Wall clock time and date at job start Tue Mar 31 2020 20:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00015 * 2 1 4 4 C 1.53006 * 109.47067 * 125.00102 * 3 2 1 5 5 O 1.42894 * 109.47198 * 179.97438 * 4 3 2 6 6 C 1.42897 * 114.00048 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.47397 * 330.00210 * 6 5 4 8 8 C 1.52992 * 109.47161 * 90.00407 * 6 5 4 9 9 C 1.50698 * 109.47325 * 210.00435 * 6 5 4 10 10 O 1.21288 * 120.00209 * 349.16918 * 9 6 5 11 11 N 1.34782 * 120.00427 * 169.17415 * 9 6 5 12 12 C 1.46927 * 120.69519 * 354.75154 * 11 9 6 13 13 C 1.53188 * 108.92081 * 125.85484 * 12 11 9 14 14 C 1.53164 * 109.27275 * 55.23139 * 13 12 11 15 15 C 1.52242 * 109.62809 * 299.84054 * 14 13 12 16 16 C 1.54499 * 110.25151 * 297.03829 * 15 14 13 17 17 C 1.55023 * 101.52447 * 276.23491 * 16 15 14 18 18 N 1.47487 * 104.90003 * 323.64309 * 17 16 15 19 19 C 1.36938 * 125.66113 * 204.02842 * 18 17 16 20 20 H 1.08004 * 119.99885 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00031 * 359.97438 * 19 18 17 22 22 N 1.31616 * 119.99907 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99867 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47235 * 59.99656 * 23 21 19 25 25 H 1.48495 * 109.47107 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47048 * 299.99914 * 23 21 19 27 27 C 1.47187 * 108.67697 * 24.00601 * 18 17 16 28 28 C 1.47079 * 120.70297 * 174.77388 * 11 9 6 29 29 H 1.07995 * 120.00191 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.99685 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.99719 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47211 * 5.00576 * 3 2 1 33 33 H 1.08995 * 109.47384 * 245.00255 * 3 2 1 34 34 H 1.08997 * 109.47072 * 59.99826 * 4 3 2 35 35 H 1.08995 * 109.47143 * 300.00300 * 4 3 2 36 36 H 1.09004 * 109.47254 * 63.06181 * 8 6 5 37 37 H 1.08993 * 109.47597 * 183.06285 * 8 6 5 38 38 H 1.09001 * 109.47338 * 303.06630 * 8 6 5 39 39 H 1.08999 * 109.56805 * 6.02137 * 12 11 9 40 40 H 1.09006 * 109.56518 * 245.68485 * 12 11 9 41 41 H 1.09005 * 109.50178 * 295.29441 * 13 12 11 42 42 H 1.08999 * 109.51051 * 175.17709 * 13 12 11 43 43 H 1.08994 * 109.44132 * 59.88116 * 14 13 12 44 44 H 1.09003 * 109.44039 * 179.80658 * 14 13 12 45 45 H 1.09008 * 111.01657 * 34.29017 * 16 15 14 46 46 H 1.09001 * 111.01739 * 158.17093 * 16 15 14 47 47 H 1.08997 * 110.35858 * 204.79017 * 17 16 15 48 48 H 1.08997 * 110.45043 * 82.53986 * 17 16 15 49 49 H 0.97002 * 119.99656 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.91698 * 239.12922 * 27 18 17 51 51 H 1.08998 * 109.91243 * 117.85789 * 27 18 17 52 52 H 1.09003 * 109.57347 * 352.22429 * 28 11 9 53 53 H 1.08993 * 109.57772 * 112.61901 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 8 3.7500 2.5703 1.1813 6 6 4.6887 2.6994 2.2510 7 1 4.3358 2.1353 3.1143 8 6 6.0471 2.1541 1.8060 9 6 4.8286 4.1528 2.6238 10 8 4.3465 5.0102 1.9142 11 7 5.4897 4.5002 3.7459 12 6 5.9803 3.4737 4.6756 13 6 7.4792 3.6889 4.9072 14 6 7.7151 5.1225 5.3921 15 6 7.2206 6.1059 4.3404 16 6 8.0293 5.9436 3.0341 17 6 9.2764 6.8151 3.3315 18 7 8.7640 7.9561 4.1130 19 6 9.3564 9.1868 4.2112 20 1 8.8995 9.9597 4.8115 21 6 10.5442 9.4410 3.5393 22 7 11.1012 8.4989 2.8082 23 14 11.3519 11.1200 3.6727 24 1 11.6765 11.4017 5.0941 25 1 12.5994 11.1346 2.8672 26 1 10.4215 12.1588 3.1622 27 6 7.5099 7.5526 4.7694 28 6 5.7347 5.9147 4.0658 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4027 -0.9313 34 1 3.7400 0.5065 1.0921 35 1 2.4774 1.2355 2.1130 36 1 6.4253 2.7527 0.9773 37 1 6.7486 2.2024 2.6388 38 1 5.9354 1.1185 1.4847 39 1 5.8155 2.4848 4.2477 40 1 5.4490 3.5560 5.6238 41 1 8.0186 3.5270 3.9739 42 1 7.8357 2.9865 5.6606 43 1 7.1728 5.2842 6.3236 44 1 8.7807 5.2776 5.5611 45 1 8.3093 4.9022 2.8745 46 1 7.4750 6.3329 2.1801 47 1 9.7259 7.1638 2.4018 48 1 10.0041 6.2519 3.9157 49 1 11.9310 8.6767 2.3383 50 1 6.6969 8.2043 4.4494 51 1 7.6249 7.6027 5.8522 52 1 5.4360 6.5369 3.2220 53 1 5.1608 6.1941 4.9493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484823754.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:33 Heat of formation + Delta-G solvation = -55.115520 kcal Electronic energy + Delta-G solvation = -30529.766841 eV Core-core repulsion = 26594.870645 eV Total energy + Delta-G solvation = -3934.896195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.79100 -40.16236 -38.77314 -37.31712 -36.00212 -34.88064 -33.16678 -32.79435 -31.52863 -30.38454 -29.87372 -27.49703 -26.91671 -25.54629 -24.60993 -23.67664 -23.33914 -22.01911 -20.91163 -20.36679 -19.48070 -18.66651 -18.46096 -17.69538 -17.09249 -16.89956 -16.63598 -16.32104 -16.24442 -15.79019 -15.58376 -15.15459 -14.76455 -14.74269 -14.68056 -14.50317 -14.08554 -13.98870 -13.83651 -13.54274 -13.41225 -13.19992 -13.16467 -12.91993 -12.80483 -12.75800 -12.51205 -12.31015 -12.18920 -12.11111 -12.02100 -11.95518 -11.89705 -11.68308 -11.47698 -11.35088 -11.11509 -10.85356 -10.73811 -10.44444 -10.25187 -9.60295 -8.88837 -7.77953 -5.21992 1.34375 1.44015 1.47958 1.53392 1.54347 1.76431 2.48670 2.80889 3.30692 3.43619 3.62718 3.67421 3.81423 3.84708 3.92460 4.00073 4.03140 4.15121 4.17101 4.24401 4.28113 4.31685 4.45104 4.47315 4.48641 4.56692 4.63655 4.64825 4.72397 4.75364 4.82631 4.87070 4.89871 4.92166 4.92967 4.98560 5.04381 5.11759 5.17355 5.22440 5.24074 5.42389 5.49108 5.52071 5.52767 5.64442 5.73467 5.81586 5.87156 6.12550 6.29543 6.44412 7.09869 7.15404 7.77806 8.42555 9.23794 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023200 B = 0.002314 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.582723 B =12096.208701 C =12466.322318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C -0.095 4.095 4 C 0.061 3.939 5 O -0.393 6.393 6 C 0.079 3.921 7 H 0.122 0.878 8 C -0.170 4.170 9 C 0.506 3.494 10 O -0.581 6.581 11 N -0.600 5.600 12 C 0.098 3.902 13 C -0.131 4.131 14 C -0.097 4.097 15 C -0.067 4.067 16 C -0.114 4.114 17 C 0.162 3.838 18 N -0.625 5.625 19 C -0.239 4.239 20 H 0.080 0.920 21 C -0.070 4.070 22 N -0.949 5.949 23 Si 0.981 3.019 24 H -0.275 1.275 25 H -0.293 1.293 26 H -0.280 1.280 27 C 0.143 3.857 28 C 0.139 3.861 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.081 0.919 46 H 0.032 0.968 47 H 0.061 0.939 48 H -0.006 1.006 49 H 0.246 0.754 50 H 0.017 0.983 51 H 0.034 0.966 52 H 0.056 0.944 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.332 -23.967 3.482 29.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.175 4.175 3 C -0.133 4.133 4 C -0.015 4.015 5 O -0.312 6.312 6 C 0.018 3.982 7 H 0.139 0.861 8 C -0.227 4.227 9 C 0.295 3.705 10 O -0.460 6.460 11 N -0.333 5.333 12 C -0.022 4.022 13 C -0.169 4.169 14 C -0.134 4.134 15 C -0.069 4.069 16 C -0.152 4.152 17 C 0.037 3.963 18 N -0.351 5.351 19 C -0.368 4.368 20 H 0.098 0.902 21 C -0.262 4.262 22 N -0.599 5.599 23 Si 0.809 3.191 24 H -0.201 1.201 25 H -0.219 1.219 26 H -0.206 1.206 27 C 0.017 3.983 28 C 0.016 3.984 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.132 0.868 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.127 0.873 43 H 0.100 0.900 44 H 0.067 0.933 45 H 0.100 0.900 46 H 0.051 0.949 47 H 0.079 0.921 48 H 0.012 0.988 49 H 0.056 0.944 50 H 0.035 0.965 51 H 0.051 0.949 52 H 0.075 0.925 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.461 -23.272 2.911 28.654 hybrid contribution 0.849 1.509 -0.248 1.749 sum -15.612 -21.763 2.662 26.916 Atomic orbital electron populations 1.24083 0.96010 1.02644 0.99973 1.22830 0.96096 0.97665 1.00882 1.20645 0.97805 0.96424 0.98394 1.22727 0.94180 0.85633 0.98954 1.88024 1.54971 1.39409 1.48832 1.21977 0.92309 0.91610 0.92294 0.86104 1.22317 0.94576 1.02689 1.03116 1.21153 0.77483 0.91870 0.80020 1.90694 1.49228 1.53504 1.52539 1.48133 1.55455 1.07541 1.22193 1.22229 0.94684 0.91272 0.94061 1.22015 0.95889 0.96200 1.02763 1.21323 1.00772 0.94259 0.97096 1.21221 0.94412 0.94957 0.96281 1.22788 0.96893 0.99647 0.95867 1.21630 0.92257 0.86377 0.95993 1.44817 1.24115 1.10277 1.55893 1.19430 1.03635 0.89276 1.24482 0.90227 1.25661 0.98687 1.01783 1.00099 1.70077 1.20328 1.33272 1.36250 0.85107 0.77293 0.79066 0.77595 1.20106 1.21902 1.20606 1.21369 0.87941 0.93439 0.95551 1.21253 0.94177 0.82078 1.00917 0.86710 0.88948 0.85427 0.92140 0.90730 0.90671 0.91984 0.93772 0.88791 0.88561 0.86811 0.88518 0.91954 0.87281 0.90021 0.93339 0.90035 0.94945 0.92067 0.98800 0.94416 0.96521 0.94851 0.92500 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 14.32 67.78 0.97 -1.11 16 2 C -0.16 -1.80 9.52 25.64 0.24 -1.55 16 3 C -0.10 -1.50 6.03 29.85 0.18 -1.32 16 4 C 0.06 0.92 5.73 71.98 0.41 1.34 16 5 O -0.39 -9.54 9.54 -130.17 -1.24 -10.78 16 6 C 0.08 1.55 2.28 29.84 0.07 1.62 16 7 H 0.12 1.38 6.74 -2.38 -0.02 1.37 16 8 C -0.17 -2.73 9.19 71.98 0.66 -2.07 16 9 C 0.51 14.65 7.03 87.66 0.62 15.27 16 10 O -0.58 -23.64 15.99 15.76 0.25 -23.38 16 11 N -0.60 -14.61 2.82 -820.18 -2.32 -16.93 16 12 C 0.10 1.39 5.56 86.36 0.48 1.87 16 13 C -0.13 -2.24 5.77 30.71 0.18 -2.06 16 14 C -0.10 -2.50 4.55 30.40 0.14 -2.36 16 15 C -0.07 -2.26 0.55 -51.93 -0.03 -2.28 16 16 C -0.11 -4.56 5.73 31.80 0.18 -4.38 16 17 C 0.16 8.34 5.57 86.88 0.48 8.82 16 18 N -0.62 -33.43 3.40 -692.51 -2.36 -35.79 16 19 C -0.24 -13.91 10.28 84.03 0.86 -13.04 16 20 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 21 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 22 N -0.95 -58.43 10.09 21.65 0.22 -58.21 16 23 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 27 C 0.14 6.03 6.43 86.47 0.56 6.58 16 28 C 0.14 4.20 4.96 86.04 0.43 4.63 16 29 H 0.11 0.88 8.06 -2.91 -0.02 0.85 16 30 H 0.09 1.09 7.84 -2.91 -0.02 1.07 16 31 H 0.13 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.06 1.13 7.79 -2.39 -0.02 1.11 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.08 0.77 7.81 -2.39 -0.02 0.76 16 35 H 0.06 0.78 8.08 -2.39 -0.02 0.76 16 36 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.09 1.18 5.71 -2.39 -0.01 1.17 16 38 H 0.10 1.03 7.81 -2.39 -0.02 1.02 16 39 H 0.11 0.91 4.62 -2.39 -0.01 0.90 16 40 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.06 1.24 5.79 -2.38 -0.01 1.22 16 42 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.05 1.53 7.49 -2.39 -0.02 1.51 16 45 H 0.08 2.84 6.00 -2.38 -0.01 2.83 16 46 H 0.03 1.45 7.90 -2.39 -0.02 1.43 16 47 H 0.06 3.66 5.88 -2.39 -0.01 3.65 16 48 H -0.01 -0.32 7.76 -2.39 -0.02 -0.34 16 49 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 50 H 0.02 0.73 7.80 -2.39 -0.02 0.71 16 51 H 0.03 1.35 7.83 -2.39 -0.02 1.33 16 52 H 0.06 2.16 6.91 -2.39 -0.02 2.14 16 53 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -80.51 402.57 4.35 -76.16 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.87 Total: 13.51 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 6.90 Total: 6.30 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -4.45 Total: -110.93 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.99 Total: -34.17 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -80.51 4.35 -76.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484823754.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.043 kcal (2) G-P(sol) polarization free energy of solvation -80.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds