Wall clock time and date at job start Tue Mar 31 2020 19:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47298 * 2 1 4 4 N 1.46497 * 109.47022 * 239.99865 * 2 1 3 5 5 C 1.36942 * 119.99816 * 85.00020 * 4 2 1 6 6 H 1.07993 * 119.99865 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99570 * 180.02562 * 5 4 2 8 8 N 1.31626 * 119.99298 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00452 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46755 * 89.99888 * 9 7 5 11 11 H 1.48496 * 109.47202 * 210.00151 * 9 7 5 12 12 H 1.48503 * 109.47283 * 330.00302 * 9 7 5 13 13 C 1.52999 * 109.47061 * 119.99968 * 2 1 3 14 14 H 1.09006 * 110.88480 * 59.91791 * 13 2 1 15 15 C 1.55155 * 111.00565 * 296.03604 * 13 2 1 16 16 C 1.54325 * 102.94410 * 206.38436 * 15 13 2 17 17 N 1.47029 * 107.26664 * 22.19375 * 16 15 13 18 18 C 1.34783 * 125.64195 * 181.02521 * 17 16 15 19 19 O 1.21283 * 119.99394 * 180.02562 * 18 17 16 20 20 C 1.50692 * 120.00379 * 0.02562 * 18 17 16 21 21 C 1.53864 * 113.60168 * 180.02562 * 20 18 17 22 22 C 1.53329 * 86.94245 * 220.34202 * 21 20 18 23 23 C 1.53304 * 87.55049 * 25.17820 * 22 21 20 24 24 C 1.52827 * 113.60928 * 270.37625 * 22 21 20 25 25 C 1.53274 * 108.88408 * 282.22632 * 24 22 21 26 26 O 1.42886 * 109.32776 * 304.70150 * 25 24 22 27 27 C 1.42906 * 114.37257 * 62.98242 * 26 25 24 28 28 C 1.52827 * 113.61036 * 139.98117 * 22 21 20 29 29 C 1.47422 * 108.70587 * 1.28518 * 17 16 15 30 30 H 1.08999 * 109.46639 * 305.07551 * 1 2 3 31 31 H 1.08999 * 109.47032 * 65.07914 * 1 2 3 32 32 H 1.08999 * 109.47068 * 185.07636 * 1 2 3 33 33 H 0.97006 * 120.00418 * 265.00413 * 4 2 1 34 34 H 0.97001 * 119.99082 * 180.02562 * 8 7 5 35 35 H 1.09003 * 110.72109 * 88.02042 * 15 13 2 36 36 H 1.09002 * 110.71898 * 324.75137 * 15 13 2 37 37 H 1.08999 * 109.88333 * 262.77962 * 16 15 13 38 38 H 1.08996 * 110.01078 * 141.67737 * 16 15 13 39 39 H 1.09000 * 112.84142 * 311.15630 * 20 18 17 40 40 H 1.09002 * 113.63734 * 105.82863 * 21 20 18 41 41 H 1.09003 * 113.71588 * 334.86533 * 21 20 18 42 42 H 1.08994 * 113.63935 * 89.33795 * 23 22 21 43 43 H 1.09011 * 113.63220 * 220.30977 * 23 22 21 44 44 H 1.08998 * 109.57059 * 42.04599 * 24 22 21 45 45 H 1.09003 * 109.57135 * 162.41030 * 24 22 21 46 46 H 1.09009 * 109.49677 * 184.74741 * 25 24 22 47 47 H 1.08996 * 109.51990 * 64.67878 * 25 24 22 48 48 H 1.09000 * 109.49724 * 177.05761 * 27 26 25 49 49 H 1.08999 * 109.51375 * 56.98742 * 27 26 25 50 50 H 1.08994 * 109.57228 * 197.59051 * 28 22 21 51 51 H 1.09007 * 109.56319 * 317.95436 * 28 22 21 52 52 H 1.08997 * 110.36260 * 94.48467 * 29 17 16 53 53 H 1.08994 * 110.36469 * 216.80673 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3758 6 1 1.8927 1.0405 -2.4241 7 6 2.6113 -0.6621 -3.5093 8 7 2.7375 -0.0052 -4.6430 9 14 3.0556 -2.4745 -3.4254 10 1 1.8580 -3.2928 -3.7442 11 1 4.1305 -2.7666 -4.4074 12 1 3.5311 -2.8049 -2.0580 13 6 2.0400 -0.7212 1.2492 14 1 1.6883 -1.7527 1.2733 15 6 1.6260 0.0377 2.5376 16 6 2.7191 -0.3725 3.5468 17 7 3.8900 -0.8053 2.7700 18 6 5.0498 -1.2595 3.2849 19 8 5.9529 -1.5901 2.5459 20 6 5.2245 -1.3566 4.7785 21 6 6.6029 -1.8919 5.2040 22 6 5.8668 -2.6937 6.2839 23 6 4.6248 -2.6362 5.3870 24 6 5.7057 -1.9395 7.6032 25 6 7.0362 -1.9793 8.3631 26 8 7.4472 -3.3381 8.5261 27 6 7.7082 -4.0262 7.3011 28 6 6.4169 -4.1061 6.4792 29 6 3.5875 -0.6544 1.3351 30 1 -0.3632 0.5906 0.8410 31 1 -0.3633 0.4330 -0.9320 32 1 -0.3633 -1.0236 0.0909 33 1 2.2490 -1.6319 -1.1526 34 1 3.0601 -0.4628 -5.4351 35 1 0.6437 -0.2891 2.8789 36 1 1.6389 1.1149 2.3716 37 1 2.3614 -1.1942 4.1672 38 1 2.9847 0.4777 4.1750 39 1 4.9311 -0.4449 5.2989 40 1 7.2651 -1.1244 5.6048 41 1 7.0836 -2.5141 4.4491 42 1 4.5560 -3.4646 4.6820 43 1 3.6977 -2.4666 5.9348 44 1 5.4318 -0.9041 7.4008 45 1 4.9287 -2.4140 8.2026 46 1 6.9099 -1.5176 9.3424 47 1 7.7939 -1.4351 7.7995 48 1 8.0641 -5.0333 7.5183 49 1 8.4671 -3.4864 6.7348 50 1 5.6836 -4.7135 7.0096 51 1 6.6296 -4.5526 5.5078 52 1 3.9488 0.3071 0.9704 53 1 4.0342 -1.4693 0.7655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279038092.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:15 Heat of formation + Delta-G solvation = -79.561296 kcal Electronic energy + Delta-G solvation = -30159.549955 eV Core-core repulsion = 26223.593711 eV Total energy + Delta-G solvation = -3935.956244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.08501 -40.66286 -39.18090 -37.91915 -36.90297 -34.33914 -32.61719 -32.17169 -31.87801 -30.31200 -29.77198 -27.03281 -26.46814 -25.58868 -24.71591 -24.19414 -22.76118 -22.57794 -21.32076 -20.06616 -19.51855 -19.21207 -18.23382 -17.37910 -17.05931 -16.94489 -16.70825 -16.57522 -16.10988 -15.78754 -15.56063 -15.36385 -14.99290 -14.75342 -14.56990 -14.50865 -14.16176 -13.98069 -13.87703 -13.63533 -13.56265 -13.21644 -13.13320 -12.95678 -12.76028 -12.67476 -12.54587 -12.49244 -12.22152 -12.15182 -12.02716 -11.94770 -11.74174 -11.71567 -11.46090 -11.40297 -11.34179 -11.05098 -11.00788 -10.71719 -10.28497 -9.66895 -9.31573 -8.03822 -5.34934 1.32927 1.36161 1.42032 1.55745 1.98154 2.45248 2.99258 3.26619 3.32340 3.37179 3.48691 3.53046 3.65816 3.68472 3.76602 3.90192 4.00946 4.11607 4.15494 4.22996 4.33394 4.37783 4.42296 4.49046 4.51431 4.55371 4.60581 4.71430 4.72221 4.75706 4.77587 4.81812 4.83093 4.87194 4.89981 4.96567 4.98913 5.06064 5.07399 5.11041 5.13192 5.19024 5.23875 5.32091 5.35500 5.40539 5.50108 5.62292 5.78208 6.21315 6.30363 6.55435 7.07766 7.13091 7.85830 8.01871 9.18064 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018846 B = 0.002446 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.369226 B =11444.571579 C =12349.850911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.181 3.819 3 H 0.044 0.956 4 N -0.754 5.754 5 C -0.217 4.217 6 H 0.060 0.940 7 C -0.065 4.065 8 N -0.984 5.984 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.300 1.300 12 H -0.262 1.262 13 C -0.095 4.095 14 H 0.085 0.915 15 C -0.113 4.113 16 C 0.099 3.901 17 N -0.617 5.617 18 C 0.523 3.477 19 O -0.599 6.599 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.074 4.074 23 C -0.102 4.102 24 C -0.125 4.125 25 C 0.054 3.946 26 O -0.403 6.403 27 C 0.060 3.940 28 C -0.138 4.138 29 C 0.116 3.884 30 H 0.082 0.918 31 H 0.029 0.971 32 H 0.053 0.947 33 H 0.361 0.639 34 H 0.256 0.744 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.141 0.859 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.109 0.891 47 H 0.050 0.950 48 H 0.100 0.900 49 H 0.048 0.952 50 H 0.077 0.923 51 H 0.067 0.933 52 H 0.050 0.950 53 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 -4.227 34.008 34.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.074 3.926 3 H 0.063 0.937 4 N -0.397 5.397 5 C -0.349 4.349 6 H 0.078 0.922 7 C -0.256 4.256 8 N -0.636 5.636 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.227 1.227 12 H -0.188 1.188 13 C -0.115 4.115 14 H 0.103 0.897 15 C -0.151 4.151 16 C -0.023 4.023 17 N -0.349 5.349 18 C 0.314 3.686 19 O -0.480 6.480 20 C -0.141 4.141 21 C -0.152 4.152 22 C -0.074 4.074 23 C -0.139 4.139 24 C -0.162 4.162 25 C -0.022 4.022 26 O -0.322 6.322 27 C -0.016 4.016 28 C -0.176 4.176 29 C -0.007 4.007 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.194 0.806 34 H 0.065 0.935 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.159 0.841 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.102 0.898 46 H 0.127 0.873 47 H 0.069 0.931 48 H 0.118 0.882 49 H 0.066 0.934 50 H 0.096 0.904 51 H 0.086 0.914 52 H 0.069 0.931 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.689 -4.320 33.717 34.035 hybrid contribution 0.712 -0.853 -1.855 2.162 sum 2.400 -5.173 31.862 32.368 Atomic orbital electron populations 1.22251 0.96320 1.01669 1.01093 1.20415 0.93504 0.94779 0.83937 0.93745 1.42883 1.79997 1.09548 1.07317 1.19017 1.34287 0.94445 0.87112 0.92156 1.25401 1.02839 1.01906 0.95466 1.69870 1.55188 1.37404 1.01104 0.85514 0.77675 0.81772 0.77419 1.20116 1.22748 1.18766 1.22578 0.92213 1.00912 0.95800 0.89693 1.22720 0.99534 1.01109 0.91771 1.22367 0.84140 1.01228 0.94531 1.48742 1.15081 1.63569 1.07534 1.21077 0.80079 0.75434 0.92038 1.90688 1.42352 1.51724 1.63217 1.22824 1.00452 1.02129 0.88713 1.22906 0.95054 0.99705 0.97582 1.21475 0.96107 0.95384 0.94420 1.22838 0.98770 0.94725 0.97616 1.21976 0.98743 1.01545 0.93945 1.22779 0.95100 0.82568 1.01776 1.87865 1.88033 1.25766 1.30537 1.22637 0.95843 0.97755 0.85398 1.22093 0.98469 0.96320 1.00691 1.22071 0.96694 0.99939 0.81998 0.89892 0.95200 0.92828 0.80640 0.93541 0.86719 0.89671 0.88824 0.88863 0.84105 0.90328 0.91393 0.91284 0.87729 0.88781 0.89826 0.87331 0.93138 0.88166 0.93391 0.90389 0.91403 0.93132 0.94397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 9.23 71.98 0.66 -3.89 16 2 C 0.18 6.25 2.40 44.99 0.11 6.36 16 3 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 4 N -0.75 -34.69 4.68 -322.94 -1.51 -36.20 16 5 C -0.22 -12.39 10.41 84.03 0.87 -11.51 16 6 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 7 C -0.06 -3.91 5.50 84.86 0.47 -3.45 16 8 N -0.98 -64.39 13.97 21.65 0.30 -64.09 16 9 Si 0.95 47.66 27.73 68.60 1.90 49.56 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.30 -15.48 7.11 99.48 0.71 -14.77 16 12 H -0.26 -12.39 6.52 99.48 0.65 -11.74 16 13 C -0.10 -2.52 2.65 -9.33 -0.02 -2.55 16 14 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 15 C -0.11 -1.79 5.56 31.78 0.18 -1.62 16 16 C 0.10 1.41 6.45 86.73 0.56 1.97 16 17 N -0.62 -15.56 3.33 -811.36 -2.70 -18.26 16 18 C 0.52 14.52 7.37 87.65 0.65 15.17 16 19 O -0.60 -23.39 16.15 -3.04 -0.05 -23.44 16 20 C -0.12 -1.99 3.01 -10.96 -0.03 -2.02 16 21 C -0.11 -2.01 6.36 31.00 0.20 -1.81 16 22 C -0.07 -0.93 0.77 -52.09 -0.04 -0.97 16 23 C -0.10 -1.33 6.78 30.99 0.21 -1.12 16 24 C -0.12 -1.09 5.23 30.63 0.16 -0.93 16 25 C 0.05 0.58 6.78 72.07 0.49 1.07 16 26 O -0.40 -6.43 10.72 -148.98 -1.60 -8.03 16 27 C 0.06 0.84 6.78 72.07 0.49 1.33 16 28 C -0.14 -1.89 5.33 30.63 0.16 -1.72 16 29 C 0.12 3.80 6.15 86.93 0.53 4.33 16 30 H 0.08 1.78 7.60 -2.39 -0.02 1.76 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.36 16.47 5.66 -92.70 -0.52 15.95 16 34 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.32 8.04 -2.39 -0.02 1.30 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.14 1.47 7.60 -2.39 -0.02 1.45 16 40 H 0.08 1.23 7.63 -2.39 -0.02 1.21 16 41 H 0.07 1.62 7.31 -2.39 -0.02 1.60 16 42 H 0.07 1.19 8.05 -2.39 -0.02 1.17 16 43 H 0.10 0.82 8.09 -2.38 -0.02 0.80 16 44 H 0.09 0.52 7.35 -2.39 -0.02 0.50 16 45 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.05 0.55 7.68 -2.39 -0.02 0.53 16 48 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.05 0.69 8.12 -2.39 -0.02 0.67 16 50 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.07 1.04 8.04 -2.38 -0.02 1.02 16 52 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 53 H 0.04 1.51 8.03 -2.39 -0.02 1.49 16 Total: -1.00 -80.05 407.20 2.28 -77.77 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.29 Total: 24.03 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 5.64 Total: -1.35 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -3.91 Total: -118.55 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.65 Total: -31.46 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.90 Total: 49.56 kcal Total: -80.05 2.28 -77.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279038092.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.791 kcal (2) G-P(sol) polarization free energy of solvation -80.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds