Wall clock time and date at job start Tue Mar 31 2020 19:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46885 * 2 1 4 4 N 1.46504 * 109.47174 * 119.99898 * 2 1 3 5 5 C 1.34774 * 120.00046 * 274.99871 * 4 2 1 6 6 O 1.21355 * 119.99516 * 0.02562 * 5 4 2 7 7 C 1.49445 * 119.99928 * 179.97438 * 5 4 2 8 8 O 1.21344 * 120.00262 * 0.02562 * 7 5 4 9 9 N 1.34776 * 119.99528 * 179.97438 * 7 5 4 10 10 C 1.46504 * 119.99645 * 180.02562 * 9 7 5 11 11 C 1.53006 * 109.47377 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47425 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47232 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99694 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00237 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99476 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00296 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46778 * 59.99909 * 17 15 13 19 19 H 1.48497 * 109.47267 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47102 * 300.00027 * 17 15 13 21 21 C 1.52997 * 109.46742 * 239.99987 * 2 1 3 22 22 H 1.09007 * 109.47194 * 304.73600 * 21 2 1 23 23 C 1.52995 * 109.47386 * 64.74256 * 21 2 1 24 24 C 1.53004 * 109.47294 * 119.99945 * 23 21 2 25 25 C 1.52998 * 109.47030 * 299.99716 * 24 23 21 26 26 C 1.53001 * 109.47089 * 59.99789 * 25 24 23 27 27 C 1.53005 * 109.47239 * 0.02562 * 26 25 24 28 28 C 1.52997 * 109.47348 * 59.99098 * 27 26 25 29 29 C 1.52995 * 109.47386 * 300.00736 * 28 27 26 30 30 H 1.09000 * 109.46681 * 294.83220 * 1 2 3 31 31 H 1.08997 * 109.47459 * 54.83184 * 1 2 3 32 32 H 1.09003 * 109.46705 * 174.83890 * 1 2 3 33 33 H 0.96996 * 119.99814 * 94.99843 * 4 2 1 34 34 H 0.96996 * 120.00540 * 0.02562 * 9 7 5 35 35 H 1.09004 * 109.47252 * 300.00116 * 10 9 7 36 36 H 1.09002 * 109.47188 * 60.00646 * 10 9 7 37 37 H 1.08998 * 109.46986 * 300.00594 * 11 10 9 38 38 H 1.09004 * 109.46677 * 59.99569 * 11 10 9 39 39 H 1.08998 * 109.47502 * 300.00252 * 12 11 10 40 40 H 1.09005 * 109.46823 * 60.00075 * 12 11 10 41 41 H 0.97005 * 119.99632 * 180.02562 * 16 15 13 42 42 H 1.09008 * 109.46825 * 239.99749 * 23 21 2 43 43 H 1.08996 * 109.47285 * 359.97438 * 23 21 2 44 44 H 1.09003 * 109.46961 * 180.02562 * 24 23 21 45 45 H 1.08991 * 109.47398 * 179.97438 * 25 24 23 46 46 H 1.09002 * 109.47057 * 300.00513 * 25 24 23 47 47 H 1.08996 * 109.47759 * 240.00266 * 26 25 24 48 48 H 1.09001 * 109.46887 * 120.00099 * 26 25 24 49 49 H 1.08992 * 109.47453 * 179.97438 * 27 26 25 50 50 H 1.08999 * 109.47297 * 180.02562 * 28 27 26 51 51 H 1.09001 * 109.46779 * 60.00475 * 28 27 26 52 52 H 1.09006 * 109.47326 * 239.99805 * 29 28 27 53 53 H 1.08999 * 109.47644 * 119.99799 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1472 -0.0182 2.3571 6 8 1.8581 1.1591 2.4116 7 6 2.6448 -0.7229 3.5775 8 8 2.9334 -1.9002 3.5231 9 7 2.7740 -0.0503 4.7383 10 6 3.2623 -0.7409 5.9345 11 6 3.3139 0.2422 7.1057 12 6 3.8245 -0.4788 8.3548 13 6 3.8746 0.4894 9.5085 14 1 3.5729 1.5164 9.3651 15 6 4.3067 0.0644 10.7469 16 7 4.6746 -1.1862 10.9214 17 14 4.3695 1.2647 12.1769 18 1 3.0079 1.7981 12.4355 19 1 4.8650 0.5648 13.3892 20 1 5.2848 2.3852 11.8427 21 6 2.0399 -0.7213 -1.2492 22 1 1.6089 -1.7216 -1.2927 23 6 1.6297 0.0655 -2.4956 24 6 2.8815 0.4859 -3.2684 25 6 3.7600 1.3654 -2.3766 26 6 4.1703 0.5787 -1.1301 27 6 3.5658 -0.8256 -1.1913 28 6 4.0761 -1.5466 -2.4405 29 6 3.6658 -0.7598 -3.6869 30 1 -0.3633 0.4316 0.9327 31 1 -0.3634 0.5919 -0.8400 32 1 -0.3633 -1.0235 -0.0924 33 1 2.2491 -1.6317 1.1526 34 1 2.5437 0.8909 4.7817 35 1 2.5895 -1.5627 6.1797 36 1 4.2614 -1.1334 5.7450 37 1 3.9864 1.0643 6.8607 38 1 2.3146 0.6344 7.2950 39 1 3.1523 -1.3011 8.6000 40 1 4.8238 -0.8706 8.1651 41 1 4.9782 -1.4853 11.7928 42 1 1.0037 -0.5611 -3.1311 43 1 1.0711 0.9528 -2.1977 44 1 2.5891 1.0468 -4.1562 45 1 4.6520 1.6645 -2.9269 46 1 3.2018 2.2529 -2.0785 47 1 3.8070 1.0924 -0.2401 48 1 5.2570 0.5045 -1.0886 49 1 3.8584 -1.3862 -0.3036 50 1 3.6451 -2.5467 -2.4844 51 1 5.1628 -1.6204 -2.3989 52 1 3.0401 -1.3864 -4.3226 53 1 4.5576 -0.4600 -4.2373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327507371.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:39 Heat of formation + Delta-G solvation = -134.192839 kcal Electronic energy + Delta-G solvation = -29452.381480 eV Core-core repulsion = 25514.056235 eV Total energy + Delta-G solvation = -3938.325245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.14213 -41.29719 -39.62331 -37.29029 -36.70049 -35.22700 -33.11063 -32.96807 -32.23360 -31.72723 -29.78048 -28.95086 -26.51133 -24.99215 -23.73044 -23.46651 -22.83440 -22.38015 -21.69416 -21.29141 -19.55014 -18.51822 -18.07437 -17.49526 -17.26730 -17.19488 -16.95628 -16.68777 -16.56381 -16.27366 -16.03891 -15.50581 -14.97974 -14.88107 -14.35352 -14.26809 -13.89462 -13.79318 -13.54650 -13.41076 -13.23087 -13.00393 -12.94661 -12.91522 -12.86349 -12.78283 -12.73910 -12.73370 -12.55079 -12.44220 -12.34181 -12.07672 -11.70606 -11.55988 -11.38479 -11.25667 -10.82422 -10.71567 -10.64329 -10.60944 -10.54616 -10.33075 -10.21964 -8.19666 -6.30719 0.31374 1.29611 1.41811 1.44388 1.52323 2.11228 2.41400 2.62687 3.14000 3.39510 3.48811 3.60800 3.73941 4.00931 4.07112 4.13112 4.16781 4.23729 4.37834 4.45012 4.47065 4.48813 4.51137 4.51242 4.56047 4.57428 4.66125 4.74048 4.77184 4.85646 4.87350 4.90275 5.01718 5.13635 5.14003 5.17386 5.21610 5.24590 5.25249 5.32001 5.39431 5.45516 5.46496 5.50661 5.51898 5.52418 5.60455 5.69818 5.83729 5.91373 6.22474 6.33557 6.71166 6.85839 6.91742 7.38495 8.91952 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025757 B = 0.001780 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.808455 B =15722.376533 C =15862.626403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.081 0.919 4 N -0.681 5.681 5 C 0.515 3.485 6 O -0.541 6.541 7 C 0.499 3.501 8 O -0.548 6.548 9 N -0.687 5.687 10 C 0.127 3.873 11 C -0.106 4.106 12 C 0.025 3.975 13 C -0.544 4.544 14 H 0.064 0.936 15 C -0.002 4.002 16 N -0.932 5.932 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.267 1.267 21 C -0.080 4.080 22 H 0.089 0.911 23 C -0.104 4.104 24 C -0.085 4.085 25 C -0.113 4.113 26 C -0.117 4.117 27 C -0.083 4.083 28 C -0.112 4.112 29 C -0.111 4.111 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.417 0.583 34 H 0.419 0.581 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.067 0.933 39 H -0.004 1.004 40 H -0.004 1.004 41 H 0.263 0.737 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.045 0.955 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.068 0.932 51 H 0.057 0.943 52 H 0.071 0.929 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.582 2.075 -34.639 35.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.099 0.901 4 N -0.334 5.334 5 C 0.295 3.705 6 O -0.418 6.418 7 C 0.280 3.720 8 O -0.426 6.426 9 N -0.339 5.339 10 C 0.004 3.996 11 C -0.144 4.144 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.082 0.918 15 C -0.200 4.200 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.192 1.192 21 C -0.099 4.099 22 H 0.108 0.892 23 C -0.141 4.141 24 C -0.103 4.103 25 C -0.150 4.150 26 C -0.155 4.155 27 C -0.102 4.102 28 C -0.150 4.150 29 C -0.149 4.149 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.254 0.746 34 H 0.256 0.744 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.075 0.925 52 H 0.089 0.911 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.520 1.960 -34.519 35.184 hybrid contribution 0.411 0.249 1.412 1.492 sum -6.110 2.209 -33.106 33.738 Atomic orbital electron populations 1.22208 0.93981 1.03283 1.02523 1.21420 0.94729 0.97143 0.82691 0.90068 1.45887 1.64006 1.15085 1.08383 1.19904 0.79091 0.86649 0.84855 1.90752 1.49972 1.16003 1.85079 1.20427 0.79461 0.86914 0.85197 1.90743 1.50193 1.16272 1.85412 1.45890 1.63881 1.15333 1.08835 1.21472 0.99291 0.95681 0.83117 1.21640 1.01748 0.97768 0.93214 1.18929 0.94949 0.95210 0.92169 1.21646 1.43806 0.97192 0.95504 0.91784 1.25992 0.94895 0.97034 1.02065 1.70097 1.45242 1.17382 1.24536 0.85488 0.78924 0.78725 0.77832 1.19171 1.21024 1.19165 1.21431 0.95105 1.00239 0.93149 0.89226 1.21605 0.97227 1.00236 0.95080 1.21058 0.95066 0.96188 0.98024 1.21536 0.99737 0.97899 0.95877 1.21549 0.99969 0.95914 0.98057 1.21054 0.94711 0.96040 0.98364 1.21522 1.00477 0.98923 0.94061 1.21547 0.99994 0.96381 0.96968 0.94007 0.89368 0.91154 0.74612 0.74409 0.91756 0.91793 0.91511 0.91471 0.98524 0.98549 0.92784 0.90001 0.91121 0.90142 0.91927 0.92299 0.93605 0.92718 0.92149 0.91297 0.92454 0.91058 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.19 71.98 0.66 -1.50 16 2 C 0.14 2.14 1.45 44.99 0.07 2.20 16 3 H 0.08 1.50 6.13 -2.39 -0.01 1.49 16 4 N -0.68 -12.90 4.32 -443.87 -1.92 -14.82 16 5 C 0.51 13.10 7.85 87.27 0.69 13.79 16 6 O -0.54 -15.68 16.14 -3.26 -0.05 -15.74 16 7 C 0.50 14.77 7.89 87.27 0.69 15.45 16 8 O -0.55 -18.45 16.48 -3.23 -0.05 -18.50 16 9 N -0.69 -20.45 5.55 -464.40 -2.58 -23.02 16 10 C 0.13 4.41 5.67 86.38 0.49 4.90 16 11 C -0.11 -4.11 5.27 30.59 0.16 -3.95 16 12 C 0.03 1.30 4.97 29.85 0.15 1.44 16 13 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 14 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 15 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 16 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 17 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 C -0.08 -0.85 1.85 -10.78 -0.02 -0.87 16 22 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 23 C -0.10 -0.85 4.91 30.59 0.15 -0.70 16 24 C -0.08 -0.77 3.20 -10.78 -0.03 -0.80 16 25 C -0.11 -1.36 5.71 30.59 0.17 -1.18 16 26 C -0.12 -1.77 5.36 30.60 0.16 -1.61 16 27 C -0.08 -1.08 2.51 -10.78 -0.03 -1.10 16 28 C -0.11 -1.21 5.71 30.59 0.17 -1.03 16 29 C -0.11 -0.98 5.71 30.61 0.17 -0.80 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.86 6.88 -2.39 -0.02 0.84 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.42 7.17 7.57 -92.71 -0.70 6.47 16 34 H 0.42 11.25 7.94 -92.71 -0.74 10.51 16 35 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 41 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 42 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 43 H 0.07 0.59 6.53 -2.39 -0.02 0.57 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.05 0.86 6.54 -2.39 -0.02 0.84 16 48 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 49 H 0.06 0.93 7.15 -2.39 -0.02 0.91 16 50 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.07 0.50 8.14 -2.38 -0.02 0.49 16 53 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -67.23 409.78 1.52 -65.70 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.54 Total: 22.32 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 4.35 Total: -5.62 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -4.21 Total: -94.21 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.11 Total: -34.24 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -67.23 1.52 -65.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327507371.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.489 kcal (2) G-P(sol) polarization free energy of solvation -67.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds