Wall clock time and date at job start Tue Mar 31 2020 20:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 120.00220 * 2 1 4 4 C 1.53001 * 109.47026 * 124.99701 * 3 2 1 5 5 O 1.42895 * 109.47281 * 179.97438 * 4 3 2 6 6 C 1.42897 * 114.00414 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47065 * 30.00046 * 6 5 4 8 8 C 1.53005 * 109.46952 * 270.00244 * 6 5 4 9 9 C 1.50696 * 109.47253 * 150.00050 * 6 5 4 10 10 O 1.21277 * 120.00371 * 9.20890 * 9 6 5 11 11 N 1.34780 * 120.00227 * 189.20730 * 9 6 5 12 12 C 1.47484 * 125.66759 * 184.81295 * 11 9 6 13 13 C 1.55009 * 104.99626 * 204.06967 * 12 11 9 14 14 C 1.54543 * 101.52471 * 323.55499 * 13 12 11 15 15 C 1.47450 * 125.80131 * 4.83118 * 11 9 6 16 16 C 1.52277 * 110.16221 * 276.40566 * 14 13 12 17 17 C 1.53310 * 109.41802 * 297.16826 * 16 14 13 18 18 N 1.46928 * 108.70798 * 306.48913 * 17 16 14 19 19 C 1.36941 * 120.56729 * 234.25539 * 18 17 16 20 20 H 1.08005 * 119.99332 * 27.69195 * 19 18 17 21 21 C 1.38804 * 120.00321 * 207.69640 * 19 18 17 22 22 N 1.31620 * 120.00126 * 15.04136 * 21 19 18 23 23 Si 1.86807 * 119.99983 * 195.04707 * 21 19 18 24 24 H 1.48498 * 109.46796 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46946 * 119.99683 * 23 21 19 26 26 H 1.48493 * 109.46729 * 239.99806 * 23 21 19 27 27 C 1.46934 * 118.87326 * 54.23503 * 18 17 16 28 28 C 1.52268 * 110.15654 * 153.28330 * 14 13 12 29 29 H 1.07988 * 120.00408 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.99298 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99984 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47074 * 4.99829 * 3 2 1 33 33 H 1.08998 * 109.46720 * 244.99520 * 3 2 1 34 34 H 1.09000 * 109.47089 * 60.00137 * 4 3 2 35 35 H 1.09003 * 109.47416 * 300.00234 * 4 3 2 36 36 H 1.09003 * 109.46903 * 186.35262 * 8 6 5 37 37 H 1.08995 * 109.47157 * 306.35121 * 8 6 5 38 38 H 1.08997 * 109.47131 * 66.35327 * 8 6 5 39 39 H 1.09005 * 110.35517 * 85.15330 * 12 11 9 40 40 H 1.09003 * 110.34938 * 322.98114 * 12 11 9 41 41 H 1.09000 * 111.01519 * 81.61599 * 13 12 11 42 42 H 1.09006 * 111.01347 * 205.49861 * 13 12 11 43 43 H 1.09001 * 109.87955 * 59.09674 * 15 11 9 44 44 H 1.08994 * 110.05618 * 297.94241 * 15 11 9 45 45 H 1.09002 * 109.48055 * 57.14818 * 16 14 13 46 46 H 1.08993 * 109.48140 * 177.18327 * 16 14 13 47 47 H 1.09003 * 109.60177 * 186.72706 * 17 16 14 48 48 H 1.08998 * 109.60103 * 66.25550 * 17 16 14 49 49 H 0.96996 * 120.00338 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.59919 * 185.99896 * 27 18 17 51 51 H 1.08995 * 109.73081 * 65.60046 * 27 18 17 52 52 H 1.08998 * 109.48086 * 182.80985 * 28 14 13 53 53 H 1.09002 * 109.48291 * 302.83138 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7500 2.5703 1.1814 6 6 4.6895 2.6990 2.2504 7 1 5.0658 1.7133 2.5240 8 6 4.0019 3.3362 3.4596 9 6 5.8372 3.5699 1.8084 10 8 5.7735 4.1691 0.7560 11 7 6.9345 3.6830 2.5828 12 6 8.0819 4.5726 2.3236 13 6 9.2722 3.9204 3.0723 14 6 8.5763 3.3681 4.3369 15 6 7.1905 2.9392 3.8300 16 6 8.4493 4.4636 5.3869 17 6 9.8475 4.9241 5.8148 18 7 10.6241 3.7483 6.2309 19 6 11.2206 3.7080 7.4629 20 1 10.8011 4.2697 8.2845 21 6 12.3642 2.9454 7.6558 22 7 13.0439 2.5045 6.6185 23 14 12.9385 2.5446 9.3876 24 1 12.0075 3.1538 10.3712 25 1 12.9609 1.0714 9.5732 26 1 14.3037 3.0906 9.5951 27 6 10.7496 2.6161 5.3028 28 6 9.3453 2.1706 4.8783 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1317 0.0895 33 1 2.6214 1.4025 -0.9314 34 1 3.7399 0.5065 1.0921 35 1 2.4772 1.2356 2.1131 36 1 4.7421 3.5379 4.2339 37 1 3.5281 4.2702 3.1578 38 1 3.2458 2.6544 3.8487 39 1 7.8857 5.5694 2.7188 40 1 8.2884 4.6233 1.2545 41 1 9.7100 3.1143 2.4835 42 1 10.0246 4.6645 3.3337 43 1 7.1835 1.8676 3.6305 44 1 6.4315 3.1832 4.5732 45 1 7.9013 5.3074 4.9674 46 1 7.9131 4.0764 6.2532 47 1 9.7638 5.6207 6.6490 48 1 10.3443 5.4123 4.9763 49 1 13.8429 1.9713 6.7533 50 1 11.2604 1.7912 5.7993 51 1 11.3173 2.9219 4.4240 52 1 8.8186 1.7595 5.7395 53 1 9.4244 1.4085 4.1030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323826403.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:48 Heat of formation + Delta-G solvation = -58.541976 kcal Electronic energy + Delta-G solvation = -30119.006273 eV Core-core repulsion = 26183.961495 eV Total energy + Delta-G solvation = -3935.044778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.70460 -40.21035 -38.80013 -37.32510 -36.00334 -34.73587 -33.13802 -32.39608 -31.50048 -30.56202 -29.80082 -28.49955 -26.08729 -25.51980 -24.15966 -23.81190 -23.20042 -22.58210 -20.86702 -20.32584 -19.62249 -18.59702 -18.02512 -17.76786 -17.27434 -16.81813 -16.64428 -16.26858 -16.07604 -15.64876 -15.60271 -15.11961 -14.95456 -14.80632 -14.52833 -14.42186 -14.19902 -13.88706 -13.75461 -13.68221 -13.44403 -13.23744 -13.17966 -12.99034 -12.95574 -12.57604 -12.47170 -12.26078 -12.22565 -12.12233 -12.05760 -11.97566 -11.86398 -11.73000 -11.37670 -11.19462 -11.03360 -10.92626 -10.52350 -10.44715 -10.26446 -9.70056 -8.59997 -7.82117 -5.27319 1.32900 1.47610 1.49274 1.50384 1.59658 1.69504 2.54238 2.78055 3.30454 3.35920 3.54538 3.72617 3.80420 3.84066 3.88299 3.93870 4.07284 4.14905 4.23932 4.25257 4.29315 4.36849 4.44686 4.44777 4.51503 4.60466 4.69288 4.72476 4.74707 4.78299 4.82064 4.87888 4.89325 4.96866 5.02933 5.03868 5.09618 5.12032 5.19376 5.24393 5.28339 5.34311 5.42432 5.47908 5.61553 5.71047 5.73504 5.85215 5.88873 6.08994 6.44994 6.45759 7.06356 7.21288 7.93910 8.43175 9.23019 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.002180 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.959478 B =12842.467424 C =13388.522462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C -0.092 4.092 4 C 0.060 3.940 5 O -0.388 6.388 6 C 0.079 3.921 7 H 0.108 0.892 8 C -0.167 4.167 9 C 0.524 3.476 10 O -0.576 6.576 11 N -0.610 5.610 12 C 0.111 3.889 13 C -0.117 4.117 14 C -0.052 4.052 15 C 0.108 3.892 16 C -0.106 4.106 17 C 0.140 3.860 18 N -0.608 5.608 19 C -0.254 4.254 20 H 0.065 0.935 21 C -0.053 4.053 22 N -0.935 5.935 23 Si 0.962 3.038 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.297 1.297 27 C 0.177 3.823 28 C -0.112 4.112 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.049 0.951 48 H 0.018 0.982 49 H 0.248 0.752 50 H 0.054 0.946 51 H -0.002 1.002 52 H 0.059 0.941 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.176 -4.360 -8.091 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.180 4.180 3 C -0.129 4.129 4 C -0.016 4.016 5 O -0.307 6.307 6 C 0.018 3.982 7 H 0.126 0.874 8 C -0.224 4.224 9 C 0.313 3.687 10 O -0.456 6.456 11 N -0.344 5.344 12 C -0.011 4.011 13 C -0.155 4.155 14 C -0.052 4.052 15 C -0.014 4.014 16 C -0.145 4.145 17 C 0.015 3.985 18 N -0.332 5.332 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.248 4.248 22 N -0.582 5.582 23 Si 0.791 3.209 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.224 1.224 27 C 0.051 3.949 28 C -0.152 4.152 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.068 0.932 48 H 0.035 0.965 49 H 0.057 0.943 50 H 0.073 0.927 51 H 0.016 0.984 52 H 0.078 0.922 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.196 -3.978 -8.818 24.212 hybrid contribution 1.179 -0.265 0.809 1.454 sum -21.017 -4.243 -8.009 22.888 Atomic orbital electron populations 1.24079 0.95778 1.02809 0.99517 1.22815 0.96249 0.97633 1.01300 1.20623 0.97715 0.96616 0.97972 1.22725 0.94301 0.85125 0.99425 1.87990 1.54195 1.39054 1.49509 1.21908 0.88164 0.99536 0.88600 0.87432 1.22261 1.02163 1.02168 0.95823 1.20660 0.82836 0.82317 0.82882 1.90679 1.81088 1.49130 1.24655 1.48611 1.18046 1.42490 1.25281 1.22247 0.84820 0.93717 1.00319 1.22780 0.96416 1.00741 0.95588 1.20859 0.93473 0.96179 0.94721 1.22434 0.97171 0.96710 0.85042 1.21774 0.97405 0.97632 0.97707 1.21105 0.91304 0.89102 0.97011 1.44299 1.59297 1.14354 1.15201 1.19547 1.04285 1.26773 0.87831 0.91682 1.25727 0.96183 1.02684 1.00162 1.70159 1.17738 1.40545 1.29797 0.85274 0.77459 0.77288 0.80839 1.19142 1.21779 1.22408 1.20627 0.92676 0.90647 0.90953 1.21897 0.97168 0.96103 0.99996 0.86926 0.88339 0.86150 0.91056 0.91159 0.92128 0.91292 0.89596 0.92343 0.88921 0.90755 0.91580 0.91086 0.90258 0.89634 0.88804 0.90736 0.91638 0.93204 0.96460 0.94306 0.92741 0.98391 0.92181 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 14.32 67.78 0.97 -0.95 16 2 C -0.16 -1.92 9.52 25.65 0.24 -1.67 16 3 C -0.09 -1.41 6.03 29.85 0.18 -1.23 16 4 C 0.06 0.95 5.73 71.98 0.41 1.37 16 5 O -0.39 -9.16 9.54 -130.11 -1.24 -10.40 16 6 C 0.08 1.59 2.53 29.85 0.08 1.67 16 7 H 0.11 1.62 7.61 -2.39 -0.02 1.60 16 8 C -0.17 -2.57 9.45 71.98 0.68 -1.89 16 9 C 0.52 14.49 7.18 87.66 0.63 15.12 16 10 O -0.58 -21.35 16.76 15.85 0.27 -21.09 16 11 N -0.61 -14.89 3.34 -811.63 -2.71 -17.60 16 12 C 0.11 2.86 6.60 86.88 0.57 3.43 16 13 C -0.12 -3.21 4.92 31.81 0.16 -3.05 16 14 C -0.05 -1.37 0.55 -51.91 -0.03 -1.40 16 15 C 0.11 2.22 5.32 86.42 0.46 2.68 16 16 C -0.11 -3.00 4.74 30.46 0.14 -2.85 16 17 C 0.14 5.26 6.19 86.40 0.53 5.79 16 18 N -0.61 -28.38 2.99 -698.60 -2.09 -30.46 16 19 C -0.25 -13.35 9.59 84.03 0.81 -12.54 16 20 H 0.07 3.35 7.87 -2.91 -0.02 3.33 16 21 C -0.05 -2.85 4.97 84.86 0.42 -2.43 16 22 N -0.94 -53.79 11.02 21.65 0.24 -53.55 16 23 Si 0.96 43.73 29.58 68.60 2.03 45.76 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 27 C 0.18 7.84 5.03 86.40 0.43 8.27 16 28 C -0.11 -3.60 4.72 30.46 0.14 -3.45 16 29 H 0.11 0.85 8.06 -2.92 -0.02 0.83 16 30 H 0.10 0.98 7.84 -2.91 -0.02 0.96 16 31 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.07 1.13 7.79 -2.39 -0.02 1.11 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 0.83 8.08 -2.39 -0.02 0.81 16 35 H 0.07 0.85 8.03 -2.39 -0.02 0.83 16 36 H 0.09 1.17 5.62 -2.39 -0.01 1.16 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.01 8.03 -2.39 -0.02 0.99 16 39 H 0.07 1.82 7.74 -2.38 -0.02 1.81 16 40 H 0.07 1.83 7.99 -2.39 -0.02 1.81 16 41 H 0.07 1.98 8.01 -2.39 -0.02 1.96 16 42 H 0.08 2.41 6.08 -2.38 -0.01 2.40 16 43 H 0.09 1.53 7.76 -2.39 -0.02 1.51 16 44 H 0.09 1.57 5.67 -2.39 -0.01 1.56 16 45 H 0.07 1.80 7.47 -2.39 -0.02 1.79 16 46 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 47 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 48 H 0.02 0.67 6.47 -2.39 -0.02 0.65 16 49 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 50 H 0.05 2.83 5.91 -2.39 -0.01 2.82 16 51 H 0.00 -0.09 7.56 -2.39 -0.02 -0.11 16 52 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 53 H 0.07 1.95 8.11 -2.39 -0.02 1.93 16 Total: -1.00 -69.09 406.51 4.20 -64.90 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.86 Total: 15.57 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 6.84 Total: 6.87 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -4.56 Total: -101.62 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.98 Total: -31.49 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -69.09 4.20 -64.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323826403.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.356 kcal (2) G-P(sol) polarization free energy of solvation -69.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds