Wall clock time and date at job start Tue Mar 31 2020 20:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.47092 * 2 1 4 4 C 1.34776 * 120.00209 * 82.92427 * 3 2 1 5 5 O 1.21347 * 120.00007 * 184.11169 * 4 3 2 6 6 C 1.49457 * 119.99820 * 4.10969 * 4 3 2 7 7 O 1.21349 * 119.99806 * 355.24249 * 6 4 3 8 8 N 1.34777 * 119.99779 * 175.24079 * 6 4 3 9 9 C 1.46927 * 120.62969 * 7.11443 * 8 6 4 10 10 C 1.53194 * 108.77473 * 126.36763 * 9 8 6 11 11 C 1.53035 * 109.31121 * 54.63214 * 10 9 8 12 12 C 1.53042 * 109.54064 * 298.63339 * 11 10 9 13 13 H 1.09001 * 109.49508 * 301.41543 * 12 11 10 14 14 C 1.50703 * 109.50013 * 181.34834 * 12 11 10 15 15 H 1.08002 * 119.99741 * 0.02562 * 14 12 11 16 16 C 1.37874 * 120.00106 * 179.97438 * 14 12 11 17 17 N 1.31516 * 120.00112 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 119.99943 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46741 * 90.00201 * 18 16 14 20 20 H 1.48496 * 109.46806 * 209.99921 * 18 16 14 21 21 H 1.48495 * 109.47024 * 330.00121 * 18 16 14 22 22 C 1.46924 * 120.62732 * 186.83081 * 8 6 4 23 23 C 1.46499 * 119.99730 * 262.93215 * 3 2 1 24 24 C 1.53784 * 113.61134 * 223.55390 * 23 3 2 25 25 C 1.53784 * 87.08001 * 220.01817 * 24 23 3 26 26 C 1.53004 * 113.61250 * 270.88138 * 25 24 23 27 27 C 1.53001 * 113.61463 * 139.97816 * 25 24 23 28 28 C 1.53779 * 87.08224 * 25.42996 * 25 24 23 29 29 H 1.09003 * 109.47236 * 60.00476 * 1 2 3 30 30 H 1.09007 * 109.46496 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47440 * 299.99855 * 1 2 3 32 32 H 1.08995 * 109.47440 * 240.00145 * 2 1 3 33 33 H 1.09003 * 109.47236 * 119.99524 * 2 1 3 34 34 H 1.09002 * 109.58239 * 246.15124 * 9 8 6 35 35 H 1.08996 * 109.58573 * 6.57456 * 9 8 6 36 36 H 1.09000 * 109.49585 * 174.58235 * 10 9 8 37 37 H 1.08995 * 109.49718 * 294.68333 * 10 9 8 38 38 H 1.09000 * 109.46609 * 58.65768 * 11 10 9 39 39 H 1.08999 * 109.46257 * 178.61296 * 11 10 9 40 40 H 0.97001 * 119.99882 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.58667 * 353.42000 * 22 8 6 42 42 H 1.08995 * 109.58541 * 113.84406 * 22 8 6 43 43 H 1.08998 * 112.85237 * 354.85745 * 23 3 2 44 44 H 1.08998 * 113.61056 * 334.56069 * 24 23 3 45 45 H 1.08996 * 113.61743 * 105.47312 * 24 23 3 46 46 H 1.09005 * 109.46880 * 157.49498 * 26 25 24 47 47 H 1.08996 * 109.47107 * 277.49454 * 26 25 24 48 48 H 1.08996 * 109.47195 * 37.49838 * 26 25 24 49 49 H 1.08993 * 109.47309 * 322.50018 * 27 25 24 50 50 H 1.09000 * 109.46812 * 82.50654 * 27 25 24 51 51 H 1.09003 * 109.47226 * 202.49880 * 27 25 24 52 52 H 1.09003 * 113.61857 * 220.02187 * 28 25 24 53 53 H 1.09004 * 113.68887 * 89.12680 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1074 2.0646 1.1583 5 8 2.4405 3.2314 1.1503 6 6 1.7960 1.3852 2.4525 7 8 1.3801 0.2452 2.4546 8 7 1.9770 2.0386 3.6173 9 6 2.3299 3.4649 3.6285 10 6 1.3266 4.2141 4.5111 11 6 1.2882 3.5652 5.8965 12 6 0.8272 2.1115 5.7683 13 1 -0.1585 2.0820 5.3040 14 6 0.7579 1.4832 7.1364 15 1 1.0163 2.0626 8.0104 16 6 0.3636 0.1690 7.2722 17 7 0.0476 -0.5361 6.2080 18 14 0.2770 -0.6096 8.9681 19 1 -1.0785 -0.4036 9.5386 20 1 0.5524 -2.0647 8.8593 21 1 1.2881 0.0207 9.8543 22 6 1.8193 1.3398 4.9000 23 6 2.4097 2.0198 -1.2591 24 6 3.7182 2.8219 -1.1623 25 6 3.0443 3.8787 -2.0533 26 6 3.2426 3.6346 -3.5507 27 6 3.3545 5.3183 -1.6384 28 6 1.6998 3.3593 -1.5173 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.3351 3.5894 4.0311 35 1 2.2892 3.8593 2.6132 36 1 1.6325 5.2560 4.6057 37 1 0.3363 4.1647 4.0587 38 1 2.2843 3.5926 6.3383 39 1 0.5933 4.1115 6.5343 40 1 -0.2295 -1.4608 6.3036 41 1 1.4418 0.3326 4.7234 42 1 2.7820 1.2875 5.4084 43 1 2.3762 1.3372 -2.1082 44 1 3.9395 3.1764 -0.1557 45 1 4.5680 2.3298 -1.6353 46 1 2.4534 4.1385 -4.1087 47 1 4.2120 4.0271 -3.8575 48 1 3.2036 2.5642 -3.7526 49 1 3.3910 5.3831 -0.5510 50 1 4.3177 5.6162 -2.0527 51 1 2.5759 5.9811 -2.0160 52 1 0.9200 3.3009 -2.2768 53 1 1.3680 3.8601 -0.6077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327382721.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:46 Heat of formation + Delta-G solvation = -43.774747 kcal Electronic energy + Delta-G solvation = -31691.649791 eV Core-core repulsion = 27757.245368 eV Total energy + Delta-G solvation = -3934.404423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.43687 -40.78026 -38.96087 -38.67524 -36.71104 -35.14316 -33.43651 -32.06314 -31.53992 -30.30815 -28.21061 -27.62998 -26.85170 -26.65579 -25.19572 -24.08305 -23.48621 -22.65806 -20.95136 -19.92891 -19.19829 -18.61521 -17.93467 -17.57020 -17.11856 -16.96655 -16.49437 -16.47738 -15.63932 -15.48468 -15.38794 -15.15131 -14.79869 -14.60744 -14.54451 -14.40749 -14.22106 -14.01775 -13.92186 -13.83781 -13.47178 -13.32128 -13.14033 -12.89039 -12.84933 -12.67158 -12.48169 -12.33493 -12.29636 -12.18052 -12.12439 -12.02889 -11.70810 -11.62702 -11.36151 -11.09284 -10.99203 -10.98606 -10.84427 -10.54206 -9.86589 -9.61768 -9.44272 -8.11524 -6.28525 0.41715 1.35943 1.41557 1.42724 1.52308 2.18932 2.39943 2.48192 3.14401 3.20640 3.57526 3.67284 3.84981 3.87757 4.11275 4.16329 4.18011 4.32112 4.36011 4.41745 4.45358 4.58069 4.61905 4.66746 4.71772 4.77082 4.81689 4.84882 4.87033 4.93234 4.97735 5.03747 5.04996 5.07911 5.14022 5.17032 5.22773 5.24173 5.26797 5.30245 5.31324 5.33458 5.48855 5.51717 5.55610 5.61073 5.80333 5.85508 5.95016 6.06939 6.29453 6.46409 6.77466 6.83970 7.07530 7.41075 8.91953 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019572 B = 0.003231 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.281047 B = 8663.886019 C = 9715.408839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.089 3.911 3 N -0.564 5.564 4 C 0.517 3.483 5 O -0.510 6.510 6 C 0.479 3.521 7 O -0.540 6.540 8 N -0.577 5.577 9 C 0.055 3.945 10 C -0.123 4.123 11 C -0.107 4.107 12 C 0.041 3.959 13 H -0.014 1.014 14 C -0.537 4.537 15 H 0.061 0.939 16 C 0.012 3.988 17 N -0.911 5.911 18 Si 0.958 3.042 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.264 1.264 22 C 0.123 3.877 23 C 0.116 3.884 24 C -0.147 4.147 25 C -0.074 4.074 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.142 4.142 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.022 0.978 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.261 0.739 41 H 0.087 0.913 42 H 0.040 0.960 43 H 0.143 0.857 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.044 0.956 50 H 0.061 0.939 51 H 0.056 0.944 52 H 0.078 0.922 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.965 7.312 -20.708 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 N -0.294 5.294 4 C 0.300 3.700 5 O -0.390 6.390 6 C 0.263 3.737 7 O -0.419 6.419 8 N -0.309 5.309 9 C -0.065 4.065 10 C -0.161 4.161 11 C -0.144 4.144 12 C 0.022 3.978 13 H 0.004 0.996 14 C -0.575 4.575 15 H 0.079 0.921 16 C -0.187 4.187 17 N -0.550 5.550 18 Si 0.784 3.216 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.189 1.189 22 C 0.002 3.998 23 C 0.014 3.986 24 C -0.185 4.185 25 C -0.075 4.075 26 C -0.182 4.182 27 C -0.188 4.188 28 C -0.180 4.180 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.171 0.829 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.161 0.839 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.063 0.937 50 H 0.080 0.920 51 H 0.075 0.925 52 H 0.096 0.904 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.871 7.120 -20.773 23.009 hybrid contribution -0.511 -0.841 1.592 1.871 sum 6.360 6.279 -19.181 21.161 Atomic orbital electron populations 1.21977 0.95640 1.02599 1.00661 1.22218 0.95068 0.80817 1.05174 1.47955 1.60958 1.14858 1.05667 1.19941 0.78681 0.86317 0.85038 1.90219 1.47867 1.15793 1.85108 1.20613 0.80238 0.86773 0.86115 1.90658 1.45296 1.19117 1.86787 1.48464 1.64781 1.12128 1.05547 1.23264 0.97868 0.78564 1.06833 1.21875 0.98842 1.00051 0.95317 1.21552 1.00480 0.95992 0.96399 1.18795 0.92732 0.92293 0.94019 0.99567 1.21469 1.45877 0.97100 0.93102 0.92115 1.25866 0.94543 0.97985 1.00347 1.70061 1.45445 1.09358 1.30124 0.85552 0.78591 0.77434 0.80073 1.20208 1.21034 1.18851 1.21792 0.98077 0.99002 0.80976 1.23155 0.96645 0.93985 0.84812 1.23566 0.96434 0.97128 1.01370 1.21553 0.95276 0.94883 0.95777 1.21621 1.02347 1.02303 0.91943 1.21649 1.01444 0.94929 1.00750 1.23463 0.97428 0.95837 1.01270 0.91434 0.90756 0.95866 0.87231 0.89313 0.91558 0.82857 0.88475 0.93690 0.92572 0.92975 0.92967 0.89500 0.94141 0.83945 0.89895 0.90367 0.91730 0.91715 0.91547 0.93687 0.91991 0.92455 0.90369 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.74 71.98 0.70 -3.25 16 2 C 0.09 2.22 5.75 86.38 0.50 2.72 16 3 N -0.56 -14.66 2.74 -796.45 -2.18 -16.84 16 4 C 0.52 16.92 7.04 87.27 0.61 17.54 16 5 O -0.51 -16.22 8.70 -3.24 -0.03 -16.25 16 6 C 0.48 19.78 7.51 87.27 0.66 20.44 16 7 O -0.54 -24.83 11.29 -3.24 -0.04 -24.87 16 8 N -0.58 -24.73 2.98 -821.32 -2.45 -27.17 16 9 C 0.06 1.94 6.16 86.36 0.53 2.47 16 10 C -0.12 -4.29 6.08 30.67 0.19 -4.10 16 11 C -0.11 -4.43 5.11 30.62 0.16 -4.28 16 12 C 0.04 2.12 2.24 -11.60 -0.03 2.09 16 13 H -0.01 -0.83 8.14 -2.39 -0.02 -0.84 16 14 C -0.54 -29.95 8.56 25.60 0.22 -29.73 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 16 C 0.01 0.69 5.31 84.65 0.45 1.14 16 17 N -0.91 -54.56 11.39 21.45 0.24 -54.32 16 18 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 22 C 0.12 6.25 5.39 86.22 0.46 6.71 16 23 C 0.12 2.21 4.06 45.52 0.19 2.39 16 24 C -0.15 -2.85 6.48 31.12 0.20 -2.65 16 25 C -0.07 -1.22 1.39 -51.65 -0.07 -1.29 16 26 C -0.13 -1.40 9.07 71.98 0.65 -0.75 16 27 C -0.13 -2.27 9.20 71.98 0.66 -1.60 16 28 C -0.14 -2.77 6.58 31.12 0.20 -2.56 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.02 0.78 7.04 -2.39 -0.02 0.77 16 32 H 0.11 1.85 7.85 -2.39 -0.02 1.83 16 33 H 0.09 2.85 5.37 -2.46 -0.01 2.83 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.16 5.15 3.92 -76.13 -0.30 4.85 16 36 H 0.10 2.68 8.14 -2.39 -0.02 2.67 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.09 5.09 5.11 -2.39 -0.01 5.08 16 42 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.14 1.84 7.40 -2.39 -0.02 1.83 16 44 H 0.08 2.11 5.49 -2.39 -0.01 2.10 16 45 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 46 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.07 0.61 7.34 -2.39 -0.02 0.60 16 49 H 0.04 0.96 7.94 -2.39 -0.02 0.94 16 50 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 51 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 53 H 0.07 1.88 6.22 -2.38 -0.01 1.86 16 Total: -1.00 -66.44 395.41 4.45 -61.98 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.59 Total: 25.97 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 6.28 Total: 5.28 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -4.39 Total: -98.33 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.06 Total: -41.12 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.44 4.45 -61.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327382721.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.209 kcal (2) G-P(sol) polarization free energy of solvation -66.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds