Wall clock time and date at job start Tue Mar 31 2020 20:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00015 * 2 1 4 4 C 1.53006 * 109.47067 * 125.00102 * 3 2 1 5 5 O 1.42894 * 109.47198 * 179.97438 * 4 3 2 6 6 C 1.42897 * 114.00048 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.47397 * 330.00210 * 6 5 4 8 8 C 1.52992 * 109.47161 * 90.00407 * 6 5 4 9 9 C 1.50698 * 109.47325 * 210.00435 * 6 5 4 10 10 O 1.21288 * 120.00209 * 349.16918 * 9 6 5 11 11 N 1.34782 * 120.00427 * 169.17415 * 9 6 5 12 12 C 1.46927 * 120.69519 * 354.75154 * 11 9 6 13 13 C 1.53188 * 108.92081 * 125.85484 * 12 11 9 14 14 C 1.53164 * 109.27275 * 55.23139 * 13 12 11 15 15 C 1.52242 * 109.62809 * 299.84054 * 14 13 12 16 16 C 1.54499 * 110.25151 * 297.03829 * 15 14 13 17 17 C 1.55023 * 101.52447 * 276.23491 * 16 15 14 18 18 N 1.47487 * 104.90003 * 323.64309 * 17 16 15 19 19 C 1.36938 * 125.66113 * 204.02842 * 18 17 16 20 20 H 1.08004 * 119.99885 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00031 * 359.97438 * 19 18 17 22 22 N 1.31616 * 119.99907 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99867 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47235 * 59.99656 * 23 21 19 25 25 H 1.48495 * 109.47107 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47048 * 299.99914 * 23 21 19 27 27 C 1.47187 * 108.67697 * 24.00601 * 18 17 16 28 28 C 1.47079 * 120.70297 * 174.77388 * 11 9 6 29 29 H 1.07995 * 120.00191 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.99685 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.99719 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47211 * 5.00576 * 3 2 1 33 33 H 1.08995 * 109.47384 * 245.00255 * 3 2 1 34 34 H 1.08997 * 109.47072 * 59.99826 * 4 3 2 35 35 H 1.08995 * 109.47143 * 300.00300 * 4 3 2 36 36 H 1.09004 * 109.47254 * 63.06181 * 8 6 5 37 37 H 1.08993 * 109.47597 * 183.06285 * 8 6 5 38 38 H 1.09001 * 109.47338 * 303.06630 * 8 6 5 39 39 H 1.08999 * 109.56805 * 6.02137 * 12 11 9 40 40 H 1.09006 * 109.56518 * 245.68485 * 12 11 9 41 41 H 1.09005 * 109.50178 * 295.29441 * 13 12 11 42 42 H 1.08999 * 109.51051 * 175.17709 * 13 12 11 43 43 H 1.08994 * 109.44132 * 59.88116 * 14 13 12 44 44 H 1.09003 * 109.44039 * 179.80658 * 14 13 12 45 45 H 1.09008 * 111.01657 * 34.29017 * 16 15 14 46 46 H 1.09001 * 111.01739 * 158.17093 * 16 15 14 47 47 H 1.08997 * 110.35858 * 204.79017 * 17 16 15 48 48 H 1.08997 * 110.45043 * 82.53986 * 17 16 15 49 49 H 0.97002 * 119.99656 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.91698 * 239.12922 * 27 18 17 51 51 H 1.08998 * 109.91243 * 117.85789 * 27 18 17 52 52 H 1.09003 * 109.57347 * 352.22429 * 28 11 9 53 53 H 1.08993 * 109.57772 * 112.61901 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 8 3.7500 2.5703 1.1813 6 6 4.6887 2.6994 2.2510 7 1 4.3358 2.1353 3.1143 8 6 6.0471 2.1541 1.8060 9 6 4.8286 4.1528 2.6238 10 8 4.3465 5.0102 1.9142 11 7 5.4897 4.5002 3.7459 12 6 5.9803 3.4737 4.6756 13 6 7.4792 3.6889 4.9072 14 6 7.7151 5.1225 5.3921 15 6 7.2206 6.1059 4.3404 16 6 8.0293 5.9436 3.0341 17 6 9.2764 6.8151 3.3315 18 7 8.7640 7.9561 4.1130 19 6 9.3564 9.1868 4.2112 20 1 8.8995 9.9597 4.8115 21 6 10.5442 9.4410 3.5393 22 7 11.1012 8.4989 2.8082 23 14 11.3519 11.1200 3.6727 24 1 11.6765 11.4017 5.0941 25 1 12.5994 11.1346 2.8672 26 1 10.4215 12.1588 3.1622 27 6 7.5099 7.5526 4.7694 28 6 5.7347 5.9147 4.0658 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4027 -0.9313 34 1 3.7400 0.5065 1.0921 35 1 2.4774 1.2355 2.1130 36 1 6.4253 2.7527 0.9773 37 1 6.7486 2.2024 2.6388 38 1 5.9354 1.1185 1.4847 39 1 5.8155 2.4848 4.2477 40 1 5.4490 3.5560 5.6238 41 1 8.0186 3.5270 3.9739 42 1 7.8357 2.9865 5.6606 43 1 7.1728 5.2842 6.3236 44 1 8.7807 5.2776 5.5611 45 1 8.3093 4.9022 2.8745 46 1 7.4750 6.3329 2.1801 47 1 9.7259 7.1638 2.4018 48 1 10.0041 6.2519 3.9157 49 1 11.9310 8.6767 2.3383 50 1 6.6969 8.2043 4.4494 51 1 7.6249 7.6027 5.8522 52 1 5.4360 6.5369 3.2220 53 1 5.1608 6.1941 4.9493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484823754.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:34 Heat of formation + Delta-G solvation = -35.130278 kcal Electronic energy + Delta-G solvation = -30528.900216 eV Core-core repulsion = 26594.870645 eV Total energy + Delta-G solvation = -3934.029570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.64172 -38.95097 -37.72455 -35.89119 -35.39622 -33.21852 -31.90279 -31.77641 -29.99386 -29.24831 -28.57051 -25.99510 -25.67696 -24.14601 -23.50568 -22.85177 -22.19054 -20.31930 -20.12722 -19.30056 -18.09660 -17.52470 -16.96718 -16.55817 -16.29126 -15.70914 -15.32798 -15.08695 -14.91247 -14.68698 -14.28747 -13.97768 -13.90962 -13.56556 -13.35363 -13.28611 -13.17548 -12.76582 -12.58259 -12.29848 -12.25609 -12.02710 -11.94161 -11.79939 -11.52324 -11.48295 -11.28493 -11.15031 -10.97936 -10.86585 -10.74984 -10.53109 -10.11563 -10.08680 -10.01046 -9.94247 -9.76482 -9.66782 -9.45888 -9.36151 -8.59870 -8.47081 -6.78282 -5.60753 -3.02027 1.83977 2.62782 2.72380 3.43217 3.47297 3.48616 3.59365 4.34467 4.52583 4.53970 4.59067 4.69219 4.73921 4.77442 4.91087 4.95636 4.98719 5.03332 5.07618 5.17910 5.31166 5.32295 5.36299 5.42619 5.49179 5.53651 5.58169 5.59680 5.68113 5.72382 5.85893 5.90803 5.94381 5.96207 6.03231 6.14906 6.22492 6.30032 6.35388 6.40701 6.47770 6.50637 6.64894 6.73818 6.85058 6.89072 6.97631 7.44795 7.57002 7.67023 7.91317 8.24191 8.41306 9.26621 9.87630 10.53272 11.42935 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023200 B = 0.002314 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.582723 B =12096.208701 C =12466.322318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.094 4.094 4 C 0.064 3.936 5 O -0.357 6.357 6 C 0.074 3.926 7 H 0.081 0.919 8 C -0.174 4.174 9 C 0.516 3.484 10 O -0.519 6.519 11 N -0.604 5.604 12 C 0.103 3.897 13 C -0.138 4.138 14 C -0.099 4.099 15 C -0.084 4.084 16 C -0.131 4.131 17 C 0.155 3.845 18 N -0.602 5.602 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.149 3.851 28 C 0.132 3.868 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.103 0.897 48 H 0.010 0.990 49 H 0.252 0.748 50 H 0.024 0.976 51 H 0.023 0.977 52 H 0.093 0.907 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.310 -20.872 1.330 25.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.131 4.131 4 C -0.012 4.012 5 O -0.275 6.275 6 C 0.013 3.987 7 H 0.099 0.901 8 C -0.231 4.231 9 C 0.303 3.697 10 O -0.394 6.394 11 N -0.339 5.339 12 C -0.020 4.020 13 C -0.176 4.176 14 C -0.137 4.137 15 C -0.085 4.085 16 C -0.169 4.169 17 C 0.031 3.969 18 N -0.328 5.328 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.023 3.977 28 C 0.010 3.990 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.120 0.880 48 H 0.028 0.972 49 H 0.062 0.938 50 H 0.042 0.958 51 H 0.041 0.959 52 H 0.111 0.889 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.424 -20.139 0.713 25.377 hybrid contribution 0.568 0.516 0.419 0.874 sum -14.856 -19.623 1.132 24.638 Atomic orbital electron populations 1.23922 0.95918 1.02087 1.00579 1.22806 0.96017 0.97968 1.00389 1.20645 0.97990 0.95906 0.98556 1.22526 0.93820 0.86421 0.98474 1.88048 1.54244 1.37234 1.48007 1.21878 0.91455 0.94291 0.91063 0.90123 1.22308 0.95429 1.01839 1.03560 1.20260 0.78487 0.90398 0.80603 1.90723 1.46527 1.51495 1.50606 1.48042 1.56120 1.07843 1.21915 1.21856 0.95583 0.91046 0.93510 1.22030 0.94989 0.98191 1.02346 1.21336 1.02351 0.92754 0.97230 1.21330 0.93604 0.96463 0.97111 1.23018 0.99091 0.99605 0.95197 1.21910 0.90621 0.86066 0.98348 1.44514 1.22651 1.10544 1.55123 1.19030 1.03265 0.88015 1.24623 0.90607 1.24779 0.97862 0.98064 1.00050 1.69805 1.20319 1.31518 1.35477 0.86158 0.78636 0.83402 0.77336 1.21287 1.21628 1.21192 1.21151 0.90208 0.90939 0.95430 1.21539 0.95451 0.80523 1.01485 0.88315 0.88358 0.87191 0.90425 0.89879 0.93041 0.93206 0.90745 0.90406 0.91317 0.90181 0.91232 0.90816 0.90913 0.92276 0.90717 0.92487 0.92377 0.87960 0.97201 0.93776 0.95812 0.95898 0.88883 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.18 14.32 29.01 0.42 -0.76 16 2 C -0.15 -1.03 9.52 -36.03 -0.34 -1.37 16 3 C -0.09 -0.78 6.03 -27.88 -0.17 -0.94 16 4 C 0.06 0.56 5.73 37.16 0.21 0.78 16 5 O -0.36 -4.55 9.54 -54.90 -0.52 -5.07 16 6 C 0.07 0.83 2.28 -27.89 -0.06 0.77 16 7 H 0.08 0.67 6.74 -51.93 -0.35 0.32 16 8 C -0.17 -1.66 9.19 37.15 0.34 -1.32 16 9 C 0.52 7.71 7.03 -10.98 -0.08 7.64 16 10 O -0.52 -10.18 15.99 -14.12 -0.23 -10.41 16 11 N -0.60 -8.02 2.82 -173.17 -0.49 -8.51 16 12 C 0.10 0.99 5.56 -3.71 -0.02 0.96 16 13 C -0.14 -1.47 5.77 -26.55 -0.15 -1.63 16 14 C -0.10 -1.40 4.55 -27.03 -0.12 -1.52 16 15 C -0.08 -1.42 0.55 -154.12 -0.09 -1.50 16 16 C -0.13 -2.54 5.73 -24.88 -0.14 -2.68 16 17 C 0.16 3.79 5.57 -2.43 -0.01 3.78 16 18 N -0.60 -15.53 3.40 -170.24 -0.58 -16.11 16 19 C -0.22 -6.23 10.28 -15.06 -0.15 -6.39 16 20 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 22 N -0.92 -27.24 10.09 55.49 0.56 -26.68 16 23 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.15 3.11 6.43 -3.33 -0.02 3.08 16 28 C 0.13 2.04 4.96 -4.08 -0.02 2.02 16 29 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 30 H 0.10 0.61 7.84 -52.48 -0.41 0.20 16 31 H 0.11 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.08 0.71 7.79 -51.93 -0.40 0.30 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.36 7.81 -51.93 -0.41 -0.04 16 35 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.66 5.71 -51.93 -0.30 0.36 16 38 H 0.07 0.51 7.81 -51.93 -0.41 0.11 16 39 H 0.08 0.58 4.62 -51.93 -0.24 0.34 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.87 5.79 -51.93 -0.30 0.56 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.23 7.49 -51.93 -0.39 0.84 16 45 H 0.06 0.99 6.00 -51.92 -0.31 0.68 16 46 H 0.06 1.23 7.90 -51.93 -0.41 0.82 16 47 H 0.10 2.87 5.88 -51.93 -0.31 2.56 16 48 H 0.01 0.26 7.76 -51.93 -0.40 -0.15 16 49 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.02 0.50 7.80 -51.93 -0.40 0.10 16 51 H 0.02 0.47 7.83 -51.93 -0.41 0.06 16 52 H 0.09 1.69 6.91 -51.93 -0.36 1.33 16 53 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 402.57 15.07 6.07 6.07 Total: -1.00 -33.73 402.57 -9.88 -43.61 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -9.15 Total: -0.75 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.51 Total: 0.46 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.51 Total: -51.29 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.75 Total: -15.48 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.73 -9.88 -43.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484823754.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.477 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds