Wall clock time and date at job start Tue Mar 31 2020 20:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 120.00220 * 2 1 4 4 C 1.53001 * 109.47026 * 124.99701 * 3 2 1 5 5 O 1.42895 * 109.47281 * 179.97438 * 4 3 2 6 6 C 1.42897 * 114.00414 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47065 * 30.00046 * 6 5 4 8 8 C 1.53005 * 109.46952 * 270.00244 * 6 5 4 9 9 C 1.50696 * 109.47253 * 150.00050 * 6 5 4 10 10 O 1.21277 * 120.00371 * 9.20890 * 9 6 5 11 11 N 1.34780 * 120.00227 * 189.20730 * 9 6 5 12 12 C 1.47484 * 125.66759 * 184.81295 * 11 9 6 13 13 C 1.55009 * 104.99626 * 204.06967 * 12 11 9 14 14 C 1.54543 * 101.52471 * 323.55499 * 13 12 11 15 15 C 1.47450 * 125.80131 * 4.83118 * 11 9 6 16 16 C 1.52277 * 110.16221 * 276.40566 * 14 13 12 17 17 C 1.53310 * 109.41802 * 297.16826 * 16 14 13 18 18 N 1.46928 * 108.70798 * 306.48913 * 17 16 14 19 19 C 1.36941 * 120.56729 * 234.25539 * 18 17 16 20 20 H 1.08005 * 119.99332 * 27.69195 * 19 18 17 21 21 C 1.38804 * 120.00321 * 207.69640 * 19 18 17 22 22 N 1.31620 * 120.00126 * 15.04136 * 21 19 18 23 23 Si 1.86807 * 119.99983 * 195.04707 * 21 19 18 24 24 H 1.48498 * 109.46796 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46946 * 119.99683 * 23 21 19 26 26 H 1.48493 * 109.46729 * 239.99806 * 23 21 19 27 27 C 1.46934 * 118.87326 * 54.23503 * 18 17 16 28 28 C 1.52268 * 110.15654 * 153.28330 * 14 13 12 29 29 H 1.07988 * 120.00408 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.99298 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99984 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47074 * 4.99829 * 3 2 1 33 33 H 1.08998 * 109.46720 * 244.99520 * 3 2 1 34 34 H 1.09000 * 109.47089 * 60.00137 * 4 3 2 35 35 H 1.09003 * 109.47416 * 300.00234 * 4 3 2 36 36 H 1.09003 * 109.46903 * 186.35262 * 8 6 5 37 37 H 1.08995 * 109.47157 * 306.35121 * 8 6 5 38 38 H 1.08997 * 109.47131 * 66.35327 * 8 6 5 39 39 H 1.09005 * 110.35517 * 85.15330 * 12 11 9 40 40 H 1.09003 * 110.34938 * 322.98114 * 12 11 9 41 41 H 1.09000 * 111.01519 * 81.61599 * 13 12 11 42 42 H 1.09006 * 111.01347 * 205.49861 * 13 12 11 43 43 H 1.09001 * 109.87955 * 59.09674 * 15 11 9 44 44 H 1.08994 * 110.05618 * 297.94241 * 15 11 9 45 45 H 1.09002 * 109.48055 * 57.14818 * 16 14 13 46 46 H 1.08993 * 109.48140 * 177.18327 * 16 14 13 47 47 H 1.09003 * 109.60177 * 186.72706 * 17 16 14 48 48 H 1.08998 * 109.60103 * 66.25550 * 17 16 14 49 49 H 0.96996 * 120.00338 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.59919 * 185.99896 * 27 18 17 51 51 H 1.08995 * 109.73081 * 65.60046 * 27 18 17 52 52 H 1.08998 * 109.48086 * 182.80985 * 28 14 13 53 53 H 1.09002 * 109.48291 * 302.83138 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7500 2.5703 1.1814 6 6 4.6895 2.6990 2.2504 7 1 5.0658 1.7133 2.5240 8 6 4.0019 3.3362 3.4596 9 6 5.8372 3.5699 1.8084 10 8 5.7735 4.1691 0.7560 11 7 6.9345 3.6830 2.5828 12 6 8.0819 4.5726 2.3236 13 6 9.2722 3.9204 3.0723 14 6 8.5763 3.3681 4.3369 15 6 7.1905 2.9392 3.8300 16 6 8.4493 4.4636 5.3869 17 6 9.8475 4.9241 5.8148 18 7 10.6241 3.7483 6.2309 19 6 11.2206 3.7080 7.4629 20 1 10.8011 4.2697 8.2845 21 6 12.3642 2.9454 7.6558 22 7 13.0439 2.5045 6.6185 23 14 12.9385 2.5446 9.3876 24 1 12.0075 3.1538 10.3712 25 1 12.9609 1.0714 9.5732 26 1 14.3037 3.0906 9.5951 27 6 10.7496 2.6161 5.3028 28 6 9.3453 2.1706 4.8783 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1317 0.0895 33 1 2.6214 1.4025 -0.9314 34 1 3.7399 0.5065 1.0921 35 1 2.4772 1.2356 2.1131 36 1 4.7421 3.5379 4.2339 37 1 3.5281 4.2702 3.1578 38 1 3.2458 2.6544 3.8487 39 1 7.8857 5.5694 2.7188 40 1 8.2884 4.6233 1.2545 41 1 9.7100 3.1143 2.4835 42 1 10.0246 4.6645 3.3337 43 1 7.1835 1.8676 3.6305 44 1 6.4315 3.1832 4.5732 45 1 7.9013 5.3074 4.9674 46 1 7.9131 4.0764 6.2532 47 1 9.7638 5.6207 6.6490 48 1 10.3443 5.4123 4.9763 49 1 13.8429 1.9713 6.7533 50 1 11.2604 1.7912 5.7993 51 1 11.3173 2.9219 4.4240 52 1 8.8186 1.7595 5.7395 53 1 9.4244 1.4085 4.1030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323826403.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:49 Heat of formation + Delta-G solvation = -42.184105 kcal Electronic energy + Delta-G solvation = -30118.296942 eV Core-core repulsion = 26183.961495 eV Total energy + Delta-G solvation = -3934.335447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.57254 -39.09548 -37.80151 -35.84121 -35.40126 -33.18615 -32.08093 -30.87209 -30.05457 -29.53251 -29.03530 -27.00993 -24.98471 -24.00571 -23.37120 -22.50784 -22.09585 -20.99433 -20.26672 -19.39986 -18.14577 -17.38418 -16.90061 -16.53316 -16.26169 -15.85877 -15.39544 -15.14552 -14.90228 -14.59505 -14.01410 -13.97554 -13.73808 -13.60667 -13.50125 -13.17756 -13.04435 -12.77418 -12.73708 -12.64309 -12.43607 -12.24875 -12.11422 -11.52102 -11.50242 -11.44616 -11.41208 -11.27968 -11.09930 -10.81372 -10.69164 -10.50908 -10.32278 -10.15915 -10.11535 -9.86892 -9.76028 -9.66885 -9.56595 -9.36783 -8.61938 -8.48903 -6.69875 -5.81911 -3.25286 1.82843 2.57288 2.65172 3.33818 3.42170 3.43750 3.59999 4.32020 4.45947 4.54338 4.61525 4.66755 4.69588 4.77989 4.86814 4.88150 4.98827 5.04238 5.08332 5.26775 5.33942 5.34994 5.38749 5.42022 5.44504 5.55051 5.59814 5.63087 5.66163 5.69488 5.84500 5.90126 5.93927 6.02178 6.07621 6.21525 6.22340 6.23906 6.32682 6.34230 6.48022 6.58533 6.60216 6.69300 6.79286 6.84578 6.92983 7.33377 7.51263 7.65774 7.76098 8.15073 8.42189 9.18491 9.81522 10.37168 11.25922 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.002180 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.959478 B =12842.467424 C =13388.522462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.359 6.359 6 C 0.077 3.923 7 H 0.084 0.916 8 C -0.173 4.173 9 C 0.529 3.471 10 O -0.527 6.527 11 N -0.614 5.614 12 C 0.108 3.892 13 C -0.123 4.123 14 C -0.055 4.055 15 C 0.101 3.899 16 C -0.119 4.119 17 C 0.145 3.855 18 N -0.591 5.591 19 C -0.249 4.249 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.904 5.904 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.171 3.829 28 C -0.127 4.127 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.020 0.980 49 H 0.253 0.747 50 H 0.092 0.908 51 H 0.019 0.981 52 H 0.057 0.943 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.643 -3.459 -8.964 21.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.171 4.171 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.277 6.277 6 C 0.016 3.984 7 H 0.101 0.899 8 C -0.230 4.230 9 C 0.316 3.684 10 O -0.403 6.403 11 N -0.349 5.349 12 C -0.014 4.014 13 C -0.161 4.161 14 C -0.056 4.056 15 C -0.021 4.021 16 C -0.159 4.159 17 C 0.019 3.981 18 N -0.314 5.314 19 C -0.379 4.379 20 H 0.083 0.917 21 C -0.198 4.198 22 N -0.549 5.549 23 Si 0.732 3.268 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.045 3.955 28 C -0.166 4.166 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.038 0.962 49 H 0.063 0.937 50 H 0.110 0.890 51 H 0.038 0.962 52 H 0.076 0.924 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.635 -3.081 -9.712 22.121 hybrid contribution 0.373 -0.604 1.124 1.330 sum -19.262 -3.685 -8.588 21.409 Atomic orbital electron populations 1.23904 0.95871 1.02058 1.00696 1.22817 0.96027 0.98025 1.00270 1.20641 0.97882 0.95868 0.98615 1.22542 0.94125 0.86145 0.98479 1.88016 1.53723 1.37253 1.48721 1.21811 0.89172 0.99049 0.88385 0.89867 1.22280 1.01649 1.02359 0.96741 1.19960 0.82159 0.82606 0.83628 1.90703 1.80122 1.46951 1.22504 1.48588 1.18470 1.42779 1.25103 1.22318 0.84917 0.93300 1.00846 1.22896 0.96495 1.01152 0.95530 1.20965 0.92079 0.97449 0.95062 1.22455 0.98544 0.95867 0.85259 1.21930 1.00055 0.96623 0.97262 1.20952 0.89628 0.90303 0.97248 1.44051 1.59009 1.12626 1.15698 1.19243 1.04526 1.27597 0.86529 0.91676 1.25040 0.95668 1.02001 0.97050 1.70001 1.17352 1.39475 1.28089 0.86227 0.78293 0.77885 0.84395 1.20312 1.21610 1.21757 1.20840 0.90024 0.92156 0.92499 1.22127 1.00371 0.94788 0.99331 0.88290 0.88414 0.87134 0.90523 0.89891 0.93047 0.92972 0.90390 0.90999 0.91268 0.91446 0.90756 0.90814 0.88825 0.91513 0.91182 0.93020 0.92077 0.92825 0.96181 0.93687 0.88999 0.96241 0.92440 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.16 14.32 29.01 0.42 -0.74 16 2 C -0.15 -1.04 9.52 -36.02 -0.34 -1.39 16 3 C -0.09 -0.76 6.03 -27.88 -0.17 -0.93 16 4 C 0.06 0.57 5.73 37.16 0.21 0.79 16 5 O -0.36 -4.52 9.54 -54.97 -0.52 -5.04 16 6 C 0.08 0.89 2.53 -27.88 -0.07 0.81 16 7 H 0.08 0.80 7.61 -51.93 -0.40 0.40 16 8 C -0.17 -1.63 9.45 37.16 0.35 -1.28 16 9 C 0.53 7.79 7.18 -10.99 -0.08 7.71 16 10 O -0.53 -9.84 16.76 -14.18 -0.24 -10.08 16 11 N -0.61 -8.26 3.34 -170.47 -0.57 -8.83 16 12 C 0.11 1.47 6.60 -2.44 -0.02 1.45 16 13 C -0.12 -1.75 4.92 -24.86 -0.12 -1.87 16 14 C -0.05 -0.80 0.55 -154.09 -0.09 -0.88 16 15 C 0.10 1.24 5.32 -3.17 -0.02 1.22 16 16 C -0.12 -1.84 4.74 -26.94 -0.13 -1.97 16 17 C 0.15 2.78 6.19 -3.65 -0.02 2.76 16 18 N -0.59 -13.76 2.99 -172.16 -0.51 -14.28 16 19 C -0.25 -6.52 9.59 -15.06 -0.14 -6.67 16 20 H 0.07 1.69 7.87 -52.48 -0.41 1.27 16 21 C 0.00 0.02 4.97 -17.43 -0.09 -0.07 16 22 N -0.90 -25.29 11.02 55.49 0.61 -24.67 16 23 Si 0.90 21.06 29.58 -169.99 -5.03 16.03 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.17 3.74 5.03 -3.64 -0.02 3.72 16 28 C -0.13 -2.14 4.72 -26.94 -0.13 -2.26 16 29 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 30 H 0.10 0.57 7.84 -52.49 -0.41 0.15 16 31 H 0.11 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.08 0.63 7.79 -51.93 -0.40 0.23 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.05 0.40 8.03 -51.93 -0.42 -0.02 16 36 H 0.08 0.70 5.62 -51.93 -0.29 0.41 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.52 8.03 -51.93 -0.42 0.11 16 39 H 0.07 0.89 7.74 -51.93 -0.40 0.49 16 40 H 0.07 1.04 7.99 -51.93 -0.42 0.63 16 41 H 0.07 1.06 8.01 -51.93 -0.42 0.64 16 42 H 0.09 1.44 6.08 -51.93 -0.32 1.12 16 43 H 0.07 0.76 7.76 -51.93 -0.40 0.35 16 44 H 0.07 0.77 5.67 -51.93 -0.29 0.48 16 45 H 0.05 0.71 7.47 -51.93 -0.39 0.33 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 48 H 0.02 0.39 6.47 -51.93 -0.34 0.05 16 49 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 50 H 0.09 2.32 5.91 -51.93 -0.31 2.02 16 51 H 0.02 0.45 7.56 -51.93 -0.39 0.06 16 52 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 53 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 LS Contribution 406.51 15.07 6.13 6.13 Total: -1.00 -30.98 406.51 -9.93 -40.91 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -9.34 Total: -0.57 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -0.45 Total: 0.41 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.47 Total: -47.78 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.76 Total: -15.12 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.98 -9.93 -40.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323826403.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.274 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds