Wall clock time and date at job start Tue Mar 31 2020 20:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 119.99931 * 2 1 4 4 C 1.53006 * 109.47049 * 124.99938 * 3 2 1 5 5 O 1.42907 * 109.46993 * 180.02562 * 4 3 2 6 6 C 1.42894 * 113.99832 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47301 * 329.99948 * 6 5 4 8 8 C 1.53001 * 109.47013 * 89.99850 * 6 5 4 9 9 C 1.50697 * 109.47240 * 209.99782 * 6 5 4 10 10 O 1.21290 * 120.00036 * 355.00265 * 9 6 5 11 11 N 1.34772 * 120.00476 * 174.99821 * 9 6 5 12 12 C 1.46499 * 120.00331 * 179.97438 * 11 9 6 13 13 C 1.53003 * 115.55073 * 180.02562 * 12 11 9 14 14 C 1.53036 * 109.45910 * 34.41963 * 13 12 11 15 15 C 1.53189 * 109.31589 * 178.61253 * 14 13 12 16 16 N 1.46927 * 108.77499 * 54.63666 * 15 14 13 17 17 C 1.36932 * 120.63177 * 126.41632 * 16 15 14 18 18 H 1.08004 * 120.00038 * 207.66728 * 17 16 15 19 19 C 1.38814 * 119.99982 * 27.66313 * 17 16 15 20 20 N 1.31612 * 120.00200 * 17.37133 * 19 17 16 21 21 Si 1.86798 * 119.99944 * 197.36766 * 19 17 16 22 22 H 1.48503 * 109.47280 * 59.99851 * 21 19 17 23 23 H 1.48501 * 109.47190 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47276 * 300.00228 * 21 19 17 25 25 C 1.46931 * 118.73618 * 306.39418 * 16 15 14 26 26 C 1.53039 * 109.46243 * 274.35322 * 13 12 11 27 27 C 1.52996 * 117.50349 * 325.67626 * 12 11 9 28 28 C 1.52999 * 117.49657 * 34.33988 * 12 11 9 29 29 H 1.07997 * 119.99952 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00034 * 179.97438 * 1 2 3 31 31 H 1.08005 * 120.00355 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47297 * 5.00083 * 3 2 1 33 33 H 1.08999 * 109.47403 * 244.99903 * 3 2 1 34 34 H 1.08999 * 109.47019 * 60.00479 * 4 3 2 35 35 H 1.08992 * 109.47149 * 299.99844 * 4 3 2 36 36 H 1.09004 * 109.46912 * 179.97438 * 8 6 5 37 37 H 1.08994 * 109.47412 * 299.99721 * 8 6 5 38 38 H 1.09006 * 109.47031 * 60.00192 * 8 6 5 39 39 H 0.97000 * 119.99837 * 0.02562 * 11 9 6 40 40 H 1.09001 * 109.44702 * 154.38562 * 13 12 11 41 41 H 1.09004 * 109.50401 * 298.56806 * 14 13 12 42 42 H 1.09006 * 109.49890 * 58.66605 * 14 13 12 43 43 H 1.08996 * 109.59205 * 174.42339 * 15 14 13 44 44 H 1.09002 * 109.58857 * 294.85472 * 15 14 13 45 45 H 0.96996 * 120.00390 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.58954 * 293.81785 * 25 16 15 47 47 H 1.08999 * 109.58319 * 173.39833 * 25 16 15 48 48 H 1.08998 * 109.49975 * 301.34028 * 26 13 12 49 49 H 1.09001 * 109.49731 * 61.39982 * 26 13 12 50 50 H 1.09000 * 117.50041 * 215.00243 * 27 12 11 51 51 H 1.09002 * 117.49448 * 0.02562 * 27 12 11 52 52 H 1.09000 * 117.50000 * 359.97060 * 28 12 11 53 53 H 1.08996 * 117.50158 * 144.97575 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7491 2.5710 1.1820 6 6 4.6877 2.7002 2.2517 7 1 4.3351 2.1354 3.1147 8 6 6.0465 2.1559 1.8065 9 6 4.8266 4.1535 2.6253 10 8 4.2556 5.0039 1.9758 11 7 5.5854 4.5084 3.6811 12 6 5.7209 5.9213 4.0439 13 6 6.6061 6.2088 5.2582 14 6 7.7582 5.2023 5.2991 15 6 8.6616 5.5145 6.4962 16 7 7.8403 5.5413 7.7142 17 6 8.1738 4.7732 8.7977 18 1 7.4057 4.4378 9.4789 19 6 9.4991 4.4255 9.0204 20 7 10.4636 5.0894 8.4194 21 14 9.9136 3.0154 10.1732 22 1 9.2946 1.7639 9.6673 23 1 11.3876 2.8473 10.2398 24 1 9.3882 3.3141 11.5297 25 6 6.6545 6.4083 7.7477 26 6 5.7737 6.0860 6.5365 27 6 5.7276 6.9452 2.9070 28 6 4.5074 6.8267 3.8237 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4027 -0.9313 34 1 3.7400 0.5066 1.0921 35 1 2.4772 1.2356 2.1130 36 1 6.7625 2.2549 2.6223 37 1 5.9460 1.1047 1.5363 38 1 6.3991 2.7208 0.9435 39 1 6.0423 3.8284 4.2003 40 1 7.0089 7.2189 5.1828 41 1 7.3569 4.1937 5.3994 42 1 8.3369 5.2741 4.3782 43 1 9.4262 4.7431 6.5881 44 1 9.1349 6.4859 6.3533 45 1 11.3896 4.8467 8.5753 46 1 6.9641 7.4526 7.7068 47 1 6.0949 6.2267 8.6653 48 1 4.9398 6.7868 6.4964 49 1 5.3905 5.0694 6.6249 50 1 6.3623 7.8235 3.0244 51 1 5.6306 6.5675 1.8891 52 1 3.6083 6.3712 3.4086 53 1 4.3392 7.6269 4.5444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284844231.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:13 Heat of formation + Delta-G solvation = -19.592865 kcal Electronic energy + Delta-G solvation = -30016.412217 eV Core-core repulsion = 26083.056400 eV Total energy + Delta-G solvation = -3933.355817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.59303 -38.77936 -37.62348 -35.95994 -35.33232 -33.39975 -32.76885 -31.27390 -30.44575 -29.65389 -29.25800 -25.65551 -24.81706 -23.31823 -22.77661 -22.52734 -21.67882 -20.84141 -20.11961 -19.79333 -18.86073 -17.65079 -17.06800 -16.75563 -16.29158 -15.40576 -15.34806 -15.08933 -14.84584 -14.45887 -14.08110 -13.80243 -13.68651 -13.63896 -13.52134 -13.36293 -13.03606 -12.96364 -12.69988 -12.60239 -12.31101 -12.08406 -11.87277 -11.51269 -11.49489 -11.32092 -11.20055 -11.09785 -10.93699 -10.73919 -10.72986 -10.39516 -10.27589 -10.13908 -10.06919 -9.90467 -9.76989 -9.59611 -9.46135 -9.25215 -8.51574 -8.40344 -6.69713 -5.81485 -3.23262 1.83743 2.54634 2.73591 3.35370 3.41673 3.42294 3.66559 4.12319 4.45620 4.47097 4.56565 4.65311 4.69674 4.75315 4.86349 4.90982 4.98024 5.07719 5.11143 5.23120 5.32903 5.34365 5.40693 5.43658 5.48723 5.58394 5.61385 5.69274 5.69395 5.76536 5.85912 5.92184 5.98975 6.09096 6.19991 6.22330 6.29857 6.34951 6.49809 6.50537 6.54902 6.56765 6.71865 6.72895 6.80704 6.84759 6.98779 7.31738 7.56111 7.62176 7.76696 8.24275 8.42496 9.19025 9.82691 10.39557 11.26971 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013142 B = 0.002527 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.984423 B =11076.908840 C =12295.104080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C -0.092 4.092 4 C 0.064 3.936 5 O -0.357 6.357 6 C 0.072 3.928 7 H 0.085 0.915 8 C -0.171 4.171 9 C 0.513 3.487 10 O -0.518 6.518 11 N -0.686 5.686 12 C 0.110 3.890 13 C -0.042 4.042 14 C -0.133 4.133 15 C 0.171 3.829 16 N -0.592 5.592 17 C -0.252 4.252 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.144 3.856 26 C -0.124 4.124 27 C -0.179 4.179 28 C -0.177 4.177 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.407 0.593 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.018 0.982 45 H 0.254 0.746 46 H 0.017 0.983 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.091 0.909 51 H 0.104 0.896 52 H 0.104 0.896 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.500 -6.992 -14.978 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.275 6.275 6 C 0.010 3.990 7 H 0.103 0.897 8 C -0.229 4.229 9 C 0.298 3.702 10 O -0.394 6.394 11 N -0.339 5.339 12 C 0.023 3.977 13 C -0.061 4.061 14 C -0.173 4.173 15 C 0.045 3.955 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.018 3.982 26 C -0.164 4.164 27 C -0.218 4.218 28 C -0.216 4.216 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.244 0.756 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.110 0.890 51 H 0.123 0.877 52 H 0.122 0.878 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.753 -6.280 -15.547 21.686 hybrid contribution 0.532 -1.349 0.992 1.757 sum -13.221 -7.629 -14.555 21.091 Atomic orbital electron populations 1.23919 0.95912 1.02102 1.00484 1.22807 0.96037 0.97978 1.00462 1.20635 0.97952 0.95931 0.98439 1.22543 0.93865 0.86319 0.98580 1.88018 1.54330 1.37319 1.47861 1.21884 0.91447 0.94127 0.91519 0.89689 1.22242 0.95365 1.01960 1.03319 1.20324 0.79095 0.90387 0.80423 1.90668 1.45744 1.51313 1.51659 1.45365 1.49847 1.08011 1.30661 1.20933 1.01067 0.78268 0.97401 1.20780 0.94284 1.00418 0.90611 1.22210 0.97048 0.97566 1.00457 1.20775 0.92023 1.00223 0.82483 1.44057 1.27280 1.47981 1.12163 1.19139 0.91183 1.24085 1.03765 0.91781 1.25028 0.95930 0.99654 0.99075 1.70017 0.98886 1.39506 1.46306 0.86387 0.76978 0.82700 0.80800 1.21101 1.21665 1.20915 1.20918 0.88983 0.93269 0.95060 1.22054 0.97662 1.01112 0.95526 1.23438 1.01066 1.00100 0.97150 1.23350 0.94021 1.01780 1.02417 0.88369 0.88286 0.87162 0.90464 0.90006 0.92981 0.93056 0.90584 0.91245 0.91018 0.75618 0.90287 0.93065 0.92969 0.89362 0.96348 0.93584 0.96498 0.92824 0.92914 0.92468 0.89035 0.87746 0.87776 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.21 14.32 29.02 0.42 -0.79 16 2 C -0.15 -1.06 9.52 -36.02 -0.34 -1.40 16 3 C -0.09 -0.75 6.03 -27.88 -0.17 -0.92 16 4 C 0.06 0.56 5.73 37.16 0.21 0.78 16 5 O -0.36 -4.34 9.53 -55.09 -0.52 -4.87 16 6 C 0.07 0.78 3.13 -27.88 -0.09 0.70 16 7 H 0.09 0.77 7.79 -51.93 -0.40 0.36 16 8 C -0.17 -1.56 9.48 37.16 0.35 -1.21 16 9 C 0.51 7.09 6.88 -10.99 -0.08 7.02 16 10 O -0.52 -8.83 11.99 -14.31 -0.17 -9.00 16 11 N -0.69 -9.10 5.35 -47.61 -0.25 -9.36 16 12 C 0.11 1.59 2.48 -131.82 -0.33 1.27 16 13 C -0.04 -0.66 2.28 -90.58 -0.21 -0.87 16 14 C -0.13 -2.31 4.83 -26.61 -0.13 -2.44 16 15 C 0.17 3.85 5.31 -3.71 -0.02 3.83 16 16 N -0.59 -14.17 3.00 -172.32 -0.52 -14.68 16 17 C -0.25 -6.69 9.59 -15.06 -0.14 -6.83 16 18 H 0.06 1.68 7.89 -52.48 -0.41 1.26 16 19 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 20 N -0.90 -25.53 11.19 55.49 0.62 -24.91 16 21 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.14 2.90 6.52 -3.71 -0.02 2.88 16 26 C -0.12 -2.05 5.22 -26.61 -0.14 -2.19 16 27 C -0.18 -2.59 9.37 -26.69 -0.25 -2.84 16 28 C -0.18 -2.56 8.91 -26.69 -0.24 -2.79 16 29 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 30 H 0.10 0.52 8.06 -52.49 -0.42 0.09 16 31 H 0.11 0.63 8.06 -52.48 -0.42 0.20 16 32 H 0.08 0.69 7.79 -51.93 -0.40 0.28 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.38 7.87 -51.93 -0.41 -0.03 16 35 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.08 0.64 7.92 -51.93 -0.41 0.23 16 37 H 0.07 0.52 7.87 -51.93 -0.41 0.11 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.41 4.92 6.44 -40.82 -0.26 4.66 16 40 H 0.08 1.28 7.90 -51.93 -0.41 0.87 16 41 H 0.05 0.86 6.50 -51.93 -0.34 0.52 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 2.24 6.04 -51.93 -0.31 1.93 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 48 H 0.05 0.78 7.25 -51.93 -0.38 0.40 16 49 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 51 H 0.10 1.66 6.38 -51.93 -0.33 1.33 16 52 H 0.10 1.65 6.37 -51.93 -0.33 1.32 16 53 H 0.09 1.23 7.60 -51.93 -0.39 0.83 16 LS Contribution 413.23 15.07 6.23 6.23 Total: -1.00 -30.74 413.23 -10.29 -41.03 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -9.39 Total: 5.34 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.26 Total: -5.87 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.15 Total: -48.95 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.70 Total: -13.87 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.74 -10.29 -41.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284844231.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.441 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds