Wall clock time and date at job start Tue Mar 31 2020 21:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47064 * 2 1 4 4 C 1.36936 * 119.99973 * 275.46484 * 3 2 1 5 5 H 1.07995 * 120.00323 * 321.48642 * 4 3 2 6 6 C 1.38812 * 119.99978 * 141.48673 * 4 3 2 7 7 N 1.31620 * 119.99883 * 338.80789 * 6 4 3 8 8 Si 1.86799 * 120.00040 * 158.80157 * 6 4 3 9 9 H 1.48496 * 109.47541 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47025 * 120.00566 * 8 6 4 11 11 H 1.48504 * 109.47135 * 240.00130 * 8 6 4 12 12 C 1.46502 * 119.99862 * 95.46593 * 3 2 1 13 13 C 1.53004 * 109.46964 * 89.99938 * 12 3 2 14 14 C 1.53041 * 109.46142 * 295.02632 * 13 12 3 15 15 C 1.53186 * 109.31135 * 178.60185 * 14 13 12 16 16 N 1.46926 * 108.76854 * 54.65732 * 15 14 13 17 17 C 1.34775 * 120.63250 * 126.40148 * 16 15 14 18 18 O 1.21281 * 120.00230 * 179.97438 * 17 16 15 19 19 C 1.50702 * 119.99944 * 359.97438 * 17 16 15 20 20 H 1.09000 * 110.66560 * 61.75816 * 19 17 16 21 21 C 1.55004 * 110.75036 * 298.54596 * 19 17 16 22 22 C 1.55814 * 102.78642 * 241.67683 * 21 19 17 23 23 H 1.09002 * 115.38729 * 158.83499 * 22 21 19 24 24 C 1.55826 * 105.32834 * 287.30821 * 22 21 19 25 25 C 1.55004 * 102.78585 * 72.69137 * 24 22 21 26 26 C 1.55819 * 102.78761 * 0.02562 * 25 24 22 27 27 H 1.08998 * 115.38662 * 158.83877 * 26 25 24 28 28 O 1.46530 * 101.24690 * 32.41919 * 26 25 24 29 29 C 1.46926 * 118.73448 * 306.38817 * 16 15 14 30 30 C 1.53041 * 109.45608 * 174.97146 * 13 12 3 31 31 H 1.09000 * 109.46827 * 299.99912 * 1 2 3 32 32 H 1.08996 * 109.47206 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47301 * 59.99660 * 1 2 3 34 34 H 1.08991 * 109.47748 * 120.00241 * 2 1 3 35 35 H 1.09008 * 109.47219 * 240.00558 * 2 1 3 36 36 H 0.97003 * 120.00198 * 179.97438 * 7 6 4 37 37 H 1.08998 * 109.47286 * 209.99755 * 12 3 2 38 38 H 1.08999 * 109.47321 * 330.00202 * 12 3 2 39 39 H 1.09002 * 109.45959 * 55.00168 * 13 12 3 40 40 H 1.09000 * 109.49553 * 298.56987 * 14 13 12 41 41 H 1.09006 * 109.49173 * 58.66481 * 14 13 12 42 42 H 1.09001 * 109.60197 * 294.86378 * 15 14 13 43 43 H 1.09003 * 109.70090 * 174.51008 * 15 14 13 44 44 H 1.08997 * 110.74591 * 0.02562 * 21 19 17 45 45 H 1.08994 * 110.74946 * 123.34639 * 21 19 17 46 46 H 1.09001 * 110.74906 * 191.01671 * 24 22 21 47 47 H 1.09002 * 110.74448 * 314.36825 * 24 22 21 48 48 H 1.08996 * 110.74668 * 118.32331 * 25 24 22 49 49 H 1.09002 * 110.74575 * 241.49664 * 25 24 22 50 50 H 1.09006 * 109.58088 * 293.81119 * 29 16 15 51 51 H 1.09004 * 109.58331 * 173.40026 * 29 16 15 52 52 H 1.09000 * 109.50006 * 301.33576 * 30 13 12 53 53 H 1.09001 * 109.49415 * 61.43980 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1401 2.0644 -1.1805 5 1 2.4905 1.5547 -2.0658 6 6 1.8130 3.4122 -1.2394 7 7 1.0160 3.9362 -0.3324 8 14 2.5040 4.4822 -2.6058 9 1 3.3666 3.6591 -3.4909 10 1 1.3868 5.0558 -3.3982 11 1 3.3075 5.5823 -2.0146 12 6 2.3764 2.0316 1.2630 13 6 3.8549 1.7793 1.5652 14 6 4.0792 0.2839 1.8012 15 6 5.5661 0.0307 2.0689 16 7 5.9990 0.8882 3.1806 17 6 6.6140 0.3591 4.2568 18 8 6.9670 1.0777 5.1679 19 6 6.8631 -1.1254 4.3282 20 1 7.5153 -1.4456 3.5156 21 6 5.5259 -1.9087 4.3001 22 6 5.5316 -2.6502 5.6705 23 1 4.5549 -2.9726 6.0314 24 6 6.5956 -3.7791 5.5235 25 6 7.9329 -2.9959 5.5517 26 6 7.4640 -1.5185 5.7118 27 1 8.2112 -0.8316 6.1091 28 8 6.2493 -1.6895 6.5133 29 6 5.7488 2.3336 3.0966 30 6 4.2600 2.5611 2.8170 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8934 -0.5138 -0.8901 36 1 0.7877 4.8781 -0.3732 37 1 2.2000 3.1041 1.1822 38 1 1.7661 1.6225 2.0681 39 1 4.4596 2.1083 0.7201 40 1 3.4939 -0.0404 2.6616 41 1 3.7685 -0.2743 0.9179 42 1 6.1442 0.2698 1.1764 43 1 5.7188 -1.0157 2.3336 44 1 4.6794 -1.2252 4.2340 45 1 5.5130 -2.6212 3.4754 46 1 6.5381 -4.4753 6.3603 47 1 6.4746 -4.3026 4.5751 48 1 8.5417 -3.3017 6.4025 49 1 8.4797 -3.1318 4.6186 50 1 6.3420 2.7606 2.2879 51 1 6.0199 2.8068 4.0404 52 1 4.0780 3.6238 2.6570 53 1 3.6730 2.2150 3.6678 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328586789.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:45 Heat of formation + Delta-G solvation = -70.357006 kcal Electronic energy + Delta-G solvation = -31383.510470 eV Core-core repulsion = 27447.953355 eV Total energy + Delta-G solvation = -3935.557116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.26324 -40.55071 -38.92187 -37.26451 -34.49517 -33.74358 -33.30633 -32.39254 -31.25513 -30.64199 -30.52922 -28.20817 -25.96687 -24.73871 -24.32772 -23.32315 -22.63928 -21.81753 -21.36422 -21.07321 -19.72568 -18.55164 -18.23135 -17.75966 -17.05323 -16.74347 -16.30740 -16.19572 -15.87532 -15.60756 -15.47475 -15.21221 -15.00565 -14.65990 -14.43082 -14.23595 -14.16795 -13.84743 -13.54839 -13.49317 -13.29946 -12.97627 -12.82643 -12.73447 -12.57978 -12.47454 -12.43447 -12.25480 -12.16619 -12.14210 -12.01689 -11.95874 -11.82952 -11.61774 -11.54981 -11.43580 -11.13158 -11.06247 -10.89284 -10.60171 -10.47584 -9.64637 -8.46745 -7.75732 -5.38520 1.44484 1.49313 1.57439 1.59625 1.99506 2.53671 2.88902 3.29207 3.35479 3.53234 3.68235 3.70255 3.79830 3.94481 3.96963 4.09968 4.13402 4.17779 4.19944 4.29315 4.36989 4.42096 4.46606 4.51643 4.56977 4.62858 4.65400 4.78721 4.79825 4.84686 4.88447 4.93486 4.98855 4.99473 5.04248 5.05754 5.10400 5.12100 5.13410 5.18923 5.25637 5.33466 5.35476 5.38057 5.58939 5.62315 5.67814 5.68752 5.74706 5.90558 6.44513 6.53871 7.15563 7.24949 7.95470 8.47841 9.18615 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.003043 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.962997 B = 9199.827463 C =10026.323369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 N -0.596 5.596 4 C -0.256 4.256 5 H 0.056 0.944 6 C -0.035 4.035 7 N -0.918 5.918 8 Si 0.947 3.053 9 H -0.265 1.265 10 H -0.297 1.297 11 H -0.293 1.293 12 C 0.162 3.838 13 C -0.092 4.092 14 C -0.113 4.113 15 C 0.106 3.894 16 N -0.605 5.605 17 C 0.517 3.483 18 O -0.588 6.588 19 C -0.133 4.133 20 H 0.140 0.860 21 C -0.137 4.137 22 C 0.050 3.950 23 H 0.139 0.861 24 C -0.141 4.141 25 C -0.141 4.141 26 C 0.077 3.923 27 H 0.117 0.883 28 O -0.406 6.406 29 C 0.118 3.882 30 C -0.116 4.116 31 H 0.024 0.976 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.247 0.753 37 H 0.052 0.948 38 H 0.015 0.985 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.116 0.884 44 H 0.063 0.937 45 H 0.123 0.877 46 H 0.077 0.923 47 H 0.103 0.897 48 H 0.077 0.923 49 H 0.100 0.900 50 H 0.072 0.928 51 H 0.073 0.927 52 H 0.061 0.939 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.897 -17.770 7.975 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.012 3.988 3 N -0.317 5.317 4 C -0.387 4.387 5 H 0.074 0.926 6 C -0.232 4.232 7 N -0.562 5.562 8 Si 0.776 3.224 9 H -0.190 1.190 10 H -0.224 1.224 11 H -0.220 1.220 12 C 0.035 3.965 13 C -0.113 4.113 14 C -0.151 4.151 15 C -0.016 4.016 16 N -0.337 5.337 17 C 0.307 3.693 18 O -0.469 6.469 19 C -0.154 4.154 20 H 0.157 0.843 21 C -0.174 4.174 22 C -0.007 4.007 23 H 0.157 0.843 24 C -0.178 4.178 25 C -0.179 4.179 26 C 0.019 3.981 27 H 0.135 0.865 28 O -0.326 6.326 29 C -0.005 4.005 30 C -0.155 4.155 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.133 0.867 44 H 0.082 0.918 45 H 0.141 0.859 46 H 0.095 0.905 47 H 0.121 0.879 48 H 0.096 0.904 49 H 0.119 0.881 50 H 0.090 0.910 51 H 0.092 0.908 52 H 0.080 0.920 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.943 -17.159 8.653 23.170 hybrid contribution -0.322 1.679 -0.765 1.873 sum 12.622 -15.480 7.888 21.474 Atomic orbital electron populations 1.22171 0.99953 0.99744 0.99479 1.21126 0.91810 0.86334 0.99551 1.44011 1.74116 1.10787 1.02757 1.19226 1.36625 0.92628 0.90199 0.92630 1.25786 0.97491 1.00401 0.99530 1.70149 1.35267 1.12332 1.38447 0.85530 0.77845 0.79133 0.79860 1.18955 1.22410 1.21958 1.20707 0.91295 0.98796 0.85654 1.21535 0.98628 0.95607 0.95528 1.21881 0.95414 0.96063 1.01753 1.22091 0.95076 0.95729 0.88693 1.48211 1.57770 1.08142 1.19545 1.21085 0.76342 0.91322 0.80543 1.90648 1.53795 1.63635 1.38835 1.23148 1.00665 0.90044 1.01569 0.84270 1.23434 0.94888 0.99470 0.99646 1.24985 0.97675 0.89181 0.88860 0.84323 1.23268 0.93231 0.97154 1.04152 1.23259 0.98242 0.92357 1.04036 1.24563 0.87896 0.97804 0.87814 0.86537 1.90114 1.32505 1.64159 1.45840 1.21477 0.95835 0.81202 1.01976 1.21783 0.95266 1.00409 0.98084 0.95644 0.91575 0.95818 0.91581 0.93792 0.94360 0.93030 0.96627 0.93026 0.92466 0.89792 0.90715 0.86654 0.91801 0.85873 0.90469 0.87865 0.90415 0.88118 0.91000 0.90803 0.92004 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.87 10.21 71.98 0.73 -5.14 16 2 C 0.14 5.15 5.28 86.38 0.46 5.61 16 3 N -0.60 -27.28 2.25 -701.99 -1.58 -28.86 16 4 C -0.26 -13.26 9.44 84.03 0.79 -12.47 16 5 H 0.06 2.87 7.91 -2.91 -0.02 2.85 16 6 C -0.03 -1.87 4.95 84.86 0.42 -1.45 16 7 N -0.92 -52.81 11.53 21.65 0.25 -52.56 16 8 Si 0.95 43.66 29.60 68.60 2.03 45.69 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 12 C 0.16 7.12 4.76 86.38 0.41 7.53 16 13 C -0.09 -3.22 2.36 -10.77 -0.03 -3.25 16 14 C -0.11 -3.04 4.41 30.67 0.14 -2.90 16 15 C 0.11 2.23 5.63 86.36 0.49 2.71 16 16 N -0.60 -15.81 2.96 -818.90 -2.42 -18.24 16 17 C 0.52 14.25 6.95 87.66 0.61 14.86 16 18 O -0.59 -21.40 15.31 -3.03 -0.05 -21.44 16 19 C -0.13 -2.42 1.96 -9.86 -0.02 -2.44 16 20 H 0.14 1.62 7.70 -2.39 -0.02 1.60 16 21 C -0.14 -2.05 4.28 32.25 0.14 -1.92 16 22 C 0.05 0.80 5.71 32.54 0.19 0.99 16 23 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 24 C -0.14 -1.45 6.52 32.26 0.21 -1.24 16 25 C -0.14 -1.68 6.52 32.25 0.21 -1.47 16 26 C 0.08 1.55 4.63 32.57 0.15 1.70 16 27 H 0.12 2.70 7.74 -2.39 -0.02 2.68 16 28 O -0.41 -10.37 11.65 -148.98 -1.74 -12.11 16 29 C 0.12 3.49 6.43 86.36 0.56 4.05 16 30 C -0.12 -3.82 5.36 30.67 0.16 -3.65 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.07 2.11 6.21 -2.39 -0.01 2.09 16 35 H 0.04 1.59 8.08 -2.38 -0.02 1.57 16 36 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 37 H 0.05 2.72 5.58 -2.39 -0.01 2.71 16 38 H 0.02 0.67 8.07 -2.39 -0.02 0.66 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.06 1.53 7.76 -2.39 -0.02 1.51 16 41 H 0.08 2.29 5.88 -2.38 -0.01 2.28 16 42 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.12 1.66 4.42 -2.39 -0.01 1.65 16 44 H 0.06 1.25 6.86 -2.39 -0.02 1.24 16 45 H 0.12 0.98 7.34 -2.39 -0.02 0.96 16 46 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.10 0.58 7.80 -2.39 -0.02 0.56 16 48 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.10 0.74 7.82 -2.39 -0.02 0.72 16 50 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 51 H 0.07 2.38 7.01 -2.39 -0.02 2.36 16 52 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 53 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -70.49 394.06 2.99 -67.50 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.88 Total: 18.48 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 5.62 Total: 1.53 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -3.75 Total: -99.65 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -1.78 Total: -33.55 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -70.49 2.99 -67.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328586789.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.861 kcal (2) G-P(sol) polarization free energy of solvation -70.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds