Wall clock time and date at job start Tue Mar 31 2020 20:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 119.99931 * 2 1 4 4 C 1.53006 * 109.47049 * 124.99938 * 3 2 1 5 5 O 1.42907 * 109.46993 * 180.02562 * 4 3 2 6 6 C 1.42894 * 113.99832 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47301 * 329.99948 * 6 5 4 8 8 C 1.53001 * 109.47013 * 89.99850 * 6 5 4 9 9 C 1.50697 * 109.47240 * 209.99782 * 6 5 4 10 10 O 1.21290 * 120.00036 * 355.00265 * 9 6 5 11 11 N 1.34772 * 120.00476 * 174.99821 * 9 6 5 12 12 C 1.46499 * 120.00331 * 179.97438 * 11 9 6 13 13 C 1.53003 * 115.55073 * 180.02562 * 12 11 9 14 14 C 1.53036 * 109.45910 * 34.41963 * 13 12 11 15 15 C 1.53189 * 109.31589 * 178.61253 * 14 13 12 16 16 N 1.46927 * 108.77499 * 54.63666 * 15 14 13 17 17 C 1.36932 * 120.63177 * 126.41632 * 16 15 14 18 18 H 1.08004 * 120.00038 * 207.66728 * 17 16 15 19 19 C 1.38814 * 119.99982 * 27.66313 * 17 16 15 20 20 N 1.31612 * 120.00200 * 17.37133 * 19 17 16 21 21 Si 1.86798 * 119.99944 * 197.36766 * 19 17 16 22 22 H 1.48503 * 109.47280 * 59.99851 * 21 19 17 23 23 H 1.48501 * 109.47190 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47276 * 300.00228 * 21 19 17 25 25 C 1.46931 * 118.73618 * 306.39418 * 16 15 14 26 26 C 1.53039 * 109.46243 * 274.35322 * 13 12 11 27 27 C 1.52996 * 117.50349 * 325.67626 * 12 11 9 28 28 C 1.52999 * 117.49657 * 34.33988 * 12 11 9 29 29 H 1.07997 * 119.99952 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00034 * 179.97438 * 1 2 3 31 31 H 1.08005 * 120.00355 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47297 * 5.00083 * 3 2 1 33 33 H 1.08999 * 109.47403 * 244.99903 * 3 2 1 34 34 H 1.08999 * 109.47019 * 60.00479 * 4 3 2 35 35 H 1.08992 * 109.47149 * 299.99844 * 4 3 2 36 36 H 1.09004 * 109.46912 * 179.97438 * 8 6 5 37 37 H 1.08994 * 109.47412 * 299.99721 * 8 6 5 38 38 H 1.09006 * 109.47031 * 60.00192 * 8 6 5 39 39 H 0.97000 * 119.99837 * 0.02562 * 11 9 6 40 40 H 1.09001 * 109.44702 * 154.38562 * 13 12 11 41 41 H 1.09004 * 109.50401 * 298.56806 * 14 13 12 42 42 H 1.09006 * 109.49890 * 58.66605 * 14 13 12 43 43 H 1.08996 * 109.59205 * 174.42339 * 15 14 13 44 44 H 1.09002 * 109.58857 * 294.85472 * 15 14 13 45 45 H 0.96996 * 120.00390 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.58954 * 293.81785 * 25 16 15 47 47 H 1.08999 * 109.58319 * 173.39833 * 25 16 15 48 48 H 1.08998 * 109.49975 * 301.34028 * 26 13 12 49 49 H 1.09001 * 109.49731 * 61.39982 * 26 13 12 50 50 H 1.09000 * 117.50041 * 215.00243 * 27 12 11 51 51 H 1.09002 * 117.49448 * 0.02562 * 27 12 11 52 52 H 1.09000 * 117.50000 * 359.97060 * 28 12 11 53 53 H 1.08996 * 117.50158 * 144.97575 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7491 2.5710 1.1820 6 6 4.6877 2.7002 2.2517 7 1 4.3351 2.1354 3.1147 8 6 6.0465 2.1559 1.8065 9 6 4.8266 4.1535 2.6253 10 8 4.2556 5.0039 1.9758 11 7 5.5854 4.5084 3.6811 12 6 5.7209 5.9213 4.0439 13 6 6.6061 6.2088 5.2582 14 6 7.7582 5.2023 5.2991 15 6 8.6616 5.5145 6.4962 16 7 7.8403 5.5413 7.7142 17 6 8.1738 4.7732 8.7977 18 1 7.4057 4.4378 9.4789 19 6 9.4991 4.4255 9.0204 20 7 10.4636 5.0894 8.4194 21 14 9.9136 3.0154 10.1732 22 1 9.2946 1.7639 9.6673 23 1 11.3876 2.8473 10.2398 24 1 9.3882 3.3141 11.5297 25 6 6.6545 6.4083 7.7477 26 6 5.7737 6.0860 6.5365 27 6 5.7276 6.9452 2.9070 28 6 4.5074 6.8267 3.8237 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4027 -0.9313 34 1 3.7400 0.5066 1.0921 35 1 2.4772 1.2356 2.1130 36 1 6.7625 2.2549 2.6223 37 1 5.9460 1.1047 1.5363 38 1 6.3991 2.7208 0.9435 39 1 6.0423 3.8284 4.2003 40 1 7.0089 7.2189 5.1828 41 1 7.3569 4.1937 5.3994 42 1 8.3369 5.2741 4.3782 43 1 9.4262 4.7431 6.5881 44 1 9.1349 6.4859 6.3533 45 1 11.3896 4.8467 8.5753 46 1 6.9641 7.4526 7.7068 47 1 6.0949 6.2267 8.6653 48 1 4.9398 6.7868 6.4964 49 1 5.3905 5.0694 6.6249 50 1 6.3623 7.8235 3.0244 51 1 5.6306 6.5675 1.8891 52 1 3.6083 6.3712 3.4086 53 1 4.3392 7.6269 4.5444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284844231.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:12 Heat of formation + Delta-G solvation = -35.845482 kcal Electronic energy + Delta-G solvation = -30017.116983 eV Core-core repulsion = 26083.056400 eV Total energy + Delta-G solvation = -3934.060584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.70368 -39.83955 -38.82232 -37.32096 -35.99585 -34.55734 -34.42250 -32.24836 -31.98063 -31.31507 -29.90506 -27.39952 -25.76339 -24.43812 -24.00484 -23.85378 -22.98443 -21.94625 -21.19791 -20.68185 -20.21981 -18.82309 -18.52505 -17.83144 -16.99201 -16.81764 -16.46550 -16.30074 -15.94428 -15.64419 -15.31733 -15.24108 -14.98004 -14.79300 -14.55655 -14.50086 -14.40867 -14.24859 -13.89874 -13.61235 -13.30504 -13.11979 -12.93070 -12.81556 -12.59679 -12.56928 -12.50569 -12.35538 -12.15315 -12.03334 -11.99161 -11.95322 -11.86523 -11.76022 -11.48000 -11.11760 -10.96776 -10.82499 -10.49038 -10.37575 -10.26555 -9.57522 -8.64133 -7.83895 -5.28168 1.32037 1.49615 1.49925 1.50926 1.58070 1.79783 2.54297 2.84253 2.96126 3.29837 3.50982 3.60510 3.75210 3.85076 3.92206 3.98198 4.00830 4.02840 4.14367 4.22147 4.26328 4.36004 4.42728 4.45329 4.50437 4.55117 4.65225 4.70475 4.76285 4.77249 4.82096 4.89014 4.96442 5.01782 5.03786 5.04785 5.09563 5.16848 5.20217 5.25974 5.28532 5.36385 5.40550 5.55137 5.61663 5.68960 5.71684 5.80956 5.84407 6.07601 6.42815 6.53504 7.19146 7.19644 7.91067 8.42330 9.22075 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013142 B = 0.002527 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.984423 B =11076.908840 C =12295.104080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.160 4.160 3 C -0.091 4.091 4 C 0.060 3.940 5 O -0.385 6.385 6 C 0.074 3.926 7 H 0.108 0.892 8 C -0.166 4.166 9 C 0.509 3.491 10 O -0.554 6.554 11 N -0.681 5.681 12 C 0.113 3.887 13 C -0.032 4.032 14 C -0.118 4.118 15 C 0.177 3.823 16 N -0.609 5.609 17 C -0.260 4.260 18 H 0.065 0.935 19 C -0.050 4.050 20 N -0.935 5.935 21 Si 0.964 3.036 22 H -0.276 1.276 23 H -0.297 1.297 24 H -0.279 1.279 25 C 0.140 3.860 26 C -0.111 4.111 27 C -0.178 4.178 28 C -0.172 4.172 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.413 0.587 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.056 0.944 44 H -0.006 1.006 45 H 0.249 0.751 46 H 0.013 0.987 47 H 0.052 0.948 48 H 0.076 0.924 49 H 0.056 0.944 50 H 0.104 0.896 51 H 0.089 0.911 52 H 0.089 0.911 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.695 -8.525 -15.152 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.178 4.178 3 C -0.129 4.129 4 C -0.016 4.016 5 O -0.304 6.304 6 C 0.012 3.988 7 H 0.126 0.874 8 C -0.224 4.224 9 C 0.296 3.704 10 O -0.432 6.432 11 N -0.334 5.334 12 C 0.026 3.974 13 C -0.051 4.051 14 C -0.157 4.157 15 C 0.051 3.949 16 N -0.332 5.332 17 C -0.390 4.390 18 H 0.083 0.917 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.792 3.208 22 H -0.202 1.202 23 H -0.223 1.223 24 H -0.205 1.205 25 C 0.014 3.986 26 C -0.150 4.150 27 C -0.216 4.216 28 C -0.210 4.210 29 H 0.113 0.887 30 H 0.132 0.868 31 H 0.143 0.857 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.252 0.748 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.012 0.988 45 H 0.058 0.942 46 H 0.031 0.969 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.075 0.925 50 H 0.122 0.878 51 H 0.107 0.893 52 H 0.108 0.892 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.974 -7.825 -15.719 23.077 hybrid contribution 0.855 -0.807 1.049 1.575 sum -14.120 -8.632 -14.671 22.116 Atomic orbital electron populations 1.24082 0.95988 1.02690 0.99856 1.22847 0.96168 0.97784 1.00987 1.20618 0.97688 0.96329 0.98228 1.22712 0.94208 0.85723 0.98929 1.87990 1.54901 1.39091 1.48379 1.21952 0.92388 0.92153 0.92260 0.87424 1.22228 0.94320 1.02814 1.03020 1.20908 0.78194 0.91532 0.79777 1.90654 1.47179 1.52636 1.52762 1.45319 1.49758 1.07647 1.30664 1.20722 1.00899 0.79082 0.96737 1.20624 0.93695 0.99818 0.90975 1.21981 0.96798 0.98517 0.98412 1.20590 0.92310 0.97804 0.84209 1.44316 1.28248 1.48586 1.12067 1.19458 0.91290 1.24007 1.04232 0.91685 1.25746 0.95911 1.01920 1.01005 1.70173 0.98809 1.41015 1.48078 0.85396 0.76156 0.80136 0.79072 1.20159 1.22313 1.20478 1.21064 0.88196 0.92392 0.96922 1.21891 0.97502 1.01683 0.93877 1.23407 1.01444 1.00468 0.96307 1.23314 0.93281 1.01901 1.02481 0.88733 0.86849 0.85690 0.91875 0.90320 0.91030 0.92642 0.89716 0.89223 0.92418 0.74817 0.90399 0.92137 0.91588 0.92584 0.98801 0.94189 0.96928 0.92916 0.90516 0.92496 0.87797 0.89280 0.89223 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.18 14.32 67.79 0.97 -1.21 16 2 C -0.16 -1.94 9.52 25.65 0.24 -1.69 16 3 C -0.09 -1.41 6.03 29.85 0.18 -1.23 16 4 C 0.06 0.97 5.73 71.98 0.41 1.38 16 5 O -0.38 -8.93 9.53 -129.99 -1.24 -10.16 16 6 C 0.07 1.47 3.13 29.85 0.09 1.57 16 7 H 0.11 1.65 7.79 -2.39 -0.02 1.63 16 8 C -0.17 -2.67 9.48 71.98 0.68 -1.99 16 9 C 0.51 13.46 6.88 87.66 0.60 14.06 16 10 O -0.55 -18.69 11.99 15.93 0.19 -18.50 16 11 N -0.68 -16.78 5.35 -422.93 -2.26 -19.04 16 12 C 0.11 3.04 2.48 3.60 0.01 3.05 16 13 C -0.03 -0.95 2.28 -10.77 -0.02 -0.97 16 14 C -0.12 -3.93 4.83 30.67 0.15 -3.79 16 15 C 0.18 8.02 5.31 86.36 0.46 8.48 16 16 N -0.61 -29.07 3.00 -699.10 -2.09 -31.17 16 17 C -0.26 -13.76 9.59 84.03 0.81 -12.96 16 18 H 0.07 3.37 7.89 -2.91 -0.02 3.34 16 19 C -0.05 -2.74 4.91 84.86 0.42 -2.32 16 20 N -0.93 -53.94 11.19 21.65 0.24 -53.70 16 21 Si 0.96 43.51 29.59 68.60 2.03 45.54 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 C 0.14 5.49 6.52 86.36 0.56 6.05 16 26 C -0.11 -3.41 5.22 30.67 0.16 -3.25 16 27 C -0.18 -4.90 9.37 30.62 0.29 -4.61 16 28 C -0.17 -4.63 8.91 30.62 0.27 -4.36 16 29 H 0.09 1.13 7.84 -2.91 -0.02 1.11 16 30 H 0.11 0.96 8.06 -2.91 -0.02 0.94 16 31 H 0.13 1.13 8.06 -2.91 -0.02 1.11 16 32 H 0.06 1.13 7.79 -2.39 -0.02 1.11 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 0.86 7.87 -2.39 -0.02 0.84 16 35 H 0.06 0.83 8.08 -2.39 -0.02 0.81 16 36 H 0.08 1.20 7.92 -2.39 -0.02 1.19 16 37 H 0.09 1.08 7.87 -2.39 -0.02 1.06 16 38 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.41 9.00 6.44 -92.71 -0.60 8.41 16 40 H 0.08 2.38 7.90 -2.39 -0.02 2.36 16 41 H 0.06 1.91 6.50 -2.38 -0.02 1.90 16 42 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.06 2.91 6.04 -2.39 -0.01 2.89 16 44 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 45 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 46 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 48 H 0.08 2.03 7.25 -2.39 -0.02 2.02 16 49 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.10 2.58 8.05 -2.39 -0.02 2.56 16 51 H 0.09 2.79 6.38 -2.39 -0.02 2.77 16 52 H 0.09 2.75 6.37 -2.39 -0.02 2.74 16 53 H 0.11 2.56 7.60 -2.39 -0.02 2.54 16 Total: -1.00 -67.09 413.23 3.43 -63.67 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.28 Total: 27.15 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 6.28 Total: -3.78 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -4.11 Total: -103.90 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -1.05 Total: -28.67 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.09 3.43 -63.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284844231.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.820 kcal (2) G-P(sol) polarization free energy of solvation -67.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds