 -12.10992 -11.94820 -11.67478 -11.55982 -11.44442 -11.38101 -11.32493 -11.03316 -10.91669 -10.70207 -10.26994 -9.66192 -8.97458 -7.90871 -5.17858 1.49147 1.49607 1.57110 1.57735 1.98430 2.58257 3.01098 3.34822 3.39526 3.43369 3.51555 3.60140 3.67437 3.70528 3.84284 3.92895 4.11963 4.13656 4.22703 4.26616 4.32277 4.38445 4.39845 4.50041 4.51897 4.57246 4.60935 4.68596 4.72854 4.76326 4.77906 4.79107 4.83600 4.89226 4.92469 4.96937 4.98061 5.05013 5.08636 5.13070 5.17917 5.19850 5.22474 5.33652 5.37819 5.38109 5.50829 5.55222 5.59668 6.31404 6.32240 6.53979 7.12702 7.38344 8.14063 8.37858 9.32376 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.027167 B = 0.002031 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.422111 B =13782.397185 C =14258.786278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.047 0.953 4 N -0.730 5.730 5 C -0.231 4.231 6 H 0.073 0.927 7 C -0.075 4.075 8 N -0.968 5.968 9 Si 0.966 3.034 10 H -0.287 1.287 11 H -0.299 1.299 12 H -0.273 1.273 13 C -0.093 4.093 14 H 0.073 0.927 15 C -0.114 4.114 16 C 0.107 3.893 17 N -0.615 5.615 18 C 0.531 3.469 19 O -0.589 6.589 20 C -0.126 4.126 21 C -0.108 4.108 22 C -0.075 4.075 23 C -0.106 4.106 24 C -0.138 4.138 25 C 0.060 3.940 26 O -0.404 6.404 27 C 0.056 3.944 28 C -0.127 4.127 29 C 0.119 3.881 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.135 0.865 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.052 0.948 48 H 0.106 0.894 49 H 0.054 0.946 50 H 0.077 0.923 51 H 0.091 0.909 52 H 0.065 0.935 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.059 0.474 26.799 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.074 3.926 3 H 0.065 0.935 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.091 0.909 7 C -0.267 4.267 8 N -0.619 5.619 9 Si 0.796 3.204 10 H -0.214 1.214 11 H -0.226 1.226 12 H -0.198 1.198 13 C -0.112 4.112 14 H 0.091 0.909 15 C -0.152 4.152 16 C -0.015 4.015 17 N -0.348 5.348 18 C 0.321 3.679 19 O -0.469 6.469 20 C -0.146 4.146 21 C -0.145 4.145 22 C -0.075 4.075 23 C -0.144 4.144 24 C -0.175 4.175 25 C -0.016 4.016 26 O -0.323 6.323 27 C -0.020 4.020 28 C -0.165 4.165 29 C -0.005 4.005 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.153 0.847 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.119 0.881 47 H 0.070 0.930 48 H 0.124 0.876 49 H 0.073 0.927 50 H 0.096 0.904 51 H 0.110 0.890 52 H 0.084 0.916 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.579 0.675 27.118 27.695 hybrid contribution -0.437 0.125 -1.752 1.810 sum 5.142 0.800 25.366 25.894 Atomic orbital electron populations 1.22373 0.98368 1.00731 1.00530 1.20294 0.92241 0.94919 0.85142 0.93484 1.42514 1.78305 1.10253 1.05938 1.19551 1.34410 0.94030 0.88293 0.90909 1.25444 1.03349 0.96818 1.01088 1.69803 1.52829 1.10008 1.29236 0.85247 0.77818 0.77424 0.79928 1.21429 1.22628 1.19835 1.22424 0.96214 0.99609 0.93000 0.90866 1.22520 0.95138 1.03131 0.94438 1.22206 0.85314 1.02171 0.91850 1.48674 1.13991 1.66918 1.05210 1.20837 0.89662 0.76014 0.81338 1.90659 1.27768 1.51451 1.77060 1.22826 0.97636 0.99772 0.94396 1.22875 1.00357 0.98174 0.93142 1.21467 0.96030 0.95435 0.94554 1.22852 1.02786 0.92612 0.96155 1.22095 1.01015 0.99044 0.95385 1.22650 0.81799 1.01323 0.95838 1.87868 1.23281 1.56513 1.64668 1.22751 0.99107 0.89888 0.90270 1.21979 0.93796 1.03540 0.97167 1.22125 0.92556 0.99438 0.86337 0.91668 0.94446 0.94042 0.79488 0.94215 0.90491 0.91014 0.89074 0.89724 0.84732 0.90651 0.90154 0.88789 0.90915 0.90912 0.90841 0.88148 0.92975 0.87583 0.92743 0.90392 0.89034 0.91605 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.59 9.27 71.98 0.67 -4.92 16 2 C 0.18 6.73 2.43 44.99 0.11 6.84 16 3 H 0.05 1.76 8.02 -2.39 -0.02 1.74 16 4 N -0.73 -34.61 4.97 -322.94 -1.61 -36.21 16 5 C -0.23 -12.29 9.93 84.03 0.83 -11.46 16 6 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 7 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 8 N -0.97 -57.53 13.06 21.65 0.28 -57.25 16 9 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 10 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 C -0.09 -2.77 2.66 -9.40 -0.02 -2.80 16 14 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 15 C -0.11 -3.01 6.27 31.79 0.20 -2.81 16 16 C 0.11 2.09 6.45 86.73 0.56 2.64 16 17 N -0.62 -14.96 3.33 -811.79 -2.70 -17.66 16 18 C 0.53 13.42 7.38 87.66 0.65 14.07 16 19 O -0.59 -19.73 16.15 -3.02 -0.05 -19.78 16 20 C -0.13 -2.06 3.01 -10.96 -0.03 -2.09 16 21 C -0.11 -1.73 6.36 30.99 0.20 -1.53 16 22 C -0.07 -0.96 0.77 -52.09 -0.04 -1.00 16 23 C -0.11 -1.52 6.79 30.99 0.21 -1.31 16 24 C -0.14 -1.84 5.33 30.63 0.16 -1.68 16 25 C 0.06 0.80 6.78 72.07 0.49 1.29 16 26 O -0.40 -6.50 10.72 -148.98 -1.60 -8.10 16 27 C 0.06 0.63 6.78 72.07 0.49 1.12 16 28 C -0.13 -1.28 5.23 30.63 0.16 -1.12 16 29 C 0.12 3.27 5.27 86.85 0.46 3.72 16 30 H 0.06 1.90 7.23 -2.39 -0.02 1.89 16 31 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.37 19.08 7.80 -92.71 -0.72 18.36 16 34 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 1.99 7.99 -2.38 -0.02 1.97 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.13 1.57 7.59 -2.38 -0.02 1.56 16 40 H 0.07 1.57 7.31 -2.39 -0.02 1.55 16 41 H 0.08 1.12 7.63 -2.39 -0.02 1.10 16 42 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 43 H 0.07 1.28 8.05 -2.39 -0.02 1.26 16 44 H 0.07 1.02 8.04 -2.39 -0.02 1.00 16 45 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.05 0.67 8.12 -2.39 -0.02 0.65 16 48 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.05 0.57 7.67 -2.39 -0.02 0.55 16 50 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.09 0.67 7.35 -2.38 -0.02 0.65 16 52 H 0.07 1.95 7.94 -2.39 -0.02 1.93 16 53 H 0.07 1.90 8.04 -2.39 -0.02 1.88 16 Total: -1.00 -67.71 409.74 2.06 -65.65 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.15 Total: 30.79 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.55 Total: -4.74 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -4.02 Total: -111.13 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.65 Total: -27.87 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -67.71 2.06 -65.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279038090.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.910 kcal (2) G-P(sol) polarization free energy of solvation -67.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds