Wall clock time and date at job start Tue Mar 31 2020 20:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50707 * 120.00215 * 2 1 4 4 C 1.53001 * 109.47000 * 124.99931 * 3 2 1 5 5 O 1.42899 * 109.46897 * 180.02562 * 4 3 2 6 6 C 1.42905 * 114.00017 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46798 * 330.00325 * 6 5 4 8 8 C 1.52999 * 109.46909 * 89.99734 * 6 5 4 9 9 C 1.50703 * 109.47027 * 209.99706 * 6 5 4 10 10 O 1.21275 * 120.00111 * 355.00399 * 9 6 5 11 11 N 1.34778 * 119.99612 * 174.99970 * 9 6 5 12 12 C 1.46928 * 120.55057 * 179.97438 * 11 9 6 13 13 C 1.53342 * 108.68473 * 125.63017 * 12 11 9 14 14 C 1.52110 * 109.44249 * 53.30481 * 13 12 11 15 15 C 1.54385 * 110.50739 * 64.08966 * 14 13 12 16 16 C 1.54457 * 102.87109 * 83.33374 * 15 14 13 17 17 N 1.47083 * 107.29725 * 21.50085 * 16 15 14 18 18 C 1.36935 * 125.62931 * 180.96847 * 17 16 15 19 19 H 1.08003 * 119.99937 * 168.95343 * 18 17 16 20 20 C 1.38811 * 119.99964 * 348.94815 * 18 17 16 21 21 N 1.31619 * 119.99929 * 165.65470 * 20 18 17 22 22 Si 1.86799 * 120.00069 * 345.65523 * 20 18 17 23 23 H 1.48500 * 109.47088 * 185.28736 * 22 20 18 24 24 H 1.48495 * 109.46844 * 305.28614 * 22 20 18 25 25 H 1.48497 * 109.46908 * 65.28631 * 22 20 18 26 26 C 1.47575 * 108.74515 * 1.23423 * 17 16 15 27 27 C 1.52103 * 111.59976 * 300.69054 * 14 13 12 28 28 C 1.46928 * 120.55101 * 359.97438 * 11 9 6 29 29 H 1.08008 * 120.00106 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00160 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.00206 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.46643 * 5.00039 * 3 2 1 33 33 H 1.08990 * 109.47093 * 245.00051 * 3 2 1 34 34 H 1.08990 * 109.47256 * 60.00248 * 4 3 2 35 35 H 1.09002 * 109.47059 * 299.99798 * 4 3 2 36 36 H 1.08997 * 109.47474 * 179.97438 * 8 6 5 37 37 H 1.08996 * 109.47461 * 300.00106 * 8 6 5 38 38 H 1.09002 * 109.47169 * 60.00218 * 8 6 5 39 39 H 1.08999 * 109.60337 * 5.87416 * 12 11 9 40 40 H 1.09002 * 109.60479 * 245.38772 * 12 11 9 41 41 H 1.08999 * 109.47461 * 293.31423 * 13 12 11 42 42 H 1.09004 * 109.48038 * 173.29557 * 13 12 11 43 43 H 1.08995 * 110.73888 * 324.98680 * 15 14 13 44 44 H 1.09004 * 110.73381 * 201.67143 * 15 14 13 45 45 H 1.09003 * 109.87682 * 262.08138 * 16 15 14 46 46 H 1.09002 * 109.88538 * 140.92812 * 16 15 14 47 47 H 0.97002 * 120.00420 * 354.93210 * 21 20 18 48 48 H 1.09003 * 110.37719 * 95.25320 * 26 17 16 49 49 H 1.08995 * 110.38134 * 217.60924 * 26 17 16 50 50 H 1.08994 * 109.47603 * 179.28981 * 27 14 13 51 51 H 1.09001 * 109.48068 * 299.31611 * 27 14 13 52 52 H 1.08992 * 109.60702 * 354.12479 * 28 11 9 53 53 H 1.08995 * 109.60156 * 114.60997 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7491 2.5708 1.1820 6 6 4.6878 2.7000 2.2517 7 1 4.3352 2.1352 3.1147 8 6 6.0465 2.1556 1.8065 9 6 4.8268 4.1534 2.6252 10 8 4.2558 5.0037 1.9758 11 7 5.5857 4.5082 3.6810 12 6 5.7301 5.9216 4.0556 13 6 5.3415 6.0811 5.5304 14 6 6.1417 5.1004 6.3738 15 6 7.6483 5.4298 6.3029 16 6 7.8080 6.5402 7.3647 17 7 6.6711 6.4265 8.2908 18 6 6.4329 7.2413 9.3653 19 1 5.4844 7.1934 9.8795 20 6 7.4106 8.1287 9.7936 21 7 7.0996 9.0983 10.6275 22 14 9.1678 7.9468 9.1864 23 1 10.0366 8.9288 9.8836 24 1 9.6494 6.5710 9.4696 25 1 9.2141 8.1961 7.7232 26 6 5.8327 5.2855 7.8748 27 6 5.8901 3.6616 5.9493 28 6 6.2822 3.4880 4.4766 29 1 -0.5401 0.9354 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9352 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4026 -0.9313 34 1 3.7399 0.5066 1.0921 35 1 2.4772 1.2356 2.1130 36 1 6.7627 2.2546 2.6222 37 1 5.9460 1.1045 1.5363 38 1 6.3992 2.7205 0.9435 39 1 5.0738 6.5330 3.4364 40 1 6.7650 6.2334 3.9145 41 1 4.2771 5.8788 5.6496 42 1 5.5565 7.0993 5.8549 43 1 7.9162 5.8005 5.3136 44 1 8.2469 4.5571 6.5643 45 1 7.7972 7.5179 6.8829 46 1 8.7433 6.4025 7.9073 47 1 6.1750 9.2383 10.8854 48 1 6.1054 4.3904 8.4340 49 1 4.7775 5.5173 8.0187 50 1 6.4883 2.9909 6.5659 51 1 4.8335 3.4251 6.0744 52 1 5.9898 2.4952 4.1349 53 1 7.3596 3.6122 4.3678 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495598039.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:55 Heat of formation + Delta-G solvation = -26.122049 kcal Electronic energy + Delta-G solvation = -30325.397056 eV Core-core repulsion = 26391.758112 eV Total energy + Delta-G solvation = -3933.638944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.81292 -39.26313 -38.00620 -36.07881 -35.47962 -33.41520 -32.33503 -31.33460 -30.66955 -29.32773 -29.07058 -27.33361 -25.01380 -23.74306 -23.49971 -23.02887 -22.59291 -20.59016 -20.32282 -19.88376 -18.34168 -17.63608 -17.17574 -16.80202 -16.41965 -15.95957 -15.48891 -15.42022 -15.06202 -15.01056 -14.50761 -14.12305 -13.97604 -13.72838 -13.62940 -13.44533 -13.19056 -13.09108 -12.99606 -12.68470 -12.38871 -12.24194 -12.18372 -11.91016 -11.77748 -11.55290 -11.47996 -11.39605 -11.28543 -11.17770 -10.96398 -10.46583 -10.37222 -10.25392 -10.15393 -9.93887 -9.81988 -9.56077 -9.31015 -8.95161 -8.71853 -8.64574 -7.01321 -6.29806 -3.21083 1.79033 2.47972 2.56971 3.41648 3.47202 3.48934 3.71561 4.19360 4.45217 4.51559 4.58240 4.61906 4.63713 4.66372 4.72061 4.82943 4.85789 4.90669 4.97868 5.00290 5.10675 5.16855 5.20110 5.25867 5.30819 5.37342 5.42444 5.50605 5.52896 5.61299 5.63101 5.66870 5.70048 5.77366 5.79374 5.89665 5.93935 6.02106 6.17709 6.22467 6.29816 6.30373 6.32801 6.39684 6.50132 6.63133 6.74982 6.76829 6.77640 7.27539 7.68778 8.06623 8.34717 9.05531 9.57331 10.24716 11.20834 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.002253 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.205662 B =12425.627462 C =12673.050587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.156 4.156 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.358 6.358 6 C 0.073 3.927 7 H 0.085 0.915 8 C -0.179 4.179 9 C 0.515 3.485 10 O -0.523 6.523 11 N -0.605 5.605 12 C 0.112 3.888 13 C -0.111 4.111 14 C -0.072 4.072 15 C -0.123 4.123 16 C 0.112 3.888 17 N -0.611 5.611 18 C -0.319 4.319 19 H 0.077 0.923 20 C -0.023 4.023 21 N -0.930 5.930 22 Si 1.073 2.927 23 H -0.303 1.303 24 H -0.300 1.300 25 H -0.287 1.287 26 C 0.147 3.853 27 C -0.119 4.119 28 C 0.101 3.899 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.026 0.974 47 H 0.261 0.739 48 H 0.023 0.977 49 H 0.042 0.958 50 H 0.079 0.921 51 H 0.066 0.934 52 H 0.085 0.915 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 -20.732 -20.378 29.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.174 4.174 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.276 6.276 6 C 0.012 3.988 7 H 0.103 0.897 8 C -0.236 4.236 9 C 0.302 3.698 10 O -0.398 6.398 11 N -0.340 5.340 12 C -0.009 4.009 13 C -0.150 4.150 14 C -0.073 4.073 15 C -0.161 4.161 16 C -0.013 4.013 17 N -0.339 5.339 18 C -0.447 4.447 19 H 0.094 0.906 20 C -0.222 4.222 21 N -0.571 5.571 22 Si 0.907 3.093 23 H -0.232 1.232 24 H -0.229 1.229 25 H -0.214 1.214 26 C 0.021 3.979 27 C -0.157 4.157 28 C -0.022 4.022 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.041 0.959 49 H 0.061 0.939 50 H 0.097 0.903 51 H 0.085 0.915 52 H 0.103 0.897 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.865 -19.431 -20.634 28.605 hybrid contribution -1.460 -1.034 0.267 1.809 sum -5.325 -20.465 -20.367 29.359 Atomic orbital electron populations 1.23933 0.95923 1.02153 1.00301 1.22791 0.96031 0.97919 1.00633 1.20638 0.97974 0.96003 0.98395 1.22544 0.93852 0.86210 0.98662 1.88030 1.54311 1.37392 1.47839 1.21855 0.91384 0.94227 0.91366 0.89703 1.22425 0.95657 1.02011 1.03516 1.20314 0.78805 0.90415 0.80264 1.90707 1.45757 1.51956 1.51428 1.48061 1.48637 1.08227 1.29104 1.21758 1.02042 0.80750 0.96367 1.21645 0.99632 1.00975 0.92708 1.21106 0.95592 0.93706 0.96872 1.22661 0.95277 0.99060 0.99076 1.21986 0.91486 0.96932 0.90878 1.44851 1.25881 1.32507 1.30658 1.20160 1.01636 1.15675 1.07180 0.90559 1.25853 1.04040 0.94497 0.97847 1.70889 1.20672 1.29641 1.35947 0.83796 0.76427 0.74096 0.74938 1.23153 1.22864 1.21431 1.21539 0.95330 0.90768 0.90256 1.21766 1.02159 0.97026 0.94759 1.22041 0.97376 0.91176 0.91559 0.88332 0.88261 0.87181 0.90407 0.89992 0.93011 0.93042 0.90134 0.91223 0.90985 0.89059 0.91079 0.91835 0.89457 0.91280 0.91528 0.93815 0.95664 0.92911 0.95922 0.93931 0.90289 0.91479 0.89724 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.11 14.32 29.02 0.42 -0.69 16 2 C -0.16 -0.96 9.52 -36.02 -0.34 -1.31 16 3 C -0.09 -0.70 6.03 -27.88 -0.17 -0.87 16 4 C 0.06 0.51 5.73 37.16 0.21 0.72 16 5 O -0.36 -4.10 9.53 -55.09 -0.52 -4.62 16 6 C 0.07 0.72 2.30 -27.88 -0.06 0.65 16 7 H 0.09 0.66 7.09 -51.93 -0.37 0.29 16 8 C -0.18 -1.30 9.10 37.16 0.34 -0.96 16 9 C 0.52 6.80 7.12 -10.98 -0.08 6.73 16 10 O -0.52 -9.19 15.91 -14.30 -0.23 -9.42 16 11 N -0.60 -7.07 2.96 -172.56 -0.51 -7.58 16 12 C 0.11 1.48 6.12 -3.63 -0.02 1.45 16 13 C -0.11 -1.64 4.87 -27.01 -0.13 -1.77 16 14 C -0.07 -1.04 0.55 -153.98 -0.08 -1.13 16 15 C -0.12 -1.87 4.91 -25.24 -0.12 -1.99 16 16 C 0.11 2.35 4.24 -2.96 -0.01 2.33 16 17 N -0.61 -14.53 3.31 -170.17 -0.56 -15.10 16 18 C -0.32 -9.08 10.56 -15.06 -0.16 -9.24 16 19 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 20 C -0.02 -0.69 5.50 -17.43 -0.10 -0.78 16 21 N -0.93 -29.36 13.70 55.49 0.76 -28.60 16 22 Si 1.07 26.89 24.53 -169.99 -4.17 22.72 16 23 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 24 H -0.30 -7.25 6.84 56.52 0.39 -6.86 16 25 H -0.29 -6.54 5.43 56.52 0.31 -6.24 16 26 C 0.15 2.79 6.16 -2.74 -0.02 2.77 16 27 C -0.12 -1.27 4.84 -26.99 -0.13 -1.40 16 28 C 0.10 0.90 4.72 -3.61 -0.02 0.89 16 29 H 0.10 0.58 7.84 -52.48 -0.41 0.17 16 30 H 0.10 0.47 8.06 -52.49 -0.42 0.04 16 31 H 0.11 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.08 0.66 7.79 -51.93 -0.40 0.25 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 35 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.08 0.48 5.40 -51.93 -0.28 0.20 16 37 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.32 6.99 -51.93 -0.36 0.95 16 40 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 1.50 7.82 -51.93 -0.41 1.09 16 43 H 0.07 0.92 6.17 -51.93 -0.32 0.60 16 44 H 0.07 0.91 7.98 -51.93 -0.41 0.50 16 45 H 0.04 0.97 6.79 -51.93 -0.35 0.62 16 46 H 0.03 0.58 3.81 -51.93 -0.20 0.38 16 47 H 0.26 8.15 8.73 -40.82 -0.36 7.80 16 48 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 49 H 0.04 0.83 8.03 -51.93 -0.42 0.42 16 50 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 51 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 52 H 0.08 0.55 4.62 -51.93 -0.24 0.31 16 53 H 0.08 0.62 7.62 -51.93 -0.40 0.22 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -34.97 395.77 -8.96 -43.93 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -9.21 Total: -2.70 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.48 Total: -4.59 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.31 Total: -51.28 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.75 Total: -14.04 kcal Atomic # 14 Polarization: 26.89 SS G_CDS: -4.17 Total: 22.72 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.97 -8.96 -43.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495598039.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.804 kcal (2) G-P(sol) polarization free energy of solvation -34.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds